UHGV-0032271 (vOTU-044204)

Viral Genome: UHGV-0032271

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0032271
vOTU ID	vOTU-044204
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_6_1188__NODE_2187_length_43948_cov_19.550705
Associated BioSample	SAMEA4765647
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.73
Jumbo phage	No

Genome content
Genome length (bp)	43,912
GC content	54.78%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	78
CDS density	91%
Average CDS length (bps)	512.96
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0032271_1	phrog_4433	142.9	2.10055e-42	N/A	unknown function
UniRef90	UHGV-0032271_1	UniRef90_A0A6M5C839	96.3	1.07e-21	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0032271_1	573061.Clocel_3578	98.6	8.45e-22	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0032271_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0032271_1	NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032271_4	1121865.OMW_01950	69.7	0.0000000000000107	N/A	N/A
structural_annotation	UHGV-0032271_4	PF17516,NF007197	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_5	phrog_2593	90.9	1.1e-26	anti-repressor	transcription regulation
UniRef90	UHGV-0032271_5	UniRef90_UPI001C2426FA	147.0	2.81e-39	phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0032271_5	476272.RUMHYD_03308	139.0	2.95e-38	BRO family, N-terminal domain	N/A
Pfam	UHGV-0032271_5	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0032271_5	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0032271_5	PF02498,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_8	phrog_32852	42.6	0.0000000000067	N/A	unknown function
structural_annotation	UHGV-0032271_10	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-0032271_12	K22300	61.3	2e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0032271_12	phrog_2967	48.0	0.00000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032271_12	UniRef90_A0A844DFR0	236.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032271_12	748224.HMPREF9436_01444	175.0	0	N/A	N/A
PADLOC	UHGV-0032271_12	retron_type_VI_hth_cluster2_1	40.3	0.000000000042	N/A	Retron
Pfam	UHGV-0032271_12	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0032271_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032271_12	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032271_14	1280696.ATVY01000034_gene3237	137.0	1.29e-33	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
structural_annotation	UHGV-0032271_15	PF16900,NF040991	N/A	N/A	N/A	N/A
KOfam	UHGV-0032271_18	K15773	42.6	0.000000000011	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-0032271_18	UniRef90_A0A6N7TLT0	364.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032271_18	266265.Bxe_A3948	50.4	0.00000493	Helix-turn-helix domain	N/A
Pfam	UHGV-0032271_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032271_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032271_18	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0032271_19	K14059	141.2	1.10002e-41	int; integrase	N/A
PHROG	UHGV-0032271_19	phrog_1	164.7	0	integrase	integration and excision
UniRef90	UHGV-0032271_19	UniRef90_A0A6N7TNQ4	748.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0032271_19	411471.SUBVAR_05137	261.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0032271_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0032271_19	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0032271_19	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_21	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_22	phrog_20016	200.2	0	N/A	unknown function
UniRef90	UHGV-0032271_22	UniRef90_A0A285PT46	207.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0032271_22	1226322.HMPREF1545_00077	179.0	0	N/A	N/A
structural_annotation	UHGV-0032271_22	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_23	phrog_16490	194.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0032271_23	397290.C810_01328	130.0	3.46e-33	N/A	N/A
PHROG	UHGV-0032271_24	phrog_22984	70.1	2.7e-20	N/A	unknown function
PHROG	UHGV-0032271_25	phrog_21718	87.1	2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0032271_25	397290.C810_05210	80.1	8.11e-17	N/A	N/A
PHROG	UHGV-0032271_26	phrog_3754	94.1	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0032271_26	1235790.C805_00054	110.0	1.84e-29	N/A	N/A
COG	UHGV-0032271_29	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0032271_29	PF13560,NF040522	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_32	PF07870,MF_01506	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032271_34	UniRef90_UPI0018835F0C	517.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0032271_34	411483.FAEPRAA2165_00757	165.0	6.5861e-44	N/A	N/A
structural_annotation	UHGV-0032271_34	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_35	phrog_15303	109.4	1.6e-32	N/A	unknown function
Pfam	UHGV-0032271_35	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0032271_37	K07273	167.1	0	acm; lysozyme	N/A
PHROG	UHGV-0032271_37	phrog_291	116.5	2.3e-34	endolysin	lysis
UniRef90	UHGV-0032271_37	UniRef90_A0A564U0D3	416.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0032271_37	718252.FP2_04890	255.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0032271_37	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0032271_37	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0032271_37	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_38	phrog_1382	48.6	0.000000000000057	N/A	unknown function
eggNOG-mapper	UHGV-0032271_38	33035.JPJF01000043_gene998	45.8	0.00000405	N/A	N/A
PHROG	UHGV-0032271_40	phrog_9534	48.7	0.00000000000011	head protein	head and packaging
eggNOG-mapper	UHGV-0032271_40	748224.HMPREF9436_00405	129.0	2.61e-31	domain, Protein	N/A
COG	UHGV-0032271_40	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_41	phrog_3558	186.4	0	tail protein	tail
UniRef90	UHGV-0032271_41	UniRef90_A0A844DGT5	154.0	2.11e-36	Prophage_tail domain-containing protein	N/A
Pfam	UHGV-0032271_41	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0032271_41	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0032271_41	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0032271_41	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032271_42	UniRef90_A0A417QGC1	114.0	2.42e-27	MtfA protein	N/A
eggNOG-mapper	UHGV-0032271_42	1111121.HMPREF1247_1241	90.9	3.71e-19	N/A	N/A
structural_annotation	UHGV-0032271_42	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_43	phrog_28775	95.9	3.1e-28	tail length tape measure protein	tail
UniRef90	UHGV-0032271_43	UniRef90_A0A6N7TLD3	838.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0032271_43	1492737.FEM08_12070	140.0	7.6e-32	tape measure	N/A
Pfam	UHGV-0032271_43	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0032271_43	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0032271_43	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0032271_43	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_45	phrog_885	72.9	3.4e-21	major tail protein	tail
eggNOG-mapper	UHGV-0032271_45	1111121.HMPREF1247_0789	162.0	0	N/A	N/A
structural_annotation	UHGV-0032271_45	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_46	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_47	phrog_17977	44.2	0.0000000000024	N/A	unknown function
UniRef90	UHGV-0032271_47	UniRef90_A0A844DHJ8	119.0	1.63e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0032271_47	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_49	phrog_544	109.0	4.3e-32	major head protein	head and packaging
UniRef90	UHGV-0032271_49	UniRef90_A0A1C6B5R0	322.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0032271_49	476272.RUMHYD_01776	287.0	0	N/A	N/A
structural_annotation	UHGV-0032271_49	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_50	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_52	phrog_5	51.5	0.000000000000023	tail completion or Neck1 protein	connector
UniRef90	UHGV-0032271_52	UniRef90_A0A6N7TNP6	290.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0032271_52	929506.CbC4_1219	89.4	1.19e-20	N/A	N/A
Pfam	UHGV-0032271_52	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0032271_52	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_55	phrog_2468	82.8	5.2e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0032271_55	UniRef90_A0A6N7TLR7	611.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0032271_55	1504822.CCNO01000013_gene286	108.0	5.07e-23	cell adhesion	N/A
Pfam	UHGV-0032271_55	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0032271_55	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_55	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_56	PF08863,MF_01077	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_58	phrog_64	117.0	6.2e-35	portal protein	head and packaging
UniRef90	UHGV-0032271_58	UniRef90_A0A6N7TNT3	892.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0032271_58	642492.Clole_2764	83.6	0.0000000000000231	phage portal protein, SPP1	N/A
Pfam	UHGV-0032271_58	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0032271_58	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0032271_59	K06909	142.5	3.69943e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0032271_59	phrog_10250	175.5	0	N/A	unknown function
UniRef90	UHGV-0032271_59	UniRef90_A0A844D8I4	843.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0032271_59	411490.ANACAC_00783	489.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0032271_59	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0032271_59	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0032271_59	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0032271_59	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0032271_59	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032271_60	UniRef90_UPI0018CC2891	107.0	8.65e-27	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032271_60	1235790.C805_00037	105.0	9.44e-27	N/A	N/A
structural_annotation	UHGV-0032271_60	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_61	phrog_36	65.9	7e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032271_61	UniRef90_A0A6N7TNN9	285.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032271_61	748224.HMPREF9436_01463	81.6	1.02e-17	N/A	N/A
Pfam	UHGV-0032271_61	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0032271_61	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0032271_63	K01160	58.6	1.8e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0032271_63	phrog_34	58.6	1.2e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032271_63	UniRef90_A0A6N7TND6	215.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0032271_63	875454.BAEW01000002_gene491	134.0	7.31e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0032271_63	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0032271_63	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0032271_63	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_68	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0032271_69	K02086	63.0	3.2e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0032271_69	phrog_186	69.3	6.2e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032271_69	UniRef90_A0A6N7TLH4	434.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0032271_69	877411.JMMA01000002_gene2052	63.2	0.00000000774	N/A	N/A
Pfam	UHGV-0032271_69	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0032271_69	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0032271_69	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0032271_69	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0032271_70	K03111	44.0	0.0000000000045	ssb; single-strand DNA-binding protein	N/A
UniRef90	UHGV-0032271_70	UniRef90_UPI001CBB85F6	120.0	3.34e-31	single-stranded DNA-binding protein	N/A
Pfam	UHGV-0032271_70	PF00436	N/A	N/A	Single-strand binding protein family	SSB
structural_annotation	UHGV-0032271_70	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_71	phrog_2760	179.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032271_71	UniRef90_A0A3A6EAW6	478.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0032271_71	1235794.C811_01355	148.0	5.23e-40	RecT family	N/A
Pfam	UHGV-0032271_71	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0032271_71	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0032271_71	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0032271_71	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_72	phrog_674	135.3	4.6e-40	N/A	unknown function
UniRef90	UHGV-0032271_72	UniRef90_A0A3A6E846	453.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032271_72	556268.OFAG_00840	80.9	0.00000000000000556	N/A	N/A
Pfam	UHGV-0032271_72	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0032271_72	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_73	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_74	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_75	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032271_76	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0032271_78	phrog_27197	78.8	5.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0032271_78	394503.Ccel_3068	53.9	0.000000146	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0032271_78	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0032271_78	NF007410	N/A	N/A	N/A	N/A