UHGV-0032880 (vOTU-142469)

Viral Genome: UHGV-0032880

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0032880
vOTU ID	vOTU-142469
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_G_18_2610__NODE_3098_length_31210_cov_3.873061
Associated BioSample	SAMEA4766357
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.94 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.67
Jumbo phage	No

Genome content
Genome length (bp)	31,210
GC content	57.11%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	92%
Average CDS length (bps)	530.61
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0032880_2	K22300	40.7	0.000000000041	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0032880_2	UniRef90_A0A7X3AR65	60.5	0.000000000134	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0032880_2	203123.OEOE_0099	55.8	0.000000011	Helix-turn-helix domain	N/A
Pfam	UHGV-0032880_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032880_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0032880_2	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032880_6	UniRef90_UPI001914F249	49.3	0.00000429	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0032880_6	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
Pfam	UHGV-0032880_8	PF09943	N/A	N/A	N/A	DUF2175
PHROG	UHGV-0032880_9	phrog_1123	60.6	2e-17	N/A	unknown function
UniRef90	UHGV-0032880_9	UniRef90_R6TS56	70.5	0.0000000000000886	Sensory box histidine kinase/response regulator C-part	N/A
eggNOG-mapper	UHGV-0032880_9	411483.FAEPRAA2165_01885	77.0	3.3e-17	N/A	N/A
structural_annotation	UHGV-0032880_9	PF03551,TIGR02719,COG1695	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032880_10	1041142.ATTP01000043_gene5324	60.1	0.0000000701	N/A	N/A
structural_annotation	UHGV-0032880_10	TIGR01913	N/A	N/A	N/A	N/A
PHROG	UHGV-0032880_11	phrog_72	43.6	0.0000000000033	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032880_11	UniRef90_UPI000C7BF263	80.1	9.07e-16	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0032880_11	1507.HMPREF0262_00432	77.4	0.00000000000000195	N/A	N/A
structural_annotation	UHGV-0032880_11	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0032880_12	phrog_7370	50.8	0.000000000000021	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032880_12	UniRef90_A0A7C6TX57	99.4	5.65e-25	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0032880_12	1232449.BAHV02000016_gene1841	80.1	4.49e-18	HNH nucleases	N/A
Pfam	UHGV-0032880_12	PF14279	N/A	N/A	HNH endonuclease	HNH_5
KOfam	UHGV-0032880_13	K03111	141.5	8.00001e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0032880_13	phrog_44	137.6	7.00005e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032880_13	UniRef90_G4L1H2	155.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0032880_13	693746.OBV_19910	155.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0032880_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0032880_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0032880_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0032880_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0032880_13	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0032880_14	phrog_10469	105.6	4.3e-31	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032880_14	UniRef90_UPI00085BD5C4	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032880_14	742740.HMPREF9474_03492	127.0	1.13e-32	DnaD domain protein	N/A
Pfam	UHGV-0032880_14	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0032880_14	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0032880_14	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0032880_15	K01160	48.9	0.00000000000016	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
UniRef90	UHGV-0032880_15	UniRef90_A0A1V5ZUM0	112.0	3.12e-29	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0032880_15	469604.HMPREF0946_00819	56.2	0.0000000296	N/A	N/A
structural_annotation	UHGV-0032880_15	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0032880_16	phrog_374	63.1	3.5e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032880_16	UniRef90_A0A328KEI3	77.0	0.0000000000000506	AP2/ERF domain-containing protein	N/A
eggNOG-mapper	UHGV-0032880_16	1423807.BACO01000036_gene1075	70.9	0.000000000000812	N/A	N/A
KOfam	UHGV-0032880_17	K03465	194.5	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0032880_17	phrog_85	140.8	4.40008e-42	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032880_17	UniRef90_A0A2A7B932	314.0	0	Thymidylate synthase (FAD)	N/A
eggNOG-mapper	UHGV-0032880_17	397290.C810_05227	252.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0032880_17	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0032880_17	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0032880_17	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0032880_17	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0032880_19	phrog_474	104.2	1.8e-30	phosphofructokinase	other
UniRef90	UHGV-0032880_19	UniRef90_UPI00103054B4	100.0	1.43e-25	N/A	N/A
eggNOG-mapper	UHGV-0032880_19	1095750.HMPREF9970_1026	86.3	7.55e-21	N/A	N/A
Pfam	UHGV-0032880_19	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0032880_19	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0032880_20	K00390	111.8	4.2e-33	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0032880_20	phrog_424	139.0	2.70002e-41	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0032880_20	UniRef90_UPI00164AFBC1	433.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0032880_20	1408437.JNJN01000032_gene2312	423.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0032880_20	BrxP_00001	67.3	9.8e-21	BrxP	BREX
Pfam	UHGV-0032880_20	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0032880_20	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0032880_20	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0032880_23	phrog_38832	51.7	0.000000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0032880_23	665956.HMPREF1032_00143	57.8	0.0000000565	N/A	N/A
structural_annotation	UHGV-0032880_23	PF11717,TIGR02450	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032880_25	UniRef90_A0A8D9PDK2	56.6	0.0000000343	Zinc-ribbon containing domain	N/A
eggNOG-mapper	UHGV-0032880_28	1304866.K413DRAFT_4686	71.6	6.5e-16	N/A	N/A
UniRef90	UHGV-0032880_29	UniRef90_A0A1Q9JGI6	130.0	5.21e-36	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0032880_29	1118055.CAGU01000028_gene99	104.0	1.26e-26	N/A	N/A
structural_annotation	UHGV-0032880_29	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032880_31	693746.OBV_25230	65.1	0.000000000011	N/A	N/A
structural_annotation	UHGV-0032880_31	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0032880_33	K06909	133.9	1.3e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0032880_33	phrog_979	137.2	6.09985e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0032880_33	UniRef90_R5AXD9	575.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0032880_33	1410650.JHWL01000003_gene2834	515.0	0	N/A	N/A
Pfam	UHGV-0032880_33	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0032880_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0032880_33	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0032880_34	phrog_156	324.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0032880_34	1410650.JHWL01000003_gene2833	519.0	0	N/A	N/A
structural_annotation	UHGV-0032880_34	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
Pfam	UHGV-0032880_35	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0032880_35	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032880_35	PF04327,NF011122,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0032880_36	phrog_13908	263.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0032880_36	1410650.JHWL01000003_gene2831	181.0	0	N/A	N/A
PHROG	UHGV-0032880_37	phrog_1357	283.2	0	major head protein	head and packaging
UniRef90	UHGV-0032880_37	UniRef90_A0A2V2GQW4	406.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0032880_37	748224.HMPREF9436_02545	369.0	0	N/A	N/A
Pfam	UHGV-0032880_37	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0032880_37	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0032880_37	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0032880_38	phrog_15239	46.0	0.00000000000078	N/A	unknown function
PHROG	UHGV-0032880_39	phrog_12105	65.2	9.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0032880_39	1519439.JPJG01000060_gene1891	49.7	0.00000566	N/A	N/A
PHROG	UHGV-0032880_42	phrog_10898	214.2	0	N/A	unknown function
UniRef90	UHGV-0032880_42	UniRef90_A0A7U3NJT3	125.0	3.64e-32	Putative Ig-like domain-containing protein	N/A
COG	UHGV-0032880_42	COG4632	N/A	N/A	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	N/A
structural_annotation	UHGV-0032880_42	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032880_43	PF16408,NF033510	N/A	N/A	N/A	N/A
Pfam	UHGV-0032880_44	PF00404	N/A	N/A	Dockerin type I domain	Dockerin_1
COG	UHGV-0032880_44	COG4932	N/A	N/A	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	N/A
PHROG	UHGV-0032880_47	phrog_4105	50.7	0.000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0032880_47	411460.RUMTOR_01326	50.8	0.00000135	N/A	N/A
PHROG	UHGV-0032880_49	phrog_13256	61.7	7.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0032880_49	1226322.HMPREF1545_02800	70.5	0.00000000000000129	N/A	N/A
KOfam	UHGV-0032880_50	K01448	58.7	9.9e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0032880_50	phrog_435	105.6	4.6e-31	endolysin	lysis
UniRef90	UHGV-0032880_50	UniRef90_UPI00164BDABC	97.4	1.03e-18	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0032880_50	999413.HMPREF1094_01993	110.0	3.09e-24	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0032880_50	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0032880_50	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-0032880_50	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0032880_50	PF01520,PF01832,NF038016,NF038140,NF041850,COG1705,COG0860,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-0032880_51	phrog_511	137.1	9.19994e-41	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0032880_51	1226322.HMPREF1545_00785	165.0	1.07e-40	N/A	N/A
structural_annotation	UHGV-0032880_51	PF11134,NF038015,TIGR03721,COG3823	N/A	N/A	N/A	N/A