UHGV-0031593 (vOTU-087811)

Viral Genome: UHGV-0031593

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0031593
vOTU ID	vOTU-087811
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_14_1640__NODE_3113_length_34758_cov_10.774401
Associated BioSample	SAMEA4765921
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.36 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.58
Jumbo phage	No

Genome content
Genome length (bp)	34,758
GC content	43.50%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	89%
Average CDS length (bps)	655.09
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0031593_2	K22519	41.0	0.000000000021	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	N/A
PHROG	UHGV-0031593_2	phrog_14030	155.0	0	N/A	unknown function
UniRef90	UHGV-0031593_2	UniRef90_A0A6N2TV57	520.0	0	Peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0031593_2	411459.RUMOBE_01713	316.0	0	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
Pfam	UHGV-0031593_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0031593_2	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0031593_2	PF01374,PF10030,TIGR02594	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_3	phrog_443	62.8	9.1e-18	holin	lysis
UniRef90	UHGV-0031593_3	UniRef90_UPI0018AA56FB	91.7	4.95e-23	holin	N/A
eggNOG-mapper	UHGV-0031593_3	397290.C810_03257	87.8	3.09e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0031593_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0031593_3	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_4	phrog_4105	58.5	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0031593_4	1437605.BACT_0481	51.6	0.00000058	N/A	N/A
UniRef90	UHGV-0031593_5	UniRef90_UPI001C0F3DBD	114.0	3.57e-28	N/A	N/A
eggNOG-mapper	UHGV-0031593_5	1211817.CCAT010000008_gene929	102.0	3.39e-24	N/A	N/A
KOfam	UHGV-0031593_7	K04763	233.4	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0031593_7	phrog_1	185.7	0	integrase	integration and excision
UniRef90	UHGV-0031593_7	UniRef90_UPI001D0E16DF	528.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0031593_7	33035.JPJF01000058_gene3673	407.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0031593_7	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0031593_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0031593_7	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0031593_7	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_9	phrog_18444	78.1	6.9e-23	N/A	unknown function
UniRef90	UHGV-0031593_9	UniRef90_UPI0011788049	54.3	0.00000003	peptide chain release factor 2	N/A
KOfam	UHGV-0031593_10	K06237	60.4	5.1e-18	COL4A; collagen type IV alpha	N/A
PHROG	UHGV-0031593_10	phrog_6616	471.2	0	tail protein	tail
UniRef90	UHGV-0031593_10	UniRef90_A0A173TV73	775.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-0031593_10	33035.JPJF01000043_gene1002	235.0	0	N/A	N/A
Pfam	UHGV-0031593_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0031593_10	PF05113,PF01835,PF03921,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_11	phrog_1194	51.0	0.000000000000021	N/A	unknown function
structural_annotation	UHGV-0031593_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0031593_12	K10421	41.8	0.0000000000046	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0031593_12	phrog_1535	339.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0031593_12	UniRef90_A0A1C5N853	327.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0031593_12	411459.RUMOBE_01384	261.0	0	phage tail tape measure protein	N/A
COG	UHGV-0031593_12	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0031593_12	PF11172	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_13	phrog_706	118.5	5e-35	N/A	unknown function
UniRef90	UHGV-0031593_13	UniRef90_UPI00156F9D1C	221.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0031593_13	411459.RUMOBE_01383	192.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0031593_13	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0031593_13	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_14	phrog_11299	102.8	2.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0031593_14	33035.JPJF01000106_gene3125	95.5	3.77e-23	N/A	N/A
structural_annotation	UHGV-0031593_14	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_15	phrog_3099	113.0	2.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-0031593_15	476272.RUMHYD_01782	247.0	0	N/A	N/A
structural_annotation	UHGV-0031593_15	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_16	phrog_3266	81.7	6.8e-24	tail completion	connector
eggNOG-mapper	UHGV-0031593_16	476272.RUMHYD_01781	217.0	0	N/A	N/A
structural_annotation	UHGV-0031593_16	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_17	phrog_556	62.9	1.2e-18	minor head protein	head and packaging
UniRef90	UHGV-0031593_17	UniRef90_UPI000E4989EB	144.0	4.38004e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-0031593_17	476272.RUMHYD_01780	182.0	0	N/A	N/A
Pfam	UHGV-0031593_17	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0031593_17	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_18	phrog_3366	99.1	3.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0031593_18	476272.RUMHYD_01779	178.0	0	N/A	N/A
structural_annotation	UHGV-0031593_18	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_19	phrog_1233	90.4	2.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0031593_19	411490.ANACAC_00786	106.0	3.46e-27	N/A	N/A
PHROG	UHGV-0031593_20	phrog_541	95.1	4.2e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0031593_20	476272.RUMHYD_01778	172.0	0	N/A	N/A
UniRef90	UHGV-0031593_22	UniRef90_A0A0M2NI16	283.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-0031593_22	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_23	phrog_194	68.5	9.2e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-0031593_23	UniRef90_A0A1C5VV13	63.2	0.00000000895	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0031593_23	397290.C810_05223	84.7	1.25e-17	Phage minor structural protein GP20	N/A
Pfam	UHGV-0031593_23	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0031593_23	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_24	phrog_581	258.6	0	minor head protein	head and packaging
UniRef90	UHGV-0031593_24	UniRef90_A0A373MXM0	614.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0031593_24	476272.RUMHYD_01761	465.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0031593_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0031593_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031593_24	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_25	phrog_1048	134.0	9.80909e-45	N/A	unknown function
UniRef90	UHGV-0031593_25	UniRef90_A0A416JW69	229.0	0	N/A	N/A
eggNOG-mapper	UHGV-0031593_25	457412.RSAG_01107	208.0	0	N/A	N/A
Pfam	UHGV-0031593_25	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0031593_25	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0031593_25	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_26	phrog_2316	199.2	0	N/A	unknown function
UniRef90	UHGV-0031593_26	UniRef90_A0A374LHZ1	362.0	0	N/A	N/A
eggNOG-mapper	UHGV-0031593_26	1280698.AUJS01000007_gene1022	320.0	0	N/A	N/A
Pfam	UHGV-0031593_26	PF16475	N/A	N/A	N/A	DUF5052
structural_annotation	UHGV-0031593_26	PF16475	N/A	N/A	N/A	N/A
KOfam	UHGV-0031593_28	K04068	198.3	0	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	N/A
PHROG	UHGV-0031593_28	phrog_626	196.7	0	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031593_28	UniRef90_A0A396PMA6	255.0	0	Anaerobic ribonucleoside-triphosphate reductase-activating protein	N/A
eggNOG-mapper	UHGV-0031593_28	1235790.C805_02369	228.0	0	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	N/A
Pfam	UHGV-0031593_28	PF13353	N/A	N/A	4Fe-4S single cluster domain	Fer4_12
NCBIFam	UHGV-0031593_28	TIGR02491.1	N/A	N/A	anaerobic ribonucleoside-triphosphate reductase activating protein	N/A
COG	UHGV-0031593_28	COG0602	N/A	N/A	Organic radical activating enzyme NrdG/QueE	N/A
structural_annotation	UHGV-0031593_28	PF13353,MF_00917,TIGR02491,COG0602	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_29	phrog_533	255.3	0	portal protein	head and packaging
UniRef90	UHGV-0031593_29	UniRef90_A0A3D2KHB8	335.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0031593_29	476272.RUMHYD_01758	340.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0031593_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0031593_30	K06909	327.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0031593_30	phrog_3717	154.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0031593_30	UniRef90_A0A416ZL34	717.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0031593_30	33035.JPJF01000106_gene3136	400.0	0	Terminase small subunit	N/A
Pfam	UHGV-0031593_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0031593_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0031593_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0031593_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0031593_30	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0031593_31	K07474	115.8	7.1e-34	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0031593_31	phrog_51	125.3	3.7e-37	terminase small subunit	head and packaging
UniRef90	UHGV-0031593_31	UniRef90_A0A416ZL36	149.0	1.20512e-43	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0031593_31	476272.RUMHYD_01754	129.0	7.65e-37	Terminase small subunit	N/A
Pfam	UHGV-0031593_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0031593_31	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0031593_31	PF03592,COG3728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031593_32	PF18342	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_33	phrog_33130	122.0	1.3e-36	N/A	unknown function
UniRef90	UHGV-0031593_33	UniRef90_A0A3B9CD52	91.7	1.52e-22	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0031593_33	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0031593_35	phrog_8680	259.8	0	N/A	unknown function
UniRef90	UHGV-0031593_35	UniRef90_A0A3R6D7I3	337.0	0	N/A	N/A
eggNOG-mapper	UHGV-0031593_35	411470.RUMGNA_02208	284.0	0	N/A	N/A
Pfam	UHGV-0031593_35	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0031593_35	PF14386	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031593_36	476272.RUMHYD_01751	97.1	6.23e-25	N/A	N/A
PHROG	UHGV-0031593_41	phrog_20593	44.9	0.0000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0031593_42	397290.C810_01505	135.0	3.21e-40	N/A	N/A
UniRef90	UHGV-0031593_43	UniRef90_A0A6L6XDH6	77.4	6.86e-16	N/A	N/A
Pfam	UHGV-0031593_43	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0031593_43	PF04448	N/A	N/A	N/A	N/A
Pfam	UHGV-0031593_44	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0031593_45	phrog_24386	279.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0031593_45	742740.HMPREF9474_02291	234.0	0	phosphatase activity	N/A
COG	UHGV-0031593_45	COG0561	N/A	N/A	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	N/A