UHGV-0032755 (vOTU-011982)

Viral Genome: UHGV-0032755

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0032755
vOTU ID	vOTU-011982
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_N_24_1344__NODE_562_length_33676_cov_9.936695
Associated BioSample	SAMEA4765787
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9758
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.73
Jumbo phage	No

Genome content
Genome length (bp)	33,676
GC content	36.86%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	91%
Average CDS length (bps)	591.17
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0032755_1	K07273	120.1	2.5e-35	acm; lysozyme	N/A
PHROG	UHGV-0032755_1	phrog_291	95.1	9e-28	endolysin	lysis
UniRef90	UHGV-0032755_1	UniRef90_A0A356C4L5	740.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0032755_1	515620.EUBELI_01316	167.0	2.8026e-45	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0032755_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0032755_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0032755_1	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_2	phrog_199	71.5	9.8e-21	holin	lysis
UniRef90	UHGV-0032755_2	UniRef90_A0A356C4Q2	238.0	0	Holin	N/A
eggNOG-mapper	UHGV-0032755_2	483218.BACPEC_01140	213.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0032755_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0032755_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0032755_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0032755_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_5	phrog_2566	49.2	0.000000000000079	N/A	unknown function
PHROG	UHGV-0032755_6	phrog_18110	336.0	0	N/A	unknown function
UniRef90	UHGV-0032755_6	UniRef90_A0A8D9PGP3	604.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0032755_6	411459.RUMOBE_00923	410.0	0	N/A	N/A
Pfam	UHGV-0032755_6	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0032755_6	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0032755_6	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0032755_6	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032755_7	PF07761	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032755_8	UniRef90_A0A1T4XKQ1	90.5	1.77e-18	Phage-related protein	N/A
eggNOG-mapper	UHGV-0032755_8	1347392.CCEZ01000045_gene7	87.4	4.18e-18	phage tail	N/A
COG	UHGV-0032755_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0032755_8	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_9	phrog_1272	259.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0032755_9	UniRef90_A0A1C6HQ77	500.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0032755_9	610130.Closa_0752	433.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0032755_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0032755_9	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0032755_9	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0032755_9	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_10	phrog_709	104.8	5.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0032755_10	610130.Closa_0750	135.0	3.85e-39	N/A	N/A
structural_annotation	UHGV-0032755_10	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_11	phrog_88	133.4	1.4e-39	major tail protein	tail
UniRef90	UHGV-0032755_11	UniRef90_A0A8E3N1Q1	189.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0032755_11	1469948.JPNB01000001_gene698	150.0	3.40516e-43	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0032755_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0032755_11	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_12	phrog_78	52.0	0.000000000000015	tail terminator	connector
UniRef90	UHGV-0032755_12	UniRef90_C2UED4	87.0	4.57e-20	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-0032755_12	476272.RUMHYD_01476	97.8	3.88e-25	COG NOG18352 non supervised orthologous group	N/A
structural_annotation	UHGV-0032755_12	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_13	phrog_5	55.8	0.0000000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-0032755_13	UniRef90_A0A8J6PH82	103.0	4.1e-26	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0032755_13	1226322.HMPREF1545_00119	102.0	3.23e-26	N/A	N/A
Pfam	UHGV-0032755_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0032755_13	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_14	phrog_1951	85.1	5.2e-25	head-tail adaptor	connector
UniRef90	UHGV-0032755_14	UniRef90_UPI00057C10DD	70.1	0.000000000000152	phage head closure protein	N/A
eggNOG-mapper	UHGV-0032755_14	198094.BA_0471	60.8	0.000000000094	head-tail adaptor	N/A
NCBIFam	UHGV-0032755_14	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0032755_14	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0032755_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_15	phrog_2550	67.6	1.1e-19	N/A	unknown function
UniRef90	UHGV-0032755_15	UniRef90_UPI001E35E63D	57.8	0.00000000656	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0032755_15	1226322.HMPREF1545_00117	77.0	3.34e-17	N/A	N/A
structural_annotation	UHGV-0032755_15	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_16	phrog_10	185.4	0	major head protein	head and packaging
UniRef90	UHGV-0032755_16	UniRef90_R9N389	479.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0032755_16	1235798.C817_04585	479.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0032755_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0032755_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0032755_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0032755_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0032755_17	K06904	150.9	9.80909e-45	N/A	N/A
PHROG	UHGV-0032755_17	phrog_80	178.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0032755_17	UniRef90_A0A358PQU8	281.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0032755_17	398512.JQKC01000009_gene450	274.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0032755_17	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0032755_17	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0032755_17	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0032755_17	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_18	phrog_12	192.8	0	portal protein	head and packaging
UniRef90	UHGV-0032755_18	UniRef90_A0A358PSB3	484.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0032755_18	1121423.JONT01000042_gene1421	451.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0032755_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0032755_18	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0032755_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0032755_18	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_19	phrog_9	301.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0032755_19	UniRef90_A0A0D8IV16	974.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0032755_19	1226322.HMPREF1545_00113	842.0	0	Phage Terminase	N/A
Pfam	UHGV-0032755_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0032755_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0032755_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0032755_19	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_20	phrog_361	68.4	1.1e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0032755_20	UniRef90_A0A1C6H6I9	119.0	1.37e-32	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0032755_20	596315.HMPREF0634_0388	68.6	0.000000000000309	Phage terminase, small subunit	N/A
Pfam	UHGV-0032755_20	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0032755_20	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_21	phrog_119	54.8	0.0000000000000015	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032755_21	UniRef90_U2R3I0	92.0	3.49e-23	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-0032755_21	1226322.HMPREF1545_00111	92.0	5.85e-24	HNH nucleases	N/A
Pfam	UHGV-0032755_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0032755_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0032755_22	phrog_1760	107.0	1.9e-31	anti-termination protein	transcription regulation
UniRef90	UHGV-0032755_22	UniRef90_A0A1C5VLT1	230.0	0	ORF6N domain	N/A
eggNOG-mapper	UHGV-0032755_22	476272.RUMHYD_02879	204.0	0	ORF6N domain	N/A
Pfam	UHGV-0032755_22	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-0032755_22	PF10543,PF13058,TIGR02681,COG3646,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032755_23	UniRef90_A0A292SSH8	87.8	8.49e-22	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0032755_23	478749.BRYFOR_07643	66.2	0.0000000000000524	N/A	N/A
structural_annotation	UHGV-0032755_23	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032755_24	UniRef90_A0A3R6K9T6	82.4	1.85e-19	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0032755_24	1042156.CXIVA_01520	70.5	0.00000000000000179	N/A	N/A
structural_annotation	UHGV-0032755_24	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_26	phrog_36	60.2	4.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032755_26	UniRef90_UPI00148AE65B	74.3	0.0000000000000373	N/A	N/A
eggNOG-mapper	UHGV-0032755_26	658655.HMPREF0988_02569	70.1	0.000000000000295	sigma factor activity	N/A
COG	UHGV-0032755_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0032755_26	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_27	phrog_625	62.9	2e-18	N/A	unknown function
UniRef90	UHGV-0032755_27	UniRef90_A0A413YU40	201.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0032755_27	397290.C810_01502	129.0	8.16e-37	N/A	N/A
structural_annotation	UHGV-0032755_27	PF12961,COG2028	N/A	N/A	N/A	N/A
KOfam	UHGV-0032755_31	K04763	189.2	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0032755_31	phrog_1	167.4	0	integrase	integration and excision
UniRef90	UHGV-0032755_31	UniRef90_A0A6L5YHS5	426.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0032755_31	1514668.JOOA01000001_gene378	209.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0032755_31	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0032755_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0032755_31	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0032755_31	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0032755_32	K03427	56.7	3.6e-16	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0032755_32	phrog_5696	189.7	0	N/A	unknown function
UniRef90	UHGV-0032755_32	UniRef90_A0A0M6WYD5	205.0	0	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0032755_32	395019.Bmul_5588	115.0	6.93e-28	N-6 DNA Methylase	N/A
PADLOC	UHGV-0032755_32	MTase_I_00005	44.6	0.0000000000015	Type I methyltransferase	RM
Pfam	UHGV-0032755_32	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0032755_32	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0032755_32	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_33	phrog_15077	99.0	8.1e-29	N/A	unknown function
UniRef90	UHGV-0032755_33	UniRef90_A0A3A6HZA9	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032755_33	483218.BACPEC_01165	233.0	0	N/A	N/A
structural_annotation	UHGV-0032755_33	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_34	phrog_8470	288.9	0	N/A	unknown function
UniRef90	UHGV-0032755_34	UniRef90_UPI00164C094F	195.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0032755_34	483218.BACPEC_01166	397.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0032755_34	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0032755_34	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032755_35	483218.BACPEC_01167	205.0	0	N/A	N/A
PHROG	UHGV-0032755_37	phrog_7566	92.0	3.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0032755_37	742740.HMPREF9474_04319	79.3	9.31e-18	N/A	N/A
structural_annotation	UHGV-0032755_38	PF19962,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-0032755_39	K03469	70.5	3.1e-20	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0032755_39	phrog_531	65.1	1e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032755_39	UniRef90_A0A413YU26	266.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0032755_39	1121447.JONL01000002_gene2134	76.3	0.00000000000000178	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0032755_39	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0032755_39	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0032755_39	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_40	phrog_3584	164.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0032755_40	641107.CDLVIII_1314	151.0	2.17061e-42	N/A	N/A
structural_annotation	UHGV-0032755_40	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_46	phrog_643	56.0	3.7e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0032755_46	1118063.I7I4C8_9CAUD	52.4	0.000000342	N/A	N/A
Pfam	UHGV-0032755_46	PF11195	N/A	N/A	N/A	DUF2829
PHROG	UHGV-0032755_47	phrog_3	40.2	0.00000000013	transcriptional repressor	transcription regulation
UniRef90	UHGV-0032755_47	UniRef90_UPI000E7391FB	71.6	0.00000000000000706	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032755_47	1321782.HMPREF1986_02244	59.3	0.000000000105	Helix-turn-helix domain	N/A
Pfam	UHGV-0032755_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032755_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0032755_48	phrog_2967	57.4	2.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032755_48	UniRef90_R6A4U7	251.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0032755_48	1235798.C817_00620	97.1	3.8e-24	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0032755_48	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0032755_48	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0032755_48	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0032755_49	phrog_20936	51.2	0.000000000000023	N/A	unknown function
UniRef90	UHGV-0032755_49	UniRef90_UPI0013E038FD	53.9	0.0000000656	ImmA/IrrE family metallo-endopeptidase	N/A
structural_annotation	UHGV-0032755_49	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0032755_50	K03763	165.4	0	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	N/A
PHROG	UHGV-0032755_50	phrog_192	156.0	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032755_50	UniRef90_A0A7C9H3B0	384.0	0	BRCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0032755_50	537013.CLOSTMETH_02498	292.0	0	EXOIII	N/A
PADLOC	UHGV-0032755_50	cd06127	124.7	9.6e-37	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0032755_50	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0032755_50	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0032755_50	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0032755_50	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0032755_50	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
Pfam	UHGV-0032755_51	PF04434	N/A	N/A	SWIM zinc finger	SWIM