UHGV-0032748 (vOTU-012168)

Viral Genome: UHGV-0032748

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0032748
vOTU ID	vOTU-012168
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_16_2355__NODE_1825_length_45280_cov_5.143906
Associated BioSample	SAMEA4766259
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.01
Jumbo phage	No

Genome content
Genome length (bp)	45,257
GC content	55.26%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	93%
Average CDS length (bps)	598.80
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0032748_1	phrog_27197	146.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0032748_1	394503.Ccel_3068	96.3	8.98e-23	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0032748_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0032748_1	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_5	phrog_253	112.2	4.1e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032748_5	UniRef90_A0A843H617	138.0	6.8e-39	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0032748_5	888060.HMPREF9081_0431	109.0	2.56e-28	Siphovirus Gp157	N/A
Pfam	UHGV-0032748_5	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0032748_5	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_6	phrog_7838	132.5	3.6e-39	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032748_6	UniRef90_A0A8D9UGW3	225.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0032748_6	742767.HMPREF9456_02052	190.0	0	N/A	N/A
structural_annotation	UHGV-0032748_6	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_7	phrog_72	58.2	1.2e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032748_7	UniRef90_UPI000C7BF263	168.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0032748_7	445972.ANACOL_01825	142.0	7.01994e-41	N/A	N/A
structural_annotation	UHGV-0032748_7	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_8	phrog_7566	81.8	5.3e-24	N/A	unknown function
UniRef90	UHGV-0032748_8	UniRef90_A0A8D9UHC0	80.9	1.06e-17	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0032748_8	693746.OBV_25470	90.9	3.62e-22	N/A	N/A
KOfam	UHGV-0032748_9	K03111	117.9	1.3e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0032748_9	phrog_44	121.0	1e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032748_9	UniRef90_UPI001F420DC7	132.0	3.82e-37	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0032748_9	748224.HMPREF9436_03359	122.0	1.5e-33	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0032748_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0032748_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0032748_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0032748_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0032748_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_10	phrog_270	110.0	3e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032748_10	UniRef90_UPI000497F8A6	145.0	6.78e-40	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032748_10	1232446.BAIE02000002_gene816	145.0	1.14e-40	N/A	N/A
structural_annotation	UHGV-0032748_10	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0032748_11	K02314	227.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0032748_11	phrog_19	216.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032748_11	UniRef90_UPI001F1C052D	435.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0032748_11	1203606.HMPREF1526_01325	164.0	1.68156e-43	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0032748_11	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0032748_11	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0032748_11	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0032748_11	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0032748_12	K01160	45.8	0.0000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0032748_12	phrog_1682	71.3	1.4e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032748_12	UniRef90_UPI0009406B47	100.0	2.08e-24	endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0032748_12	220668.lp_2433	95.5	2.26e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0032748_12	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0032748_12	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_17	phrog_6721	295.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0032748_17	665950.HMPREF1025_01974	265.0	0	N/A	N/A
structural_annotation	UHGV-0032748_17	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_18	phrog_599	45.4	0.0000000000016	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0032748_18	UniRef90_A0A845MWR1	63.5	0.00000000000529	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0032748_18	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0032748_18	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0032748_18	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0032748_18	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_20	phrog_3136	114.0	7.6e-34	N/A	unknown function
UniRef90	UHGV-0032748_20	UniRef90_UPI001A9A8D4F	115.0	3.53e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0032748_20	97139.C824_00742	57.0	0.0000000617	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0032748_20	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0032748_20	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_21	phrog_18716	156.7	0	N/A	unknown function
UniRef90	UHGV-0032748_21	UniRef90_A0A5B9YFW1	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032748_21	1029718.SFBM_0379	129.0	2.69e-36	N/A	N/A
Pfam	UHGV-0032748_21	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0032748_21	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_23	phrog_36	72.2	8.4e-21	transcriptional regulator	transcription regulation
Pfam	UHGV-0032748_23	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0032748_23	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0032748_23	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_24	phrog_5070	139.2	1.29998e-41	N/A	unknown function
eggNOG-mapper	UHGV-0032748_24	929794.CALV01000014_gene27	80.1	0.0000000000000176	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
COG	UHGV-0032748_24	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0032748_24	MF_01691,NF040481	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032748_25	1235802.C823_04625	66.6	0.00000000000606	N/A	N/A
structural_annotation	UHGV-0032748_25	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_28	phrog_21731	93.8	1.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0032748_28	521098.Aaci_1077	103.0	3.85e-27	N/A	N/A
PADLOC	UHGV-0032748_28	icity0043	91.7	1.2e-26	N/A	CRISPR-CAS
Pfam	UHGV-0032748_34	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-0032748_34	PF03869	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_35	phrog_2412	41.8	0.000000000012	N/A	unknown function
KOfam	UHGV-0032748_36	K21523	46.0	0.0000000000002	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0032748_36	phrog_2	100.3	2.8e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0032748_36	UniRef90_UPI001F401ABC	657.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0032748_36	316274.Haur_1384	144.0	7.07e-35	N/A	N/A
Pfam	UHGV-0032748_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0032748_36	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0032748_36	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_37	phrog_3287	178.5	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0032748_37	665956.HMPREF1032_03917	669.0	0	N/A	N/A
structural_annotation	UHGV-0032748_37	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_39	phrog_35275	63.6	1.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0032748_39	1226322.HMPREF1545_03846	74.3	0.00000000000177	N/A	N/A
PHROG	UHGV-0032748_40	phrog_24113	54.6	0.0000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0032748_40	1226322.HMPREF1545_03847	50.1	0.0000065	N/A	N/A
structural_annotation	UHGV-0032748_40	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_41	phrog_371	140.9	4.49957e-42	major head protein	head and packaging
UniRef90	UHGV-0032748_41	UniRef90_A0A1Y4TDW7	468.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0032748_41	1226322.HMPREF1545_03848	285.0	0	N/A	N/A
Pfam	UHGV-0032748_41	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0032748_41	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_42	phrog_156	237.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0032748_42	693746.OBV_23930	459.0	0	N/A	N/A
structural_annotation	UHGV-0032748_42	PF12236,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_43	phrog_13046	43.7	0.000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0032748_43	693746.OBV_23880	106.0	5.24e-26	N/A	N/A
structural_annotation	UHGV-0032748_43	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032748_44	665956.HMPREF1032_03918	121.0	1.26e-28	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0032748_45	phrog_15594	83.4	1.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0032748_45	1118055.CAGU01000013_gene763	65.9	0.00000000000115	N/A	N/A
structural_annotation	UHGV-0032748_45	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_46	phrog_31538	55.2	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0032748_46	665950.HMPREF1025_01991	49.7	0.00000732	N/A	N/A
PHROG	UHGV-0032748_47	phrog_13589	204.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0032748_47	411460.RUMTOR_01324	242.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032748_48	290402.Cbei_3386	61.6	0.0000000483	N/A	N/A
KOfam	UHGV-0032748_50	K07273	204.6	0	acm; lysozyme	N/A
PHROG	UHGV-0032748_50	phrog_291	160.7	0	endolysin	lysis
UniRef90	UHGV-0032748_50	UniRef90_UPI00164A97A0	197.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0032748_50	537013.CLOSTMETH_03464	165.0	1.4013e-45	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0032748_50	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0032748_50	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0032748_50	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032748_51	97138.C820_00248	60.8	0.000000000036	N/A	N/A
PHROG	UHGV-0032748_52	phrog_1129	78.4	5.5e-23	holin	lysis
UniRef90	UHGV-0032748_52	UniRef90_A0A3R5ZDU6	136.0	3.04e-40	Holin	N/A
eggNOG-mapper	UHGV-0032748_52	1256908.HMPREF0373_00463	129.0	5.73e-38	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0032748_52	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0032748_52	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032748_53	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032748_56	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032748_58	1506994.JNLQ01000004_gene3618	212.0	0	N/A	N/A
UniRef90	UHGV-0032748_59	UniRef90_A0A4R1R5G7	77.8	3.22e-18	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-0032748_59	658088.HMPREF0987_00997	76.3	2.21e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0032748_59	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0032748_59	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-0032748_60	K14059	93.1	4.4e-27	int; integrase	N/A
PHROG	UHGV-0032748_60	phrog_1	98.6	8.1e-29	integrase	integration and excision
UniRef90	UHGV-0032748_60	UniRef90_UPI001897E1C8	154.0	1.18e-39	site-specific integrase	N/A
eggNOG-mapper	UHGV-0032748_60	411471.SUBVAR_07390	97.1	5.1e-20	Phage integrase family	N/A
Pfam	UHGV-0032748_60	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0032748_60	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0032748_60	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0032748_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032748_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032748_61	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032748_62	1268072.PSAB_08410	51.6	0.00000691	N/A	N/A
structural_annotation	UHGV-0032748_62	PF10358	N/A	N/A	N/A	N/A
COG	UHGV-0032748_64	COG4197	N/A	N/A	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	N/A
structural_annotation	UHGV-0032748_64	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_65	phrog_8	46.4	0.00000000000084	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032748_65	UniRef90_UPI001C009F10	112.0	3.1e-31	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0032748_65	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032748_65	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032748_65	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0032748_66	phrog_463	208.8	0	anti-repressor	transcription regulation
UniRef90	UHGV-0032748_66	UniRef90_UPI00137B411D	276.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0032748_66	411490.ANACAC_00813	224.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0032748_66	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0032748_66	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0032748_66	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0032748_66	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032748_67	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032748_68	596152.DesU5LDRAFT_1910	58.5	0.0000000766	N/A	N/A
PHROG	UHGV-0032748_70	phrog_4433	214.0	0	N/A	unknown function
UniRef90	UHGV-0032748_70	UniRef90_A0A6M5C839	110.0	3.17e-27	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0032748_70	573061.Clocel_3578	117.0	1.93e-28	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0032748_70	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0032748_70	NF000318	N/A	N/A	N/A	N/A