UHGV-0033700 (vOTU-009970)

Viral Genome: UHGV-0033700

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0033700
vOTU ID	vOTU-009970
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_I_19_2477__NODE_2643_length_40227_cov_24.465903
Associated BioSample	SAMEA4766288
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.87 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.82
Jumbo phage	No

Genome content
Genome length (bp)	40,227
GC content	39.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	93%
Average CDS length (bps)	835.33
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0033700_1	K00703	127.4	9.8e-38	glgA; starch synthase [EC:2.4.1.21]	N/A
UniRef90	UHGV-0033700_1	UniRef90_UPI0018AB281D	268.0	0	glycogen/starch synthase	N/A
eggNOG-mapper	UHGV-0033700_1	1504823.CCMM01000012_gene2045	277.0	0	glycogen (starch) synthase activity	N/A
Pfam	UHGV-0033700_1	PF08323	N/A	N/A	Starch synthase catalytic domain	Glyco_transf_5
COG	UHGV-0033700_1	COG0297	N/A	N/A	Glycogen synthase	N/A
PHROG	UHGV-0033700_2	phrog_21357	121.2	6.9e-36	endolysin	lysis
UniRef90	UHGV-0033700_2	UniRef90_A0A417V8P8	459.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0033700_2	693746.OBV_19030	154.0	1.06499e-43	CHAP domain	N/A
Pfam	UHGV-0033700_2	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0033700_2	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0033700_2	PF01471,PF00877,TIGR02594,TIGR03979,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_3	phrog_199	70.8	1.6e-20	holin	lysis
UniRef90	UHGV-0033700_3	UniRef90_A0A417V866	300.0	0	Holin	N/A
eggNOG-mapper	UHGV-0033700_3	411462.DORLON_00766	186.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0033700_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0033700_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0033700_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0033700_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_4	phrog_2566	77.6	1.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0033700_4	1232453.BAIF02000058_gene1639	62.0	0.00000000000974	N/A	N/A
PHROG	UHGV-0033700_5	phrog_16267	186.2	0	N/A	unknown function
UniRef90	UHGV-0033700_5	UniRef90_A0A417V835	1858.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0033700_5	1232453.BAIF02000058_gene1641	209.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0033700_5	PF21446	N/A	N/A	Long-tail fiber proximal subunit, C-terminal domain	Gp34_C
Pfam	UHGV-0033700_5	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0033700_5	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0033700_6	phrog_1401	56.5	4.9e-16	N/A	unknown function
UniRef90	UHGV-0033700_6	UniRef90_UPI001A9A8A65	51.6	0.00000925	N/A	N/A
structural_annotation	UHGV-0033700_6	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_7	phrog_1194	79.4	3.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0033700_7	33035.JPJF01000093_gene2242	130.0	7.61e-38	N/A	N/A
structural_annotation	UHGV-0033700_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_8	phrog_1535	257.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0033700_8	UniRef90_A0A1C5PIN9	519.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0033700_8	742740.HMPREF9474_03514	406.0	0	tape measure	N/A
COG	UHGV-0033700_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0033700_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_9	phrog_8355	101.5	3e-30	N/A	unknown function
UniRef90	UHGV-0033700_9	UniRef90_UPI001D0684E3	122.0	1.26e-34	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0033700_9	33035.JPJF01000093_gene2244	95.5	6.39e-25	N/A	N/A
PHROG	UHGV-0033700_10	phrog_8300	92.0	4.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0033700_10	33035.JPJF01000093_gene2245	102.0	6.05e-27	N/A	N/A
structural_annotation	UHGV-0033700_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_11	phrog_820	125.7	2.3e-37	major tail protein	tail
eggNOG-mapper	UHGV-0033700_11	1282664.H354_06691	204.0	0	N/A	N/A
structural_annotation	UHGV-0033700_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_12	phrog_2595	104.2	9.1e-31	head-tail connector protein	connector
UniRef90	UHGV-0033700_12	UniRef90_UPI001D0627B3	202.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0033700_12	679192.HMPREF9013_1297	140.0	5.96e-41	N/A	N/A
Pfam	UHGV-0033700_12	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0033700_12	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_13	phrog_556	53.1	0.0000000000000049	minor head protein	head and packaging
eggNOG-mapper	UHGV-0033700_13	742740.HMPREF9474_03509	160.0	0	N/A	N/A
PHROG	UHGV-0033700_14	phrog_8710	148.0	2.10195e-44	N/A	unknown function
eggNOG-mapper	UHGV-0033700_14	483218.BACPEC_01152	143.0	4.9606e-43	N/A	N/A
structural_annotation	UHGV-0033700_14	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_15	phrog_541	69.5	4.2e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0033700_15	742740.HMPREF9474_03507	133.0	1.41e-38	N/A	N/A
PHROG	UHGV-0033700_16	phrog_422	272.3	0	major head protein	head and packaging
UniRef90	UHGV-0033700_16	UniRef90_A0A417V845	630.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0033700_16	663278.Ethha_1589	409.0	0	N/A	N/A
structural_annotation	UHGV-0033700_16	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_17	phrog_2303	145.7	3.09687e-43	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0033700_17	742740.HMPREF9474_03504	173.0	0	N/A	N/A
structural_annotation	UHGV-0033700_18	PF20873	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_20	phrog_581	256.4	0	minor head protein	head and packaging
UniRef90	UHGV-0033700_20	UniRef90_A0A417V7Z4	1007.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0033700_20	33035.JPJF01000093_gene2255	663.0	0	N/A	N/A
Pfam	UHGV-0033700_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0033700_20	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0033700_20	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0033700_20	PF06152,PF03496,MF_04139,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_21	phrog_533	281.1	0	portal protein	head and packaging
UniRef90	UHGV-0033700_21	UniRef90_A0A417V837	1061.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0033700_21	33035.JPJF01000093_gene2257	592.0	0	N/A	N/A
structural_annotation	UHGV-0033700_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0033700_22	K06909	102.4	5.1e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0033700_22	phrog_2	73.4	4.5e-21	terminase large subunit	head and packaging
UniRef90	UHGV-0033700_22	UniRef90_A0A417V8L6	922.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0033700_22	1304866.K413DRAFT_0811	738.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0033700_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0033700_22	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0033700_23	K07474	132.7	4.7e-39	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0033700_23	phrog_51	149.0	2.24208e-44	terminase small subunit	head and packaging
UniRef90	UHGV-0033700_23	UniRef90_A0A417V811	312.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0033700_23	1298920.KI911353_gene4857	213.0	0	Terminase small subunit	N/A
Pfam	UHGV-0033700_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0033700_23	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0033700_23	PF03592,COG3728	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033700_24	UniRef90_A0A374ABG0	98.2	2.24e-20	N/A	N/A
eggNOG-mapper	UHGV-0033700_24	693746.OBV_43160	134.0	1.37e-34	N/A	N/A
Pfam	UHGV-0033700_24	PF10987	N/A	N/A	N/A	DUF2806
structural_annotation	UHGV-0033700_24	PF10987,TIGR03899	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_25	phrog_36	51.3	0.000000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0033700_25	UniRef90_UPI001BAD6CF7	186.0	0	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0033700_25	33035.JPJF01000107_gene434	96.7	9.01e-24	Sigma-70, region 4	N/A
Pfam	UHGV-0033700_25	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-0033700_25	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-0033700_25	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_26	phrog_31515	134.2	1.7e-40	N/A	unknown function
PHROG	UHGV-0033700_27	phrog_17690	178.3	0	N/A	unknown function
UniRef90	UHGV-0033700_27	UniRef90_A0A6L5XWF4	116.0	3.41e-31	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0033700_27	476272.RUMHYD_03925	101.0	4.92e-26	N/A	N/A
KOfam	UHGV-0033700_28	K14440	114.9	3e-34	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0033700_28	phrog_62	407.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033700_28	UniRef90_A0A173S305	914.0	0	DNA methylase	N/A
eggNOG-mapper	UHGV-0033700_28	469618.FVAG_01298	595.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0033700_28	DpdE_00010	76.7	3.3e-22	DpdE	DPD
Pfam	UHGV-0033700_28	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0033700_28	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0033700_28	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0033700_28	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_29	phrog_93	72.9	4.4e-21	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033700_29	UniRef90_A0A173S1G6	213.0	0	VRR-NUC domain	N/A
eggNOG-mapper	UHGV-0033700_29	86416.Clopa_0565	103.0	2.58e-27	VRR-NUC domain-containing protein	N/A
structural_annotation	UHGV-0033700_29	PF18741	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_30	phrog_256	1059.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033700_30	UniRef90_A0A173S1C5	1645.0	0	Predicted P-loop ATPase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0033700_30	1321778.HMPREF1982_02544	942.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0033700_30	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0033700_30	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0033700_30	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0033700_31	K02334	894.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0033700_31	phrog_17	410.6	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033700_31	UniRef90_A0A173S361	1327.0	0	DNA polymerase I, thermostable	N/A
eggNOG-mapper	UHGV-0033700_31	86416.Clopa_0561	747.0	0	DNA polymerase	N/A
Pfam	UHGV-0033700_31	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0033700_31	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0033700_31	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_32	phrog_112	216.1	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033700_32	UniRef90_UPI0009F98B20	232.0	0	N/A	N/A
eggNOG-mapper	UHGV-0033700_32	1449126.JQKL01000006_gene839	224.0	0	N/A	N/A
Pfam	UHGV-0033700_32	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0033700_32	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_33	phrog_69	332.9	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033700_33	UniRef90_R7MZ29	391.0	0	N/A	N/A
eggNOG-mapper	UHGV-0033700_33	469618.FVAG_01292	370.0	0	N/A	N/A
Pfam	UHGV-0033700_33	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0033700_33	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0033700_33	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0033700_34	phrog_18562	158.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0033700_34	717606.PaecuDRAFT_3099	72.0	0.000000000000117	N/A	N/A
KOfam	UHGV-0033700_39	K22300	42.4	0.000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0033700_39	phrog_8	51.2	0.000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0033700_39	UniRef90_A0A1Q2C3Y4	239.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0033700_39	748224.HMPREF9436_01450	95.9	1.57e-23	N/A	N/A
Pfam	UHGV-0033700_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0033700_39	PF01381,PF12728,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0033700_41	K22299	49.2	0.00000000000012	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0033700_41	phrog_8	46.2	0.00000000000088	transcriptional regulator	transcription regulation
UniRef90	UHGV-0033700_41	UniRef90_UPI001570EF62	160.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0033700_41	411490.ANACAC_00814	110.0	3.29e-31	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0033700_41	retron_type_VI_hth_cluster2_1	43.0	0.000000000013	N/A	Retron
Pfam	UHGV-0033700_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0033700_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0033700_42	K01356	143.0	3.50044e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0033700_42	phrog_4	128.4	6e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0033700_42	UniRef90_UPI00156D79C9	389.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0033700_42	411490.ANACAC_00815	337.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0033700_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0033700_42	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0033700_42	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0033700_42	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033700_43	UniRef90_A0A173RTG3	414.0	0	Bacterial Ig-like domain (Group 2)	N/A
eggNOG-mapper	UHGV-0033700_43	1449050.JNLE01000003_gene3872	138.0	9.57e-38	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0033700_43	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
structural_annotation	UHGV-0033700_43	PF02368,NF005261,COG3121	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0033700_44	1410624.JNKK01000014_gene1631	72.4	0.0000000000401	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0033700_44	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0033700_44	COG2304	N/A	N/A	Secreted protein containing bacterial Ig-like domain and vWFA domain	N/A
KOfam	UHGV-0033700_45	K14059	94.8	1.4e-27	int; integrase	N/A
PHROG	UHGV-0033700_45	phrog_1	128.6	6.9e-38	integrase	integration and excision
UniRef90	UHGV-0033700_45	UniRef90_A0A173S3V2	698.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0033700_45	742740.HMPREF9474_02388	424.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0033700_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0033700_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0033700_45	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A