UHGV-0031661 (vOTU-065255)

Viral Genome: UHGV-0031661

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0031661
vOTU ID	vOTU-065255
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_J_23_1260__NODE_844_length_33749_cov_8.637325
Associated BioSample	SAMEA4765714
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.35 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.13
Jumbo phage	No

Genome content
Genome length (bp)	33,749
GC content	58.26%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	92%
Average CDS length (bps)	587.26
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0031661_1	phrog_892	67.7	1.2e-19	tail fiber protein	tail
eggNOG-mapper	UHGV-0031661_2	742733.HMPREF9469_05009	58.5	0.0000000121	N/A	N/A
PHROG	UHGV-0031661_3	phrog_13589	165.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0031661_3	742733.HMPREF9469_05009	225.0	0	N/A	N/A
structural_annotation	UHGV-0031661_5	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031661_6	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_7	phrog_26795	116.5	1.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0031661_7	796940.HMPREF9628_00133	82.4	0.00000000000000852	N/A	N/A
structural_annotation	UHGV-0031661_7	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_8	phrog_37549	64.9	1.3e-21	virion structural protein	head and packaging
UniRef90	UHGV-0031661_8	UniRef90_A0A3D0W045	204.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0031661_8	1161901.I1TLF2_9CAUD	94.0	7.36e-17	N/A	N/A
structural_annotation	UHGV-0031661_8	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_9	phrog_33680	118.7	4.2e-35	N/A	unknown function
UniRef90	UHGV-0031661_9	UniRef90_A0A1M6L1P7	227.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0031661_9	1408415.JHXL01000001_gene400	197.0	0	phage tail tape measure protein	N/A
COG	UHGV-0031661_9	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0031661_9	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031661_10	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_11	phrog_88	55.8	7.5e-16	major tail protein	tail
UniRef90	UHGV-0031661_11	UniRef90_UPI00148B0F18	55.8	0.00000337	major tail protein	N/A
eggNOG-mapper	UHGV-0031661_11	1195236.CTER_5106	66.6	0.0000000000753	phage major tail protein, phi13 family	N/A
COG	UHGV-0031661_11	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031661_11	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031661_12	1203606.HMPREF1526_00974	87.8	5.39e-20	N/A	N/A
structural_annotation	UHGV-0031661_12	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031661_13	1203606.HMPREF1526_00975	83.2	3.55e-19	N/A	N/A
structural_annotation	UHGV-0031661_13	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_14	phrog_1951	82.8	2.9e-24	head-tail adaptor	connector
UniRef90	UHGV-0031661_14	UniRef90_A0A890FC27	72.0	0.000000000000031	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0031661_14	1121428.DESHY_20140___1	67.4	0.000000000000345	head-tail adaptor	N/A
COG	UHGV-0031661_14	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0031661_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_15	phrog_5223	55.8	6.2e-16	neck protein	connector
UniRef90	UHGV-0031661_15	UniRef90_UPI000BEC4770	61.6	0.000000000205	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0031661_15	411465.PEPMIC_00737	61.2	0.0000000000499	N/A	N/A
structural_annotation	UHGV-0031661_15	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_16	phrog_10	172.9	0	major head protein	head and packaging
UniRef90	UHGV-0031661_16	UniRef90_A0A3D4JZM2	360.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0031661_16	318464.IO99_13750	328.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0031661_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0031661_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0031661_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0031661_16	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0031661_17	K01358	133.1	2.9e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0031661_17	phrog_94	200.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0031661_17	UniRef90_U4R420	256.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0031661_17	1203606.HMPREF1526_00979	215.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0031661_17	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0031661_17	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0031661_17	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_18	phrog_12	172.1	0	portal protein	head and packaging
UniRef90	UHGV-0031661_18	UniRef90_A0A3B8U1I5	461.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0031661_18	1203606.HMPREF1526_00980	460.0	0	Portal protein	N/A
Pfam	UHGV-0031661_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0031661_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0031661_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_19	phrog_9	402.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0031661_19	UniRef90_UPI001D07C789	798.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0031661_19	1203606.HMPREF1526_00981	758.0	0	Terminase	N/A
Pfam	UHGV-0031661_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0031661_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0031661_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0031661_19	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_20	phrog_1066	114.8	4.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0031661_20	1382358.JHVN01000024_gene1703	107.0	2.19e-28	N/A	N/A
structural_annotation	UHGV-0031661_20	PF05119,TIGR01558	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031661_21	UniRef90_R6M5E4	79.3	1.16e-17	Prophage LambdaBa04 GP54	N/A
eggNOG-mapper	UHGV-0031661_21	1235793.C809_01915	75.9	1.28e-16	HNH endonuclease	N/A
COG	UHGV-0031661_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0031661_22	UniRef90_UPI001F232519	70.5	0.0000000000000116	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0031661_22	742738.HMPREF9460_00868	80.5	2.17e-19	Cysteine-rich KTR	N/A
Pfam	UHGV-0031661_22	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0031661_22	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_23	phrog_3584	126.1	3e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0031661_23	742738.HMPREF9460_00867	126.0	9.86e-33	N/A	N/A
structural_annotation	UHGV-0031661_23	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0031661_24	K07319	148.4	7.00649e-45	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0031661_24	phrog_67	138.6	3.89995e-41	DNA methyltransferase	other
UniRef90	UHGV-0031661_24	UniRef90_UPI00055C7461	219.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0031661_24	675815.VOA_001643	100.0	3.16e-21	DNA methylase	N/A
PADLOC	UHGV-0031661_24	MTase_II_00157	115.2	4.4e-35	Type II methyltransferase	RM
Pfam	UHGV-0031661_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0031661_24	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0031661_24	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_30	phrog_2118	99.4	4.4e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031661_30	UniRef90_A0A329UES5	198.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0031661_30	610130.Closa_0730	118.0	8.66e-33	HNH endonuclease	N/A
Pfam	UHGV-0031661_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0031661_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0031661_30	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_31	phrog_3136	124.4	4.6e-37	N/A	unknown function
UniRef90	UHGV-0031661_31	UniRef90_A0A329TS47	114.0	2.32e-28	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0031661_31	642492.Clole_1416	58.2	0.0000000129	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0031661_31	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0031661_31	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0031661_32	K03497	83.1	5e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0031661_32	phrog_27290	330.3	0	N/A	unknown function
UniRef90	UHGV-0031661_32	UniRef90_G4L1G7	322.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0031661_32	693746.OBV_19860	322.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0031661_32	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0031661_32	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0031661_32	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0031661_33	K03496	191.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0031661_33	phrog_164	161.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031661_33	UniRef90_A0A845R968	308.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0031661_33	742738.HMPREF9460_00854	201.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0031661_33	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0031661_33	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0031661_33	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0031661_34	K02314	234.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0031661_34	phrog_19	226.5	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031661_34	UniRef90_A0A3D1V9Y4	229.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0031661_34	663278.Ethha_2283	147.0	1.31e-36	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0031661_34	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0031661_34	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0031661_34	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0031661_34	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_35	phrog_270	112.7	4.2e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031661_35	UniRef90_UPI001F3D92C2	156.0	2.55036e-43	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0031661_35	742738.HMPREF9460_00851	142.0	2.45e-38	Helix-turn-helix domain	N/A
Pfam	UHGV-0031661_35	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0031661_35	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0031661_35	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031661_37	UniRef90_UPI001C96492F	52.8	0.000000993	excisionase family DNA-binding protein	N/A
Pfam	UHGV-0031661_37	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0031661_37	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0031661_37	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0031661_37	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_39	phrog_6499	119.7	1.3e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-0031661_39	UniRef90_A0A3D4EJF0	131.0	3.74e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0031661_39	1415774.U728_1274	106.0	1.92e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0031661_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031661_39	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0031661_39	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0031661_40	K22300	64.0	3.6e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0031661_40	phrog_8	56.6	7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0031661_40	UniRef90_UPI001BB47897	69.7	0.0000000000000429	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0031661_40	1226322.HMPREF1545_00090	61.6	0.0000000000107	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0031661_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031661_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0031661_40	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0031661_43	K07729	62.6	8.2e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0031661_43	phrog_8	67.2	3.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0031661_43	UniRef90_UPI000D1E8240	76.6	4.78e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0031661_43	1443125.Z962_p0007	72.8	0.00000000000000417	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0031661_43	retron_type_VI_hth_cluster2_1	41.2	0.000000000048	N/A	Retron
Pfam	UHGV-0031661_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031661_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0031661_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031661_44	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0031661_46	K14059	226.4	0	int; integrase	N/A
PHROG	UHGV-0031661_46	phrog_1	193.8	0	integrase	integration and excision
UniRef90	UHGV-0031661_46	UniRef90_A0A3D1VH24	303.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0031661_46	742738.HMPREF9460_04031	261.0	0	Phage integrase family	N/A
Pfam	UHGV-0031661_46	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0031661_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0031661_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0031661_46	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031661_47	UniRef90_A0A8F0WD75	65.9	0.000000000326	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0031661_47	1408437.JNJN01000043_gene801	77.8	0.00000000000000183	N/A	N/A
UniRef90	UHGV-0031661_50	UniRef90_A0A8D9PDT6	64.3	0.0000000000137	Transcriptional regulatory protein	N/A
Pfam	UHGV-0031661_50	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0031661_50	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-0031661_51	phrog_1129	68.6	6.6e-20	holin	lysis
UniRef90	UHGV-0031661_51	UniRef90_UPI00189DD88C	126.0	2.95e-36	phage holin family protein	N/A
eggNOG-mapper	UHGV-0031661_51	1226322.HMPREF1545_00069	125.0	1.46e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0031661_51	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0031661_51	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0031661_52	phrog_1863	54.3	9.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0031661_52	1226322.HMPREF1545_04027	72.0	0.00000000000000136	N/A	N/A
PHROG	UHGV-0031661_53	phrog_1493	56.5	6.6e-16	endolysin	lysis
UniRef90	UHGV-0031661_53	UniRef90_A0A316NTC6	108.0	1.95e-27	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0031661_53	1321782.HMPREF1986_02283	72.4	0.000000000000344	NlpC/P60 family	N/A
Pfam	UHGV-0031661_53	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0031661_53	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A