UHGV-0032126 (vOTU-143942)

Viral Genome: UHGV-0032126

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0032126
vOTU ID	vOTU-143942
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_20_1653__NODE_7008_length_18104_cov_4.869751
Associated BioSample	SAMEA4765934
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.06 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9683
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.95
Jumbo phage	No

Genome content
Genome length (bp)	18,104
GC content	29.10%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	27
CDS density	93%
Average CDS length (bps)	626.67
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 58.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0032126_2	phrog_1066	75.4	7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0032126_2	1341151.ASZU01000004_gene265	52.4	0.000000964	N/A	N/A
PHROG	UHGV-0032126_3	phrog_9	405.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0032126_3	UniRef90_A0A1Y3PHV0	647.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0032126_3	1089548.KI783301_gene3220	617.0	0	Terminase	N/A
Pfam	UHGV-0032126_3	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0032126_3	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0032126_3	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0032126_3	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_4	phrog_12	125.6	2.9e-37	portal protein	head and packaging
UniRef90	UHGV-0032126_4	UniRef90_A0A7X7AAU2	352.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0032126_4	397290.C810_00419	301.0	0	Phage portal protein	N/A
Pfam	UHGV-0032126_4	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0032126_4	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0032126_4	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0032126_6	K06904	129.6	3.1e-38	N/A	N/A
PHROG	UHGV-0032126_6	phrog_80	160.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0032126_6	UniRef90_A0A1V5IPN6	223.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0032126_6	1203606.HMPREF1526_01338	181.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0032126_6	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0032126_6	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0032126_6	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0032126_6	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_7	phrog_10	190.6	0	major head protein	head and packaging
UniRef90	UHGV-0032126_7	UniRef90_A0A1T4M146	348.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0032126_7	1297617.JPJD01000020_gene308	317.0	0	Phage capsid family	N/A
Pfam	UHGV-0032126_7	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0032126_7	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0032126_7	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0032126_7	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_8	phrog_5223	96.3	1.4e-28	neck protein	connector
UniRef90	UHGV-0032126_8	UniRef90_UPI000C06DEDD	96.3	3.64e-24	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0032126_8	1280689.AUJC01000011_gene1523	89.4	3.25e-22	N/A	N/A
structural_annotation	UHGV-0032126_8	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_9	phrog_1951	70.2	2.1e-20	head-tail adaptor	connector
UniRef90	UHGV-0032126_9	UniRef90_UPI0017807C43	52.8	0.000000899	phage head closure protein	N/A
eggNOG-mapper	UHGV-0032126_9	1160721.RBI_I01580	80.9	1.61e-18	head-tail adaptor	N/A
COG	UHGV-0032126_9	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0032126_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032126_10	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_11	phrog_957	46.9	0.00000000000036	head protein	head and packaging
structural_annotation	UHGV-0032126_11	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_12	phrog_885	98.8	4.3e-29	major tail protein	tail
UniRef90	UHGV-0032126_12	UniRef90_A0A7C6X6S5	117.0	5.6e-29	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0032126_12	1160721.RBI_I01578	152.0	2.94273e-44	N/A	N/A
structural_annotation	UHGV-0032126_12	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_14	phrog_8462	102.9	1.3e-30	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0032126_14	1160721.RBI_I01576	154.0	4.47e-37	tail tape measure protein, TP901	N/A
COG	UHGV-0032126_14	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0032126_14	PF10145,TIGR01760	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032126_15	UniRef90_UPI0013D638FD	86.7	7.09e-17	phage tail family protein	N/A
eggNOG-mapper	UHGV-0032126_15	1540257.JQMW01000009_gene3383	67.8	0.000000000255	N/A	N/A
COG	UHGV-0032126_15	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0032126_15	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_16	phrog_5555	360.1	0	tail protein	tail
UniRef90	UHGV-0032126_16	UniRef90_R7ICZ9	298.0	0	Putative antireceptor	N/A
eggNOG-mapper	UHGV-0032126_16	1408823.AXUS01000025_gene2634	256.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0032126_16	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0032126_16	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0032126_16	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0032126_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0032126_16	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0032126_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_18	phrog_24267	104.2	1.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0032126_18	553973.CLOHYLEM_06931	94.4	1.65e-21	tail collar domain protein	N/A
COG	UHGV-0032126_18	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0032126_18	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_19	phrog_2712	57.9	1.6e-16	tail fiber protein	tail
structural_annotation	UHGV-0032126_19	NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-0032126_21	phrog_937	44.3	0.0000000000026	hemolysin	other
eggNOG-mapper	UHGV-0032126_21	1235793.C809_03303	48.5	0.00000872	N/A	N/A
KOfam	UHGV-0032126_23	K01447	62.6	8.3e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0032126_23	phrog_7698	197.1	0	endolysin	lysis
UniRef90	UHGV-0032126_23	UniRef90_A0A7D7GJS2	256.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0032126_23	293826.Amet_2548	242.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0032126_23	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0032126_23	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
UniRef90	UHGV-0032126_26	UniRef90_A0A0M4G1B8	100.0	2.21e-22	LYZ2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0032126_26	1117379.BABA_22578	105.0	4.28e-25	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0032126_26	COG4193	N/A	N/A	Beta- N-acetylglucosaminidase	N/A
structural_annotation	UHGV-0032126_26	PF01832,NF007681,COG1705	N/A	N/A	N/A	N/A
COG	UHGV-0032126_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A