UHGV-0033514 (vOTU-009567)

Viral Genome: UHGV-0033514

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0033514
vOTU ID	vOTU-009567
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_G_7_2399__NODE_1873_length_38221_cov_11.628775
Associated BioSample	SAMEA4766273
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.81
Jumbo phage	No

Genome content
Genome length (bp)	38,221
GC content	50.31%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	91%
Average CDS length (bps)	598.60
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0033514_1	phrog_14030	139.6	1.49995e-41	N/A	unknown function
UniRef90	UHGV-0033514_1	UniRef90_UPI001F3A7341	248.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0033514_1	608534.GCWU000341_02268	217.0	0	N/A	N/A
Pfam	UHGV-0033514_1	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
structural_annotation	UHGV-0033514_1	PF18342,NF041850,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_2	phrog_199	85.5	5.4e-25	holin	lysis
UniRef90	UHGV-0033514_2	UniRef90_A0A417W6L6	213.0	0	Holin	N/A
eggNOG-mapper	UHGV-0033514_2	742740.HMPREF9474_02333	209.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0033514_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0033514_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0033514_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0033514_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_3	phrog_8908	41.8	0.000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0033514_4	610130.Closa_0760	60.5	0.000000000439	N/A	N/A
KOfam	UHGV-0033514_7	K04763	218.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0033514_7	phrog_1	159.9	0	integrase	integration and excision
UniRef90	UHGV-0033514_7	UniRef90_A0A416L1N4	508.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0033514_7	610130.Closa_3343	475.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0033514_7	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0033514_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0033514_7	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0033514_7	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0033514_8	K19721	119.4	1.2e-35	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0033514_8	phrog_5073	117.2	0	tail fiber protein	tail
Pfam	UHGV-0033514_8	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0033514_9	K16628	138.8	1.90002e-41	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0033514_9	phrog_8745	124.0	1.1e-37	tail fiber protein	tail
Pfam	UHGV-0033514_9	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0033514_10	phrog_1067	297.5	0	minor head protein	head and packaging
UniRef90	UHGV-0033514_10	UniRef90_UPI000C7C59F9	434.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0033514_10	1123263.AUKY01000068_gene489	335.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0033514_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0033514_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0033514_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0033514_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_11	phrog_33	79.3	7.6e-23	distal tail protein Dit	tail
UniRef90	UHGV-0033514_11	UniRef90_A0A1C5W6B6	163.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0033514_11	1160721.RBI_I01575	124.0	3.49e-32	Phage tail protein	N/A
COG	UHGV-0033514_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0033514_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_12	phrog_6900	207.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0033514_12	UniRef90_A0A1C5Y9X6	291.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0033514_12	482234.SCAZ3_03770	320.0	0	phage tail tape measure protein	N/A
COG	UHGV-0033514_12	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0033514_12	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_13	phrog_1633	156.3	0	N/A	unknown function
UniRef90	UHGV-0033514_13	UniRef90_A0A139QHL2	131.0	4.11e-37	N/A	N/A
eggNOG-mapper	UHGV-0033514_13	585203.SMSK564_1277	125.0	1.48e-35	N/A	N/A
Pfam	UHGV-0033514_13	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0033514_13	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_14	phrog_1526	77.6	1.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0033514_14	665950.HMPREF1025_02524	71.2	0.00000000000000372	N/A	N/A
PHROG	UHGV-0033514_15	phrog_117	177.3	0	major tail protein	tail
UniRef90	UHGV-0033514_15	UniRef90_A0A356C4M0	225.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0033514_15	1121864.OMO_02158	209.0	0	domain, Protein	N/A
COG	UHGV-0033514_15	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033514_15	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_16	phrog_123	62.9	5.8e-18	tail terminator	connector
UniRef90	UHGV-0033514_16	UniRef90_F3MWA9	103.0	1.33e-26	N/A	N/A
eggNOG-mapper	UHGV-0033514_16	1280698.AUJS01000007_gene1043	106.0	1.92e-28	N/A	N/A
structural_annotation	UHGV-0033514_16	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_17	phrog_387	77.8	1e-22	neck protein	connector
eggNOG-mapper	UHGV-0033514_17	663952.SDD27957_07245	80.5	4.38e-19	N/A	N/A
PHROG	UHGV-0033514_18	phrog_501	74.8	1.1e-21	head closure Hc1	connector
eggNOG-mapper	UHGV-0033514_18	748224.HMPREF9436_00693	131.0	2.26e-38	N/A	N/A
structural_annotation	UHGV-0033514_18	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_19	phrog_137	47.5	0.00000000000025	head-tail adaptor Ad1	connector
UniRef90	UHGV-0033514_19	UniRef90_R6G3G4	114.0	1.35e-30	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0033514_19	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_20	phrog_544	95.2	7.2e-28	major head protein	head and packaging
UniRef90	UHGV-0033514_20	UniRef90_A0A810PZM2	144.0	6.55e-37	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0033514_20	1347392.CCEZ01000005_gene1236	127.0	3.18e-32	N/A	N/A
structural_annotation	UHGV-0033514_20	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_21	phrog_1793	91.1	1.3e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-0033514_21	UniRef90_UPI001C03A2F1	129.0	3.36e-35	N/A	N/A
eggNOG-mapper	UHGV-0033514_21	1123263.AUKY01000068_gene501	124.0	1.42e-33	N/A	N/A
PHROG	UHGV-0033514_22	phrog_3675	101.7	3.4e-30	N/A	unknown function
UniRef90	UHGV-0033514_22	UniRef90_A0A1H9BUF5	115.0	2.94e-31	YjcQ protein	N/A
eggNOG-mapper	UHGV-0033514_22	1120978.KB894082_gene1061	121.0	3.56e-34	YjcQ protein	N/A
Pfam	UHGV-0033514_22	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0033514_22	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033514_23	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_24	phrog_193	120.9	1.9e-35	head maturation protease	head and packaging
UniRef90	UHGV-0033514_24	UniRef90_A0A6N8H118	229.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0033514_24	748224.HMPREF9436_01469	241.0	0	N/A	N/A
COG	UHGV-0033514_24	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0033514_25	phrog_104	204.9	0	portal protein	head and packaging
UniRef90	UHGV-0033514_25	UniRef90_UPI0009847372	630.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0033514_25	1123263.AUKY01000112_gene2059	606.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0033514_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0033514_25	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_26	phrog_9	172.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0033514_26	UniRef90_UPI001D0087E2	700.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0033514_26	1123263.AUKY01000112_gene2060	697.0	0	phage terminase, large subunit	N/A
COG	UHGV-0033514_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0033514_26	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033514_27	UniRef90_R6GFM0	52.8	0.000000225	Conserved domain protein	N/A
structural_annotation	UHGV-0033514_27	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_28	phrog_338	54.0	0.0000000000000037	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033514_28	UniRef90_A0A3E4GMG2	178.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0033514_28	1123263.AUKY01000112_gene2062	164.0	0	N/A	N/A
UniRef90	UHGV-0033514_29	UniRef90_A0A3A9FI03	81.6	5.59e-19	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0033514_29	1304866.K413DRAFT_0813	72.4	3.66e-16	N/A	N/A
PHROG	UHGV-0033514_31	phrog_11237	105.1	6.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0033514_31	1235798.C817_04578	134.0	1.2e-38	N/A	N/A
eggNOG-mapper	UHGV-0033514_35	1410632.JHWW01000004_gene1673	56.6	0.000000028	N/A	N/A
KOfam	UHGV-0033514_37	K00571	120.5	1.7e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0033514_37	phrog_67	108.8	2.3e-32	DNA methyltransferase	other
UniRef90	UHGV-0033514_37	UniRef90_A0A396Q1C9	454.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0033514_37	411468.CLOSCI_00299	434.0	0	DNA methylase	N/A
PADLOC	UHGV-0033514_37	MTase_II_00157	96.1	2.9e-28	Type II methyltransferase	RM
Pfam	UHGV-0033514_37	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0033514_37	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0033514_37	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0033514_39	K17680	244.4	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0033514_39	phrog_239	250.9	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033514_39	UniRef90_A0A3E2WBM8	649.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0033514_39	1256908.HMPREF0373_00663	625.0	0	N/A	N/A
Pfam	UHGV-0033514_39	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0033514_39	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0033514_39	PF03796,PF19898,MF_04154,TIGR03877,TIGR01391,COG0467,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_40	phrog_2514	119.6	2.6e-35	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033514_40	UniRef90_A0A6G4ED49	153.0	6.22177e-43	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0033514_40	1415775.U729_2588	148.0	5.13996e-42	DnaD domain protein	N/A
COG	UHGV-0033514_40	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0033514_41	phrog_3490	121.2	7.4e-36	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033514_41	UniRef90_A0A173R9N6	253.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0033514_41	476272.RUMHYD_02832	253.0	0	ERCC4 domain	N/A
Pfam	UHGV-0033514_41	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0033514_41	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0033514_41	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_42	phrog_18107	103.1	3.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0033514_42	476272.RUMHYD_02831	178.0	0	N/A	N/A
structural_annotation	UHGV-0033514_42	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_43	phrog_2872	186.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033514_43	UniRef90_R6SKG3	311.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0033514_43	1304866.K413DRAFT_0827	287.0	0	AAA domain	N/A
Pfam	UHGV-0033514_43	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0033514_43	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033514_50	PF21715,COG4901	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033514_52	UniRef90_UPI001D09848E	99.0	6.16e-26	N/A	N/A
eggNOG-mapper	UHGV-0033514_52	1121335.Clst_0370	91.7	7.77e-24	N/A	N/A
structural_annotation	UHGV-0033514_52	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0033514_53	K22300	63.3	5.2e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0033514_53	phrog_8	89.2	5.8e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-0033514_53	UniRef90_UPI000488586D	136.0	4.09e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0033514_53	445974.CLORAM_02966	109.0	4.37e-29	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0033514_53	retron_type_VI_hth_cluster2_1	40.5	0.000000000059	N/A	Retron
Pfam	UHGV-0033514_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0033514_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0033514_53	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0033514_54	phrog_20886	49.2	0.000000000000053	N/A	unknown function
structural_annotation	UHGV-0033514_54	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0033514_55	K14623	379.1	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0033514_55	phrog_8036	390.3	0	N/A	unknown function
UniRef90	UHGV-0033514_55	UniRef90_A0A1M6TGW2	487.0	0	DNA-damage-inducible protein D	N/A
eggNOG-mapper	UHGV-0033514_55	1514668.JOOA01000001_gene65	400.0	0	BRO family, N-terminal domain	N/A
AcrCatalog	UHGV-0033514_55	cluster_17589	154.0	0	NA	N/A
PADLOC	UHGV-0033514_55	Specificity_I_00032	381.9	0	Type I specificity subunit	RM
Pfam	UHGV-0033514_55	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0033514_55	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0033514_55	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0033514_55	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0033514_56	K14059	134.2	1.6e-39	int; integrase	N/A
PHROG	UHGV-0033514_56	phrog_1	133.0	2.8e-39	integrase	integration and excision
UniRef90	UHGV-0033514_56	UniRef90_U2UCK2	267.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0033514_56	1321782.HMPREF1986_00315	267.0	0	Phage integrase family	N/A
Pfam	UHGV-0033514_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0033514_56	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0033514_56	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0033514_57	K23779	41.4	0.000000000027	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0033514_57	UniRef90_A0A356KZI4	233.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0033514_57	1410612.JNKO01000022_gene889	119.0	8.45e-32	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0033514_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0033514_58	K03701	1588.1	0	uvrA; excinuclease ABC subunit A	N/A
PHROG	UHGV-0033514_58	phrog_21263	1402.3	0	N/A	unknown function
UniRef90	UHGV-0033514_58	UniRef90_W3AKP2	1663.0	0	UvrABC system protein A	N/A
eggNOG-mapper	UHGV-0033514_58	1408311.JNJM01000016_gene3479	1670.0	0	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate	N/A
Pfam	UHGV-0033514_58	PF17760	N/A	N/A	UvrA interaction domain	UvrA_inter
Pfam	UHGV-0033514_58	PF17755	N/A	N/A	UvrA DNA-binding domain	UvrA_DNA-bind
Pfam	UHGV-0033514_58	PF12399	N/A	N/A	Branched-chain amino acid ATP-binding cassette transporter	BCA_ABC_TP_C
Pfam	UHGV-0033514_58	PF13555	N/A	N/A	P-loop containing region of AAA domain	AAA_29
Pfam	UHGV-0033514_58	PF00005	N/A	N/A	ABC transporter	ABC_tran
NCBIFam	UHGV-0033514_58	NF001503.0	N/A	N/A	excinuclease ABC subunit UvrA	N/A
COG	UHGV-0033514_58	COG0178	N/A	N/A	Excinuclease UvrABC ATPase subunit	N/A
HAMAP	UHGV-0033514_58	MF_00205	N/A	N/A	UvrABC system protein A [uvrA]	N/A
structural_annotation	UHGV-0033514_58	PF17755,PF13304,MF_00205,NF001503,COG0178	N/A	N/A	N/A	N/A