UHGV-0032071 (vOTU-069959)

Viral Genome: UHGV-0032071

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0032071
vOTU ID	vOTU-069959
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_6_1188__NODE_2360_length_42015_cov_6.986981
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.48 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.64
Jumbo phage	No

Genome content
Genome length (bp)	41,993
GC content	57.59%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	92%
Average CDS length (bps)	616.00
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0032071_1	K16628	45.5	0.00000000000025	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0032071_1	phrog_4433	244.6	0	N/A	unknown function
UniRef90	UHGV-0032071_1	UniRef90_UPI00045B9709	92.8	8.42e-20	collagen-like protein	N/A
eggNOG-mapper	UHGV-0032071_1	106648.BBLJ01000054_gene3814	102.0	4.52e-25	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0032071_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0032071_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0032071_3	phrog_22529	51.6	0.0000000000000096	N/A	unknown function
UniRef90	UHGV-0032071_3	UniRef90_A0A8D9UHA1	195.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-0032071_3	658088.HMPREF0987_02675	67.0	0.0000000000993	peptidase	N/A
Pfam	UHGV-0032071_3	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0032071_3	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0032071_3	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032071_5	UniRef90_A0A8D9PDM8	134.0	6.54e-40	Pyocin activator protein	N/A
UniRef90	UHGV-0032071_7	UniRef90_A0A8D9PDN2	130.0	2.21e-38	DNA-binding protein	N/A
structural_annotation	UHGV-0032071_7	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_9	phrog_8	45.9	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032071_9	UniRef90_A0A8D9UHB1	200.0	0	Repressor protein CI	N/A
eggNOG-mapper	UHGV-0032071_9	1297617.JPJD01000059_gene2644	54.3	0.000000111	addiction module antidote protein HigA	N/A
Pfam	UHGV-0032071_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032071_9	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0032071_9	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032071_12	UniRef90_A0A8D9UHA6	85.1	5.32e-18	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0032071_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0032071_12	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0032071_13	K14059	152.9	2.8026e-45	int; integrase	N/A
PHROG	UHGV-0032071_13	phrog_1	170.0	0	integrase	integration and excision
UniRef90	UHGV-0032071_13	UniRef90_A0A8D9UGU2	648.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0032071_13	693746.OBV_41260	305.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0032071_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0032071_13	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0032071_13	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032071_14	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_15	phrog_20016	202.0	0	N/A	unknown function
UniRef90	UHGV-0032071_15	UniRef90_A0A285PT46	192.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0032071_15	397290.C810_05214	169.0	0	N/A	N/A
structural_annotation	UHGV-0032071_15	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_16	phrog_16490	137.4	3.89995e-41	N/A	unknown function
eggNOG-mapper	UHGV-0032071_16	1408437.JNJN01000043_gene803	140.0	2.83e-38	N/A	N/A
PHROG	UHGV-0032071_17	phrog_22984	83.7	1.7e-24	N/A	unknown function
PHROG	UHGV-0032071_18	phrog_21718	101.3	8.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-0032071_18	397290.C810_05210	76.6	0.00000000000000124	N/A	N/A
PHROG	UHGV-0032071_19	phrog_3754	94.3	1.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0032071_19	476272.RUMHYD_01764	160.0	0	N/A	N/A
PHROG	UHGV-0032071_20	phrog_22978	844.2	0	N/A	unknown function
UniRef90	UHGV-0032071_20	UniRef90_R5G452	393.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0032071_20	1410650.JHWL01000003_gene2814	265.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032071_21	1410650.JHWL01000003_gene2815	84.3	0.0000000000000025	N/A	N/A
PHROG	UHGV-0032071_23	phrog_511	209.5	0	internal virion protein	head and packaging
UniRef90	UHGV-0032071_23	UniRef90_A0A8D9UH72	785.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0032071_23	1226322.HMPREF1545_00785	317.0	0	N/A	N/A
structural_annotation	UHGV-0032071_23	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_24	phrog_12105	74.7	2.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0032071_24	1519439.JPJG01000060_gene1891	63.5	0.0000000000251	N/A	N/A
KOfam	UHGV-0032071_25	K01448	47.2	0.00000000000029	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0032071_25	phrog_1493	73.3	4.2e-21	endolysin	lysis
UniRef90	UHGV-0032071_25	UniRef90_A0A810PUG7	215.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0032071_25	994573.T472_0212035	78.6	0.0000000000000167	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0032071_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0032071_25	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0032071_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0032071_25	PF01520,PF01471,MF_00562,TIGR02883,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_26	phrog_881	91.6	4e-27	holin	lysis
UniRef90	UHGV-0032071_26	UniRef90_UPI00189D3A4F	85.1	2.28e-20	phage holin	N/A
eggNOG-mapper	UHGV-0032071_26	742740.HMPREF9474_02251	82.4	4.96e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-0032071_26	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0032071_26	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_29	phrog_4105	98.8	3.1e-29	N/A	unknown function
UniRef90	UHGV-0032071_29	UniRef90_A0A8D9UHA9	142.0	5.53933e-42	Holin protein	N/A
eggNOG-mapper	UHGV-0032071_29	742733.HMPREF9469_05011	118.0	4.21e-33	N/A	N/A
KOfam	UHGV-0032071_30	K06236	41.5	0.0000000000065	COL1A; collagen type I alpha	N/A
PHROG	UHGV-0032071_30	phrog_5073	57.8	1.3e-16	tail fiber protein	tail
eggNOG-mapper	UHGV-0032071_30	2754.EH55_00535	75.9	0.000000000000949	N/A	N/A
Pfam	UHGV-0032071_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0032071_30	PF20086,TIGR04362	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032071_31	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_32	phrog_15239	85.8	2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0032071_32	1449126.JQKL01000003_gene1694	51.2	0.0000027	N/A	N/A
PHROG	UHGV-0032071_33	phrog_1357	261.6	0	major head protein	head and packaging
UniRef90	UHGV-0032071_33	UniRef90_A0A8D9UH64	730.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0032071_33	1449126.JQKL01000003_gene1695	441.0	0	N/A	N/A
Pfam	UHGV-0032071_33	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0032071_33	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0032071_33	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_34	phrog_13908	299.4	0	N/A	unknown function
UniRef90	UHGV-0032071_34	UniRef90_A0A844DRV7	114.0	8.24e-25	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0032071_34	1410650.JHWL01000003_gene2831	118.0	3.83e-28	N/A	N/A
UniRef90	UHGV-0032071_35	UniRef90_A0A8D9PDR6	168.0	0	YsxB-like protein	N/A
Pfam	UHGV-0032071_35	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0032071_35	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_36	phrog_156	334.7	0	portal protein	head and packaging
UniRef90	UHGV-0032071_36	UniRef90_A0A8D9UH10	1134.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0032071_36	748224.HMPREF9436_01396	535.0	0	N/A	N/A
structural_annotation	UHGV-0032071_36	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0032071_37	K06909	120.0	2.3e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0032071_37	phrog_979	197.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0032071_37	UniRef90_A0A8D9PDR5	956.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0032071_37	657322.FPR_02290	614.0	0	Terminase-like family	N/A
Pfam	UHGV-0032071_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0032071_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0032071_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_38	phrog_606	78.0	1.2e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0032071_38	UniRef90_UPI00195648BB	191.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0032071_38	397290.C810_05185	143.0	1.70006e-41	DNA-packaging protein gp3	N/A
Pfam	UHGV-0032071_38	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0032071_38	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0032071_41	K07726	41.1	0.000000000029	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0032071_41	phrog_25567	58.4	1e-16	N/A	unknown function
UniRef90	UHGV-0032071_41	UniRef90_UPI00164AED9E	130.0	5.92e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032071_41	1235798.C817_04600	91.3	2.13e-22	N/A	N/A
Pfam	UHGV-0032071_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0032071_41	NF040522,COG2944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032071_42	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032071_46	UniRef90_A0A8D9PDQ6	144.0	1.06499e-43	Restriction alleviation protein	N/A
structural_annotation	UHGV-0032071_46	PF14354,TIGR03655	N/A	N/A	N/A	N/A
KOfam	UHGV-0032071_49	K00390	56.3	1.4e-16	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0032071_49	phrog_424	124.9	6e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0032071_49	UniRef90_A0A1H7KWC5	312.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	N/A
eggNOG-mapper	UHGV-0032071_49	665956.HMPREF1032_00140	276.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0032071_49	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0032071_49	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0032071_49	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_50	phrog_190	110.5	1.3e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032071_50	UniRef90_A0A8D9PDD6	257.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0032071_50	1226322.HMPREF1545_00295	118.0	9.06e-32	N/A	N/A
Pfam	UHGV-0032071_50	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0032071_50	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032071_52	UniRef90_A0A8D9PDS1	53.1	0.00000198	Replisome organizer	N/A
structural_annotation	UHGV-0032071_52	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_53	phrog_15768	45.1	0.000000000002	N/A	unknown function
UniRef90	UHGV-0032071_53	UniRef90_UPI0019563B2C	78.2	6.88e-17	N/A	N/A
eggNOG-mapper	UHGV-0032071_53	1121344.JHZO01000003_gene982	59.3	0.00000000162	N/A	N/A
Pfam	UHGV-0032071_53	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0032071_53	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0032071_56	K03111	148.4	6.86636e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0032071_56	phrog_44	149.1	2.24208e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032071_56	UniRef90_A0A810QFR8	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0032071_56	1007096.BAGW01000023_gene151	194.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0032071_56	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0032071_56	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0032071_56	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0032071_56	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0032071_56	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_57	phrog_7566	95.9	2.2e-28	N/A	unknown function
UniRef90	UHGV-0032071_57	UniRef90_A0A8D9UHC0	177.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0032071_57	693746.OBV_24070	115.0	2.11e-32	N/A	N/A
PHROG	UHGV-0032071_58	phrog_72	41.0	0.000000000014	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032071_58	UniRef90_A0A8D9PDS2	306.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0032071_58	445972.ANACOL_01825	131.0	2.85e-36	N/A	N/A
structural_annotation	UHGV-0032071_58	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_59	phrog_7838	142.5	2.59941e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032071_59	UniRef90_A0A8D9UGW3	337.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0032071_59	742767.HMPREF9456_02052	186.0	0	N/A	N/A
structural_annotation	UHGV-0032071_59	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_60	phrog_253	84.8	1.1e-24	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032071_60	UniRef90_A0A8D9PDS3	215.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-0032071_60	748224.HMPREF9436_03356	102.0	1.47e-25	Siphovirus Gp157	N/A
Pfam	UHGV-0032071_60	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0032071_60	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032071_62	UniRef90_A0A8D9UH91	274.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0032071_62	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032071_62	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032071_62	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0032071_63	phrog_27197	69.4	4.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0032071_63	767434.Fraau_1460	50.4	0.0000076	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0032071_63	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A