UHGV-0032695 (vOTU-071903)

Viral Genome: UHGV-0032695

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0032695
vOTU ID	vOTU-071903
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_8_1525__NODE_2753_length_35128_cov_8.243902
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.67 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9662
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.26
Jumbo phage	No

Genome content
Genome length (bp)	35,128
GC content	55.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	95%
Average CDS length (bps)	664.20
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0032695_1	phrog_37799	65.1	3.4e-19	N/A	unknown function
UniRef90	UHGV-0032695_1	UniRef90_R6NA79	139.0	1.67e-39	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0032695_1	1151292.QEW_0990	124.0	2.53e-34	Bacteriophage holin family	N/A
Pfam	UHGV-0032695_1	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0032695_1	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0032695_1	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
KOfam	UHGV-0032695_2	K07273	138.9	4.90006e-41	acm; lysozyme	N/A
PHROG	UHGV-0032695_2	phrog_291	117.4	1.5e-34	endolysin	lysis
UniRef90	UHGV-0032695_2	UniRef90_UPI00195E5E78	185.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0032695_2	411471.SUBVAR_06927	180.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0032695_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0032695_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0032695_2	PF01183,MF_02227,NF002576,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0032695_5	K00986	58.1	1.4e-16	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0032695_5	phrog_1423	124.2	1.1e-36	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032695_5	UniRef90_A0A357TPP5	417.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_5	657322.FPR_27160	239.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-0032695_5	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0032695_5	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_6	phrog_17147	443.1	0	N/A	unknown function
UniRef90	UHGV-0032695_6	UniRef90_A0A1M6MWL0	144.0	6.68e-33	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	N/A
eggNOG-mapper	UHGV-0032695_6	411459.RUMOBE_01720	530.0	0	N/A	N/A
PHROG	UHGV-0032695_7	phrog_16573	60.4	3e-17	N/A	unknown function
UniRef90	UHGV-0032695_7	UniRef90_W0U658	103.0	1.87e-23	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_7	1160721.RBI_I01572	103.0	3.14e-24	N/A	N/A
Pfam	UHGV-0032695_7	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0032695_7	PF10651,NF033814,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_9	phrog_1067	410.5	0	minor head protein	head and packaging
UniRef90	UHGV-0032695_9	UniRef90_A0A3D5L0J3	483.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_9	1160721.RBI_I01574	408.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0032695_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0032695_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0032695_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0032695_9	PF14594,PF00629,TIGR01665,NF033675,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_10	phrog_33	71.4	2.1e-20	distal tail protein Dit	tail
UniRef90	UHGV-0032695_10	UniRef90_A0A1C5W6B6	163.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0032695_10	536233.CLO_0897	92.8	4.15e-20	tail component	N/A
COG	UHGV-0032695_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0032695_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_11	phrog_1272	213.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0032695_11	UniRef90_A0A174XH68	384.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-0032695_11	411468.CLOSCI_00540	348.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0032695_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0032695_11	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0032695_11	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0032695_12	411902.CLOBOL_03872	73.6	8.21e-16	N/A	N/A
PHROG	UHGV-0032695_13	phrog_29863	89.8	2.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0032695_13	665956.HMPREF1032_00110	89.4	6.12e-22	N/A	N/A
structural_annotation	UHGV-0032695_13	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_14	phrog_2175	76.4	3.6e-22	protein with Ig domain	other
UniRef90	UHGV-0032695_14	UniRef90_A0A644VRS9	159.0	5.60519e-45	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_14	665956.HMPREF1032_00111	190.0	0	N/A	N/A
structural_annotation	UHGV-0032695_14	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032695_16	UniRef90_UPI0019D0A5EF	66.6	0.0000000000102	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0032695_16	1226322.HMPREF1545_00119	62.8	0.000000000061	N/A	N/A
Pfam	UHGV-0032695_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0032695_16	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_17	phrog_19734	75.2	7.8e-22	N/A	unknown function
UniRef90	UHGV-0032695_17	UniRef90_UPI00057FE645	60.1	0.00000000258	phage head closure protein	N/A
eggNOG-mapper	UHGV-0032695_17	1235798.C817_02576	61.6	0.000000000131	N/A	N/A
structural_annotation	UHGV-0032695_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_19	phrog_10	115.9	4.1e-34	major head protein	head and packaging
UniRef90	UHGV-0032695_19	UniRef90_A0A1T4YDE5	328.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0032695_19	665956.HMPREF1032_00116	381.0	0	Phage capsid family	N/A
Pfam	UHGV-0032695_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0032695_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0032695_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0032695_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0032695_20	K01358	128.8	6e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0032695_20	phrog_94	194.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0032695_20	UniRef90_A0A8F4L7Y5	181.0	0	Peptidase S14	N/A
eggNOG-mapper	UHGV-0032695_20	86416.Clopa_0340	181.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0032695_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0032695_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0032695_20	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_21	phrog_12	108.5	4.3e-32	portal protein	head and packaging
UniRef90	UHGV-0032695_21	UniRef90_A0A7G8TDY8	298.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0032695_21	665956.HMPREF1032_00118	277.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0032695_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0032695_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0032695_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0032695_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_22	phrog_9	265.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0032695_22	UniRef90_UPI001C46A542	630.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0032695_22	665956.HMPREF1032_00123	620.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0032695_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0032695_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0032695_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0032695_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_23	phrog_5110	73.6	2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0032695_23	UniRef90_A0A4U7JDP0	106.0	7.54e-28	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0032695_23	665956.HMPREF1032_00124	110.0	2.69e-30	N/A	N/A
Pfam	UHGV-0032695_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0032695_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0032695_24	K07451	46.2	0.00000000000082	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0032695_24	phrog_119	59.8	4.4e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032695_24	UniRef90_A0A7X5HXL9	86.7	8.88e-20	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0032695_24	665956.HMPREF1032_00125	119.0	1.83e-33	HNH nucleases	N/A
COG	UHGV-0032695_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0032695_26	phrog_36	67.0	3.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032695_26	UniRef90_A0A645DPV0	63.9	0.000000000277	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_26	411471.SUBVAR_05843	59.3	0.00000000298	N/A	N/A
structural_annotation	UHGV-0032695_26	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_28	phrog_15609	95.4	5.9e-29	N/A	unknown function
UniRef90	UHGV-0032695_28	UniRef90_A0A3A6JZQ1	134.0	6.34e-32	N/A	N/A
eggNOG-mapper	UHGV-0032695_28	1514668.JOOA01000001_gene225	75.5	0.000000000002	N/A	N/A
structural_annotation	UHGV-0032695_28	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_29	phrog_8470	219.7	0	N/A	unknown function
UniRef90	UHGV-0032695_29	UniRef90_UPI0002D9F0BD	149.0	2.86e-35	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_29	1007096.BAGW01000031_gene117	149.0	4.97e-36	PcfJ-like protein	N/A
Pfam	UHGV-0032695_29	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0032695_29	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_30	phrog_36399	99.9	2.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-0032695_30	1226322.HMPREF1545_00099	89.0	2.56e-21	N/A	N/A
PHROG	UHGV-0032695_31	phrog_37023	105.8	3.3e-31	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032695_31	UniRef90_A0A6S6XBJ8	150.0	9.66896e-44	Tn7_Tnp_TnsA_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_31	1200557.JHWV01000006_gene1745	51.6	0.00000525	N/A	N/A
Pfam	UHGV-0032695_31	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0032695_31	PF06356,MF_04160,NF002584	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_32	phrog_3584	201.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0032695_32	525254.HMPREF0072_1311	125.0	1.3e-31	N/A	N/A
structural_annotation	UHGV-0032695_32	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0032695_33	K00571	153.7	1.4013e-45	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0032695_33	phrog_67	152.3	2.8026e-45	DNA methyltransferase	other
UniRef90	UHGV-0032695_33	UniRef90_UPI00096AAFE4	229.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0032695_33	1444310.JANV01000096_gene3256	126.0	1.36e-30	DNA methylase	N/A
PADLOC	UHGV-0032695_33	MTase_II_00051	136.6	3.4e-40	Type II methyltransferase	RM
Pfam	UHGV-0032695_33	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0032695_33	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0032695_33	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0032695_34	phrog_3136	78.6	6.2e-23	N/A	unknown function
UniRef90	UHGV-0032695_34	UniRef90_A0A5B5WVN6	67.0	0.0000000000281	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_34	693746.OBV_25380	67.0	0.0000000000337	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0032695_34	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0032695_34	PF08819,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0032695_35	K03698	55.5	8.6e-16	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0032695_35	phrog_28876	135.3	3.5e-40	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0032695_35	UniRef90_UPI00137B488C	157.0	2.8026e-45	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_35	697329.Rumal_1804	153.0	2.8026e-44	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0032695_35	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0032695_35	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0032695_45	K22300	71.1	2.1e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0032695_45	phrog_8	59.3	9.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032695_45	UniRef90_A0A645JJK5	73.2	9.14e-16	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_45	246199.CUS_7779	59.7	0.000000000579	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0032695_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032695_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032695_45	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0032695_46	K22300	63.5	4.7e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0032695_46	phrog_8	63.6	4.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032695_46	UniRef90_A0A0M2NJ60	82.8	2.97e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0032695_46	697281.Mahau_2933	73.6	0.00000000000000346	transcriptional regulator, XRE family	N/A
Pfam	UHGV-0032695_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032695_46	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0032695_46	PF12844,MF_02017,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0032695_47	K18843	74.7	1.8e-21	hicB; antitoxin HicB	N/A
PHROG	UHGV-0032695_47	phrog_497	76.9	3.6e-22	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0032695_47	UniRef90_A0A1Q6T3W5	236.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-0032695_47	657322.FPR_23750	196.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0032695_47	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0032695_47	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0032695_47	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-0032695_48	K07339	65.3	7.7e-19	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0032695_48	phrog_353	92.0	2.9e-27	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0032695_48	UniRef90_A0A1Q6T334	123.0	8.11e-36	Toxin HicA	N/A
eggNOG-mapper	UHGV-0032695_48	478749.BRYFOR_07601	89.0	7.23e-23	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0032695_48	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0032695_48	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0032695_48	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0032695_49	K06400	379.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0032695_49	phrog_95	373.1	0	integrase	integration and excision
UniRef90	UHGV-0032695_49	UniRef90_UPI00195D2465	359.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0032695_49	1235835.C814_01150	359.0	0	N/A	N/A
Pfam	UHGV-0032695_49	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0032695_49	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0032695_49	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0032695_49	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0032695_49	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A