UHGV-0032502 (vOTU-034888)

Viral Genome: UHGV-0032502

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0032502
vOTU ID	vOTU-034888
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_2_1112__NODE_5685_length_30856_cov_13.454336
Associated BioSample	SAMEA4765572
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.25 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.49
Jumbo phage	No

Genome content
Genome length (bp)	30,856
GC content	55.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	95%
Average CDS length (bps)	544.94
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0032502_1	K01448	133.3	2.3e-39	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0032502_1	phrog_435	127.4	1.2e-37	endolysin	lysis
UniRef90	UHGV-0032502_1	UniRef90_UPI000345777D	108.0	1.85e-23	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0032502_1	1410668.JNKC01000001_gene1675	135.0	8.98e-34	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0032502_1	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0032502_1	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-0032502_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0032502_1	PF01520,PF09992,PF01471,MF_00562,TIGR02883,COG0860,COG4632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_2	phrog_1129	67.8	1.1e-19	holin	lysis
UniRef90	UHGV-0032502_2	UniRef90_UPI001EDED0D7	124.0	1.61e-35	phage holin family protein	N/A
eggNOG-mapper	UHGV-0032502_2	693746.OBV_13280	119.0	4.02e-34	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0032502_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0032502_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_4	phrog_1863	66.2	2.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0032502_4	748224.HMPREF9436_00408	98.2	5.73e-26	N/A	N/A
UniRef90	UHGV-0032502_5	UniRef90_A0A8J6JAX9	57.0	0.000000000606	XkdX family protein	N/A
structural_annotation	UHGV-0032502_5	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_6	phrog_22773	43.9	0.0000000000038	N/A	unknown function
UniRef90	UHGV-0032502_6	UniRef90_A0A8J6JIT9	50.4	0.000005	Toxin-antitoxin system toxin subunit	N/A
eggNOG-mapper	UHGV-0032502_6	657322.FPR_21910	55.8	0.000000047	N/A	N/A
UniRef90	UHGV-0032502_7	UniRef90_A0A096B066	132.0	3.31e-31	Mtd_N domain-containing protein	N/A
UniRef90	UHGV-0032502_8	UniRef90_UPI00137A5F85	72.8	0.00000000000000137	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0032502_8	397287.C807_02203	83.6	1e-20	N/A	N/A
structural_annotation	UHGV-0032502_8	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0032502_9	K18843	61.7	1.7e-17	hicB; antitoxin HicB	N/A
PHROG	UHGV-0032502_9	phrog_497	77.3	2.8e-22	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0032502_9	UniRef90_UPI001D0756FD	200.0	0	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0032502_9	397287.C807_02204	188.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0032502_9	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0032502_9	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0032502_9	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_10	phrog_18725	104.4	6.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0032502_10	693746.OBV_18220	146.0	6.24979e-43	N/A	N/A
PHROG	UHGV-0032502_12	phrog_13879	212.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0032502_12	1226322.HMPREF1545_00061	343.0	0	N/A	N/A
structural_annotation	UHGV-0032502_12	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_13	phrog_1194	70.0	3.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0032502_13	1120998.AUFC01000030_gene2246	108.0	3.16e-27	N/A	N/A
structural_annotation	UHGV-0032502_13	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_14	phrog_1535	103.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0032502_14	UniRef90_A0A810PX76	174.0	1.84971e-42	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0032502_14	1235797.C816_04182	262.0	0	SLT domain	N/A
COG	UHGV-0032502_14	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032502_14	PF16789,TIGR02473	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_15	phrog_706	121.5	6.3e-36	N/A	unknown function
UniRef90	UHGV-0032502_15	UniRef90_UPI000682A80B	254.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0032502_15	693746.OBV_18170	248.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0032502_15	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0032502_15	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_16	phrog_11299	83.0	3.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0032502_16	693746.OBV_18160	152.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0032502_16	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_17	phrog_3099	88.3	9.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0032502_17	1226322.HMPREF1545_00056	246.0	0	N/A	N/A
structural_annotation	UHGV-0032502_17	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_18	phrog_3266	54.9	0.0000000000000012	tail completion	connector
eggNOG-mapper	UHGV-0032502_18	1232443.BAIA02000078_gene24	144.0	2.29953e-42	N/A	N/A
structural_annotation	UHGV-0032502_18	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_19	phrog_556	64.3	1.7e-18	minor head protein	head and packaging
UniRef90	UHGV-0032502_19	UniRef90_UPI00195E1497	166.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0032502_19	1226322.HMPREF1545_00054	127.0	9.38e-36	Minor capsid protein	N/A
Pfam	UHGV-0032502_19	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0032502_19	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_20	phrog_3366	90.3	1.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0032502_20	1226322.HMPREF1545_00053	149.0	1.96182e-44	N/A	N/A
structural_annotation	UHGV-0032502_20	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_21	phrog_541	107.3	8.5e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-0032502_21	642492.Clole_0822	57.8	0.0000000103	N/A	N/A
PHROG	UHGV-0032502_22	phrog_544	184.2	0	major head protein	head and packaging
UniRef90	UHGV-0032502_22	UniRef90_A0A810PZM2	660.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0032502_22	1347392.CCEZ01000005_gene1236	280.0	0	N/A	N/A
Pfam	UHGV-0032502_22	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0032502_22	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032502_23	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_24	phrog_581	285.0	0	minor head protein	head and packaging
UniRef90	UHGV-0032502_24	UniRef90_UPI001D080D49	569.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0032502_24	1226322.HMPREF1545_00046	367.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0032502_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0032502_24	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0032502_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032502_24	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_26	phrog_533	394.6	0	portal protein	head and packaging
UniRef90	UHGV-0032502_26	UniRef90_A0A1C5N775	581.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0032502_26	1226322.HMPREF1545_00044	557.0	0	N/A	N/A
Pfam	UHGV-0032502_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0032502_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0032502_27	K06909	116.5	2.7e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0032502_27	phrog_2	118.3	1e-34	terminase large subunit	head and packaging
UniRef90	UHGV-0032502_27	UniRef90_A0A3D3Y0N9	422.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0032502_27	1226322.HMPREF1545_00043	392.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0032502_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0032502_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0032502_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0032502_27	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032502_29	UniRef90_UPI0009523D83	177.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0032502_29	1226322.HMPREF1545_00042	175.0	0	N/A	N/A
structural_annotation	UHGV-0032502_29	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_30	phrog_59	138.2	2.89999e-41	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032502_30	UniRef90_U2SBR2	226.0	0	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-0032502_30	1226322.HMPREF1545_00041	226.0	0	NUMOD4 motif	N/A
PADLOC	UHGV-0032502_30	HEase_00016	89.4	7.2e-27	homing endonuclease	RM
Pfam	UHGV-0032502_30	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0032502_30	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0032502_30	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0032502_34	K22300	46.4	0.00000000000085	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0032502_34	phrog_8	43.7	0.0000000000056	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032502_34	UniRef90_UPI001F489313	59.7	0.00000000158	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0032502_34	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0032502_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0032502_35	phrog_1689	68.7	1.3e-19	nucleotide kinase	other
UniRef90	UHGV-0032502_35	UniRef90_UPI001897331D	105.0	5.22e-28	N/A	N/A
eggNOG-mapper	UHGV-0032502_35	641149.HMPREF9016_01178	52.8	0.000000129	N/A	N/A
Pfam	UHGV-0032502_35	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0032502_35	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_38	phrog_38832	52.0	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0032502_38	445972.ANACOL_00165	70.9	0.000000000000897	N/A	N/A
PHROG	UHGV-0032502_39	phrog_757	181.2	0	DNA methyltransferase	other
UniRef90	UHGV-0032502_39	UniRef90_UPI001C00B13F	398.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0032502_39	748224.HMPREF9436_03069	317.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0032502_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0032502_39	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_40	phrog_424	101.3	1.1e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0032502_40	UniRef90_UPI001EDF1E9D	407.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0032502_40	1378168.N510_03014	343.0	0	N/A	N/A
PADLOC	UHGV-0032502_40	SspD_00001	65.0	2.5e-18	SspD	SSP
COG	UHGV-0032502_40	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0032502_40	PF01507,MF_00063,NF005316,COG0175	N/A	N/A	N/A	N/A
Pfam	UHGV-0032502_41	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0032502_43	K03111	159.4	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0032502_43	phrog_44	149.8	1.26117e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032502_43	UniRef90_A0A1Y4W0N5	181.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0032502_43	1378168.N510_01674	167.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0032502_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0032502_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0032502_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0032502_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0032502_43	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_45	phrog_4632	55.2	6.8e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032502_45	UniRef90_A0A7X8IB41	112.0	1.03e-29	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0032502_45	556263.FSEG_00477	60.1	0.00000000078	N/A	N/A
structural_annotation	UHGV-0032502_45	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_47	phrog_9804	165.6	0	N/A	unknown function
UniRef90	UHGV-0032502_47	UniRef90_UPI001E312ACC	186.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0032502_47	1121344.JHZO01000003_gene981	181.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0032502_47	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0032502_47	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_48	phrog_2562	168.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032502_48	UniRef90_A0A3A6E2X3	253.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032502_48	445971.ANASTE_00700	167.0	0	N/A	N/A
Pfam	UHGV-0032502_48	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0032502_48	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0032502_48	PF14297,TIGR01446,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_49	phrog_398	147.8	5.04467e-44	N/A	unknown function
UniRef90	UHGV-0032502_49	UniRef90_UPI00137B6F1E	359.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0032502_49	1485543.JMME01000021_gene802	170.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0032502_49	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0032502_49	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_50	phrog_7838	125.9	4e-37	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032502_50	UniRef90_A0A8D9UGW3	199.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0032502_50	742767.HMPREF9456_02052	135.0	6.28e-37	N/A	N/A
structural_annotation	UHGV-0032502_50	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_51	phrog_2205	75.9	3e-22	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032502_51	UniRef90_A0A1I0CLP3	70.5	0.00000000000487	Bacteriophage Mu Gam like protein	N/A
eggNOG-mapper	UHGV-0032502_51	568816.Acin_1854	63.9	0.000000000164	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0032502_51	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-0032502_51	PF07352	N/A	N/A	N/A	N/A
PHROG	UHGV-0032502_54	phrog_4433	71.2	1.7e-23	N/A	unknown function
structural_annotation	UHGV-0032502_54	NF007410	N/A	N/A	N/A	N/A