UHGV-0031662 (vOTU-044153)

Viral Genome: UHGV-0031662

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0031662
vOTU ID	vOTU-044153
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_J_23_1260__NODE_589_length_41792_cov_9.958240
Associated BioSample	SAMEA4765714
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.97
Jumbo phage	No

Genome content
Genome length (bp)	41,715
GC content	57.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	93%
Average CDS length (bps)	690.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0031662_3	K18830	61.5	1.8e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0031662_3	phrog_8	50.3	0.000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0031662_3	UniRef90_A0A2U1BEG8	128.0	8.67e-36	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0031662_3	445972.ANACOL_03315	120.0	1.83e-33	N/A	N/A
PADLOC	UHGV-0031662_3	retron_type_VI_hth_cluster2_1	40.4	0.000000000057	N/A	Retron
Pfam	UHGV-0031662_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0031662_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0031662_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031662_5	471855.Shel_04260	70.5	0.0000000000588	dextransucrase activity	N/A
COG	UHGV-0031662_5	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
COG	UHGV-0031662_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0031662_6	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0031662_7	K14059	133.6	2.9e-39	int; integrase	N/A
PHROG	UHGV-0031662_7	phrog_1	142.7	3.20057e-42	integrase	integration and excision
UniRef90	UHGV-0031662_7	UniRef90_A0A2Z4QB94	313.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0031662_7	641112.ACOK01000111_gene1860	116.0	8.56e-27	Phage integrase family	N/A
Pfam	UHGV-0031662_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0031662_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0031662_7	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031662_9	UniRef90_A0A7M1RSZ3	71.2	0.00000000000306	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0031662_9	1378168.N510_03079	72.0	0.000000000000677	N/A	N/A
KOfam	UHGV-0031662_12	K19167	122.0	6.4e-36	abiQ; protein AbiQ	N/A
PHROG	UHGV-0031662_12	phrog_9764	116.7	1.8e-34	N/A	unknown function
UniRef90	UHGV-0031662_12	UniRef90_A0A845R8D8	214.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0031662_12	1519439.JPJG01000060_gene1906	169.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0031662_12	AbiQ	152.4	4.2039e-45	AbiQ	Abi
Pfam	UHGV-0031662_12	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-0031662_12	PF13958	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031662_13	UniRef90_A0A1C6JAI6	67.0	0.000000000000718	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0031662_13	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0031662_14	K11062	109.1	3.8e-32	entD; probable enterotoxin D	N/A
PHROG	UHGV-0031662_14	phrog_1794	108.4	8.5e-32	amidase	lysis
UniRef90	UHGV-0031662_14	UniRef90_A0A3D4VSU2	164.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0031662_14	411470.RUMGNA_02087	150.0	6.32e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0031662_14	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0031662_14	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-0031662_15	phrog_13256	61.3	9.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0031662_15	1226322.HMPREF1545_00166	75.1	6.48e-17	N/A	N/A
PHROG	UHGV-0031662_17	phrog_937	53.3	0.0000000000000055	hemolysin	other
eggNOG-mapper	UHGV-0031662_17	1519439.JPJG01000023_gene533	74.7	3.12e-16	N/A	N/A
PHROG	UHGV-0031662_18	phrog_5240	65.1	7.9e-19	tail fiber protein	tail
Pfam	UHGV-0031662_18	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0031662_18	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
eggNOG-mapper	UHGV-0031662_19	1232443.BAIA02000078_gene14	57.8	0.00000114	nuclear chromosome segregation	N/A
COG	UHGV-0031662_19	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
Pfam	UHGV-0031662_20	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0031662_20	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0031662_21	PF18962,NF011773	N/A	N/A	N/A	N/A
PHROG	UHGV-0031662_22	phrog_22978	87.2	1.9e-26	N/A	unknown function
UniRef90	UHGV-0031662_22	UniRef90_U2SNH2	842.0	0	LPD23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0031662_22	1226322.HMPREF1545_00787	842.0	0	N/A	N/A
Pfam	UHGV-0031662_22	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-0031662_22	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
UniRef90	UHGV-0031662_23	UniRef90_R5DCX9	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0031662_23	1410650.JHWL01000003_gene2815	129.0	1.09e-30	N/A	N/A
eggNOG-mapper	UHGV-0031662_25	537007.BLAHAN_05255	63.5	0.0000000664	N/A	N/A
PHROG	UHGV-0031662_26	phrog_12105	115.8	2.3e-34	N/A	unknown function
PHROG	UHGV-0031662_27	phrog_15239	43.5	0.0000000000043	N/A	unknown function
PHROG	UHGV-0031662_28	phrog_1357	232.2	0	major head protein	head and packaging
UniRef90	UHGV-0031662_28	UniRef90_A0A2V2CFL5	397.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0031662_28	1410650.JHWL01000003_gene2830	290.0	0	N/A	N/A
Pfam	UHGV-0031662_28	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0031662_28	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0031662_28	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0031662_29	phrog_13908	190.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0031662_29	1410650.JHWL01000003_gene2831	124.0	1.28e-30	N/A	N/A
PHROG	UHGV-0031662_30	phrog_156	306.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0031662_30	1410650.JHWL01000003_gene2833	534.0	0	N/A	N/A
structural_annotation	UHGV-0031662_30	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0031662_31	phrog_511	212.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0031662_31	1410650.JHWL01000003_gene2827	320.0	0	N/A	N/A
structural_annotation	UHGV-0031662_31	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-0031662_32	K06909	134.0	1.4e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0031662_32	phrog_979	129.0	4.1e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0031662_32	UniRef90_A0A810Q5R0	611.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0031662_32	1410650.JHWL01000003_gene2834	600.0	0	N/A	N/A
Pfam	UHGV-0031662_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0031662_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0031662_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031662_33	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0031662_34	phrog_3584	116.5	2.1e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0031662_34	537013.CLOSTMETH_02141	72.4	0.000000000000819	N/A	N/A
structural_annotation	UHGV-0031662_34	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031662_35	665956.HMPREF1032_03087	53.9	0.000000065	N/A	N/A
PHROG	UHGV-0031662_39	phrog_190	119.4	2.7e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031662_39	UniRef90_UPI0006C2AC63	122.0	1.14e-32	N/A	N/A
eggNOG-mapper	UHGV-0031662_39	693746.OBV_25250	123.0	1.01e-33	N/A	N/A
Pfam	UHGV-0031662_39	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0031662_39	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0031662_41	phrog_2118	106.0	4e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031662_41	UniRef90_A0A417HX51	209.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0031662_41	742740.HMPREF9474_03129	120.0	8.61e-34	HNH endonuclease	N/A
Pfam	UHGV-0031662_41	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0031662_41	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0031662_41	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0031662_42	phrog_38832	49.4	0.0000000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0031662_42	1232443.BAIA02000078_gene48	61.2	0.0000000000985	N/A	N/A
Pfam	UHGV-0031662_43	PF14359	N/A	N/A	N/A	DUF4406
Pfam	UHGV-0031662_44	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0031662_47	PF05082	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031662_48	UniRef90_UPI0012AD39DD	56.6	0.00000283	leucine-rich repeat protein	N/A
COG	UHGV-0031662_48	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
UniRef90	UHGV-0031662_49	UniRef90_A0A098GES5	101.0	4.65e-26	Putative phage associated protein	N/A
structural_annotation	UHGV-0031662_49	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031662_52	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A