UHGV-0032878 (vOTU-130550)

Viral Genome: UHGV-0032878

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0032878
vOTU ID	vOTU-130550
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_8_1525__NODE_2524_length_36942_cov_32.956137
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.59 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9788
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.72
Jumbo phage	No

Genome content
Genome length (bp)	36,942
GC content	39.31%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	85%
Average CDS length (bps)	455.04
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0032878_1	1298920.KI911353_gene2682	175.0	0	TIGRFAM Phage	N/A
COG	UHGV-0032878_1	COG5410	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032878_2	469596.HMPREF9488_03215	103.0	1.27e-26	N/A	N/A
structural_annotation	UHGV-0032878_2	PF16475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032878_4	UniRef90_A0A3E3JYB1	97.8	7.19e-26	Conjugal transfer protein	N/A
Pfam	UHGV-0032878_4	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0032878_4	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_5	phrog_3886	266.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0032878_5	742740.HMPREF9474_02292	261.0	0	N/A	N/A
KOfam	UHGV-0032878_6	K03744	156.5	0	lemA; LemA protein	N/A
PHROG	UHGV-0032878_6	phrog_1383	165.9	0	virion structural protein	head and packaging
UniRef90	UHGV-0032878_6	UniRef90_A0A893W810	335.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0032878_6	742735.HMPREF9467_00879	280.0	0	LemA family	N/A
Pfam	UHGV-0032878_6	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0032878_6	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0032878_6	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_7	phrog_2428	96.1	2.3e-28	N/A	unknown function
UniRef90	UHGV-0032878_7	UniRef90_A0A396QA65	250.0	0	ABC transporter ATPase	N/A
eggNOG-mapper	UHGV-0032878_7	632245.CLP_1645	194.0	0	N/A	N/A
dbAPIS	UHGV-0032878_7	APIS024	N/A	N/A	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	N/A
PHROG	UHGV-0032878_8	phrog_1048	95.0	1e-27	N/A	unknown function
UniRef90	UHGV-0032878_8	UniRef90_A0A415D571	323.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032878_8	457412.RSAG_01107	137.0	4.92e-39	N/A	N/A
Pfam	UHGV-0032878_8	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0032878_8	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0032878_8	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_9	phrog_1233	81.4	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0032878_9	411490.ANACAC_00786	83.6	5.82e-19	N/A	N/A
structural_annotation	UHGV-0032878_9	PF13058	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032878_12	PF06004,NF033216,COG4568	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032878_14	PF13069	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032878_15	476272.RUMHYD_01907	99.4	3.4e-23	N/A	N/A
KOfam	UHGV-0032878_16	K07741	41.3	0.000000000036	antB; anti-repressor protein	N/A
PHROG	UHGV-0032878_16	phrog_130	191.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0032878_16	UniRef90_A0A2Z4UD85	368.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0032878_16	658655.HMPREF0988_00912	295.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0032878_16	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0032878_16	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0032878_16	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0032878_16	PF03374,PF02498,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032878_17	UniRef90_K1SH40	65.1	0.00000000000484	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0032878_17	411470.RUMGNA_00075	59.7	0.0000000000883	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0032878_17	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0032878_17	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032878_19	UniRef90_A0A893WAT2	585.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0032878_19	500632.CLONEX_04013	450.0	0	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-0032878_19	PF18847	N/A	N/A	Large polyvalent protein associated domain 29	LPD29
COG	UHGV-0032878_19	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0032878_19	PF18847	N/A	N/A	N/A	N/A
KOfam	UHGV-0032878_24	K01520	55.4	8.4e-16	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0032878_24	phrog_135	65.8	6.8e-19	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032878_24	UniRef90_A0A2P8EJ97	154.0	0	dUTP pyrophosphatase	N/A
eggNOG-mapper	UHGV-0032878_24	877420.ATVW01000001_gene2133	152.0	0	dUTPase	N/A
Pfam	UHGV-0032878_24	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0032878_24	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0032878_24	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032878_26	UniRef90_UPI000CF8F0F1	223.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032878_26	97139.C824_02654	86.3	3.08e-20	N/A	N/A
Pfam	UHGV-0032878_26	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0032878_26	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032878_26	PF07866,COG4728	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_28	phrog_8684	75.0	1.2e-22	N/A	unknown function
UniRef90	UHGV-0032878_28	UniRef90_A0A373MXN9	301.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0032878_28	457412.RSAG_01162	154.0	1.4013e-45	YopX protein	N/A
Pfam	UHGV-0032878_28	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0032878_28	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_29	phrog_22292	117.3	7.5e-35	N/A	unknown function
PHROG	UHGV-0032878_31	phrog_20593	44.7	0.00000000000096	N/A	unknown function
eggNOG-mapper	UHGV-0032878_32	397290.C810_01505	140.0	3.3505e-42	N/A	N/A
UniRef90	UHGV-0032878_34	UniRef90_UPI0006D0B862	201.0	0	N/A	N/A
Pfam	UHGV-0032878_34	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0032878_35	887325.HMPREF0381_0090	93.6	9.91e-24	N/A	N/A
PHROG	UHGV-0032878_36	phrog_26445	89.0	3.5e-26	N/A	unknown function
UniRef90	UHGV-0032878_36	UniRef90_UPI001EDD5E1E	145.0	3.33509e-43	Trp family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0032878_36	742765.HMPREF9457_02112	88.2	2.47e-21	N/A	N/A
structural_annotation	UHGV-0032878_36	PF00196	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_37	phrog_25456	76.5	2.8e-22	N/A	unknown function
PHROG	UHGV-0032878_40	phrog_9822	155.0	0	N/A	unknown function
KOfam	UHGV-0032878_44	K00558	185.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0032878_44	phrog_116	217.3	0	DNA methyltransferase	other
UniRef90	UHGV-0032878_44	UniRef90_A0A373MWF0	837.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0032878_44	742740.HMPREF9474_04317	693.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0032878_44	MTase_II_00020	93.9	5.6e-31	Type II methyltransferase	RM
Pfam	UHGV-0032878_44	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0032878_44	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0032878_44	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0032878_45	K00390	72.7	2.1e-21	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0032878_45	phrog_424	150.6	8.40779e-45	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0032878_45	UniRef90_UPI0018A95D39	602.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0032878_45	742765.HMPREF9457_03403	416.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0032878_45	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0032878_45	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0032878_45	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032878_46	PF17354	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_48	phrog_7488	47.1	0.00000000000034	N/A	unknown function
eggNOG-mapper	UHGV-0032878_48	1208587.S6CRF1_9CAUD	51.2	0.00000893	N/A	N/A
structural_annotation	UHGV-0032878_48	COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-0032878_50	K17680	112.4	1.2e-39	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0032878_50	phrog_19	188.0	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032878_50	UniRef90_UPI0018977FCD	1211.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0032878_50	1232453.BAIF02000057_gene1145	968.0	0	DNA replication initiation	N/A
Pfam	UHGV-0032878_50	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0032878_50	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
structural_annotation	UHGV-0032878_50	PF03796,PF16793,MF_01498,MF_00700,NF004109,NF040562,COG0305,COG1467	N/A	N/A	N/A	N/A
KOfam	UHGV-0032878_51	K00986	139.0	4.00001e-41	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0032878_51	phrog_1423	270.3	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032878_51	UniRef90_UPI001899D21F	674.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0032878_51	658655.HMPREF0988_00871	453.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0032878_51	icity0040	96.5	3.5e-28	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0032878_51	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0032878_51	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0032878_51	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_52	phrog_3206	77.4	1.3e-22	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032878_52	UniRef90_UPI00189799E8	241.0	0	four helix bundle protein	N/A
eggNOG-mapper	UHGV-0032878_52	658655.HMPREF0988_00872	192.0	0	N/A	N/A
Pfam	UHGV-0032878_52	PF05635	N/A	N/A	23S rRNA-intervening sequence protein	23S_rRNA_IVP
structural_annotation	UHGV-0032878_52	PF05635,NF033474,COG3308	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_53	phrog_9958	173.6	0	N/A	unknown function
UniRef90	UHGV-0032878_53	UniRef90_F7JKD2	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032878_53	658655.HMPREF0988_00873	219.0	0	N/A	N/A
Pfam	UHGV-0032878_53	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0032878_53	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_54	phrog_3206	77.4	1.3e-22	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032878_54	UniRef90_UPI00189799E8	241.0	0	four helix bundle protein	N/A
eggNOG-mapper	UHGV-0032878_54	658655.HMPREF0988_00872	192.0	0	N/A	N/A
Pfam	UHGV-0032878_54	PF05635	N/A	N/A	23S rRNA-intervening sequence protein	23S_rRNA_IVP
structural_annotation	UHGV-0032878_54	PF05635,NF033474,COG3308	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_55	phrog_9958	173.6	0	N/A	unknown function
UniRef90	UHGV-0032878_55	UniRef90_F7JKD2	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032878_55	658655.HMPREF0988_00873	219.0	0	N/A	N/A
Pfam	UHGV-0032878_55	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0032878_55	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_56	phrog_9958	83.4	2.1e-24	N/A	unknown function
UniRef90	UHGV-0032878_56	UniRef90_R5L718	87.4	7.27e-18	N/A	N/A
eggNOG-mapper	UHGV-0032878_56	658655.HMPREF0988_00874	148.0	3.25942e-42	N/A	N/A
structural_annotation	UHGV-0032878_56	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_57	phrog_10469	275.5	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032878_57	UniRef90_A0A396PTZ3	334.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0032878_57	536232.CLM_1634	272.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0032878_57	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0032878_57	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0032878_57	PF09681,PF09524,TIGR01714,TIGR02220,COG3756	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_58	phrog_3490	128.8	2.3e-38	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032878_58	UniRef90_A0A173SAL3	372.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0032878_58	1232453.BAIF02000057_gene1143	218.0	0	N/A	N/A
Pfam	UHGV-0032878_58	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0032878_58	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032878_59	PF19962,COG1579	N/A	N/A	N/A	N/A
KOfam	UHGV-0032878_62	K03111	137.9	9.99995e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0032878_62	phrog_44	144.6	5.29691e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032878_62	UniRef90_A0A415D4W7	234.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0032878_62	411460.RUMTOR_02590	203.0	0	N/A	N/A
Pfam	UHGV-0032878_62	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0032878_62	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0032878_62	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0032878_62	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0032878_62	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_63	phrog_24386	137.9	6.40001e-41	N/A	unknown function
eggNOG-mapper	UHGV-0032878_63	397290.C810_01513	193.0	0	COG NOG28949 non supervised orthologous group	N/A
COG	UHGV-0032878_63	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
structural_annotation	UHGV-0032878_63	TIGR01689,COG0241	N/A	N/A	N/A	N/A
KOfam	UHGV-0032878_64	K06167	57.4	2.1e-16	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0032878_64	phrog_392	179.2	0	metal-dependent hydrolase	other
UniRef90	UHGV-0032878_64	UniRef90_A0A415D4T3	390.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0032878_64	658655.HMPREF0988_00882	239.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0032878_64	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
dbAPIS	UHGV-0032878_64	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-0032878_64	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0032878_64	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-0032878_65	K06940	55.9	8.8e-16	N/A	N/A
PHROG	UHGV-0032878_65	phrog_32498	154.2	0	N/A	unknown function
UniRef90	UHGV-0032878_65	UniRef90_A0A415D557	256.0	0	YkgJ family cysteine cluster protein	N/A
eggNOG-mapper	UHGV-0032878_65	476272.RUMHYD_03327	126.0	1.11e-35	Putative zinc- or iron-chelating domain	N/A
Pfam	UHGV-0032878_65	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
PHROG	UHGV-0032878_66	phrog_561	167.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032878_66	UniRef90_UPI001F3F277E	179.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0032878_66	537013.CLOSTMETH_01715	179.0	0	N/A	N/A
Pfam	UHGV-0032878_66	PF03837	N/A	N/A	RecT family	RecT
PHROG	UHGV-0032878_67	phrog_4652	46.8	0.00000000000039	N/A	unknown function
eggNOG-mapper	UHGV-0032878_67	1041147.AUFB01000014_gene329	61.2	0.0000000104	N/A	N/A
structural_annotation	UHGV-0032878_67	TIGR01898,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0032878_68	phrog_15946	66.5	3.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0032878_68	1410634.JHVD01000028_gene2101	51.2	0.00000457	N/A	N/A