UHGV-0033702 (vOTU-084180)

Viral Genome: UHGV-0033702

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0033702
vOTU ID	vOTU-084180
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_I_19_2477__NODE_2606_length_40646_cov_20.001060
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9801
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.11
Jumbo phage	No

Genome content
Genome length (bp)	40,646
GC content	53.03%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	88%
Average CDS length (bps)	588.39
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0033702_1	phrog_4433	122.0	5.5e-36	N/A	unknown function
eggNOG-mapper	UHGV-0033702_1	439375.Oant_2324	90.1	1.63e-19	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0033702_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0033702_1	PF12120,NF000066	N/A	N/A	N/A	N/A
KOfam	UHGV-0033702_3	K07741	137.8	1.6e-40	antB; anti-repressor protein	N/A
PHROG	UHGV-0033702_3	phrog_63	109.4	4.2e-32	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0033702_3	UniRef90_A0A6N7TLD1	266.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0033702_3	1051631.F8HGQ0_9CAUD	221.0	0	DNA binding	N/A
Pfam	UHGV-0033702_3	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0033702_3	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0033702_3	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033702_4	UniRef90_UPI001956DCC9	70.9	0.00000000000000696	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0033702_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0033702_4	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033702_5	UniRef90_A0A358M3D8	81.3	3.74e-17	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0033702_5	610130.Closa_1361	60.1	0.000000000871	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0033702_5	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0033702_5	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033702_6	PF13835,TIGR01714,COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_9	phrog_1847	507.0	0	N/A	unknown function
UniRef90	UHGV-0033702_9	UniRef90_A0A3E2U209	428.0	0	N/A	N/A
eggNOG-mapper	UHGV-0033702_9	718252.FP2_06880	426.0	0	N/A	N/A
Pfam	UHGV-0033702_9	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0033702_9	PF10544	N/A	N/A	T5orf172 domain	T5orf172
COG	UHGV-0033702_9	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-0033702_9	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
KOfam	UHGV-0033702_12	K15773	41.4	0.000000000028	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0033702_12	phrog_2328	41.9	0.00000000001	transcriptional repressor	transcription regulation
UniRef90	UHGV-0033702_12	UniRef90_A0A6N7TLT0	205.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0033702_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0033702_12	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0033702_12	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0033702_13	K14059	154.8	1.4013e-45	int; integrase	N/A
PHROG	UHGV-0033702_13	phrog_1	184.4	0	integrase	integration and excision
UniRef90	UHGV-0033702_13	UniRef90_A0A174D176	566.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0033702_13	411471.SUBVAR_05137	273.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0033702_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0033702_13	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0033702_13	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033702_15	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_16	phrog_16490	52.7	0.000000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0033702_16	476272.RUMHYD_01770	56.2	0.000000596	N/A	N/A
PHROG	UHGV-0033702_20	phrog_374	66.0	2.9e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0033702_20	927704.SELR_12480	88.2	0.00000000000000104	N/A	N/A
UniRef90	UHGV-0033702_21	UniRef90_A0A1Q9JGI6	96.3	1.01e-22	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0033702_21	1033733.CAEK01000007_gene1628	100.0	5.57e-25	N/A	N/A
structural_annotation	UHGV-0033702_21	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033702_24	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_25	phrog_263	84.3	9.1e-25	holin	lysis
UniRef90	UHGV-0033702_25	UniRef90_A0A329UCA4	110.0	3.27e-30	Phage holin	N/A
eggNOG-mapper	UHGV-0033702_25	411483.FAEPRAA2165_00003	105.0	5.26e-29	SPP1 phage holin	N/A
Pfam	UHGV-0033702_25	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0033702_25	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0033702_25	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_26	phrog_4105	87.4	1.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0033702_26	718252.FP2_06480	159.0	0	N/A	N/A
KOfam	UHGV-0033702_27	K07273	179.7	0	acm; lysozyme	N/A
PHROG	UHGV-0033702_27	phrog_291	144.9	6.40393e-43	endolysin	lysis
UniRef90	UHGV-0033702_27	UniRef90_E2ZES5	310.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0033702_27	748224.HMPREF9436_00154	310.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0033702_27	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0033702_27	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0033702_27	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_28	phrog_11541	57.0	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0033702_28	411483.FAEPRAA2165_00757	168.0	6.16571e-44	N/A	N/A
Pfam	UHGV-0033702_28	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
structural_annotation	UHGV-0033702_29	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_30	phrog_18110	62.8	3.8e-18	N/A	unknown function
UniRef90	UHGV-0033702_30	UniRef90_A0A1Y3TWK1	188.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0033702_30	871584.D9ZNF0_9CAUD	58.9	0.00000152	peptidoglycan catabolic process	N/A
Pfam	UHGV-0033702_30	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
structural_annotation	UHGV-0033702_30	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_31	phrog_33	64.7	2.2e-18	distal tail protein Dit	tail
UniRef90	UHGV-0033702_31	UniRef90_R6N293	99.4	1.16e-21	Putative phage tail component domain protein	N/A
structural_annotation	UHGV-0033702_31	PF20753,PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_32	phrog_9959	76.2	2.1e-25	tail length tape measure protein	tail
UniRef90	UHGV-0033702_32	UniRef90_UPI001C038824	337.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0033702_32	411470.RUMGNA_02228	129.0	5.35e-28	tape measure	N/A
Pfam	UHGV-0033702_32	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0033702_32	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0033702_32	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0033702_32	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_33	phrog_706	113.7	1.4e-33	N/A	unknown function
UniRef90	UHGV-0033702_33	UniRef90_UPI0011AF1F88	116.0	6.71e-29	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0033702_33	663278.Ethha_0101	93.2	6.23e-21	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0033702_33	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0033702_33	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033702_34	PF20378	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033702_35	UniRef90_A0A174M1L1	100.0	1.08e-22	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0033702_35	748224.HMPREF9436_03330	152.0	7.00649e-45	N/A	N/A
structural_annotation	UHGV-0033702_35	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_36	phrog_3266	115.4	2.7e-34	tail completion	connector
UniRef90	UHGV-0033702_36	UniRef90_UPI001F2730AA	117.0	8.47e-31	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0033702_36	632245.CLP_1653	98.2	3.84e-24	N/A	N/A
structural_annotation	UHGV-0033702_36	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_37	phrog_556	90.1	1.7e-26	minor head protein	head and packaging
UniRef90	UHGV-0033702_37	UniRef90_D4K441	107.0	8.86e-27	Minor capsid	N/A
eggNOG-mapper	UHGV-0033702_37	718252.FP2_06630	107.0	1.49e-27	Minor capsid protein	N/A
Pfam	UHGV-0033702_37	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0033702_37	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_38	phrog_3366	96.0	3.6e-28	N/A	unknown function
Pfam	UHGV-0033702_38	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0033702_38	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_39	phrog_541	77.7	1.3e-22	head-tail adaptor	connector
PHROG	UHGV-0033702_40	phrog_10	190.1	0	major head protein	head and packaging
UniRef90	UHGV-0033702_40	UniRef90_A0A2A7AII3	523.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0033702_40	1120998.AUFC01000030_gene2236	407.0	0	Phage capsid family	N/A
Pfam	UHGV-0033702_40	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0033702_40	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0033702_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0033702_40	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_41	phrog_194	55.3	7.3e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0033702_41	UniRef90_A0A1C6FYX1	137.0	7.15e-38	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0033702_41	663278.Ethha_0497	139.0	2.11e-39	N/A	N/A
Pfam	UHGV-0033702_41	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0033702_41	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_42	phrog_478	126.2	1.3e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0033702_42	UniRef90_A0A373Q857	169.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0033702_42	1111121.HMPREF1247_0834	100.0	1.72e-25	N/A	N/A
PHROG	UHGV-0033702_43	phrog_581	344.6	0	minor head protein	head and packaging
UniRef90	UHGV-0033702_43	UniRef90_D4K446	580.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0033702_43	718252.FP2_06690	580.0	0	N/A	N/A
Pfam	UHGV-0033702_43	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0033702_43	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033702_43	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_44	phrog_533	353.1	0	portal protein	head and packaging
UniRef90	UHGV-0033702_44	UniRef90_A0A291T9A9	719.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0033702_44	748224.HMPREF9436_03340	715.0	0	N/A	N/A
structural_annotation	UHGV-0033702_44	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0033702_45	K06909	129.6	3e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0033702_45	phrog_10250	137.1	6.70003e-41	N/A	unknown function
UniRef90	UHGV-0033702_45	UniRef90_A0A3A6EEP8	672.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0033702_45	1226322.HMPREF1545_00043	464.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0033702_45	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0033702_45	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0033702_45	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0033702_45	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_46	phrog_2412	49.0	0.0000000000001	N/A	unknown function
structural_annotation	UHGV-0033702_48	PF17941,MF_01917,NF010490,COG3886	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033702_49	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0033702_51	K01160	58.2	2.6e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0033702_51	phrog_34	59.6	6.7e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033702_51	UniRef90_A0A844DBG8	221.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0033702_51	875454.BAEW01000002_gene491	126.0	7.71e-36	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0033702_51	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0033702_51	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0033702_51	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033702_52	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_53	phrog_15768	116.5	4.5e-35	N/A	unknown function
UniRef90	UHGV-0033702_53	UniRef90_E2ZNS6	155.0	2.46629e-43	N/A	N/A
eggNOG-mapper	UHGV-0033702_53	748224.HMPREF9436_03357	155.0	4.06377e-44	N/A	N/A
Pfam	UHGV-0033702_53	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0033702_53	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0033702_54	K03111	139.9	2.70002e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0033702_54	phrog_44	146.8	8.96831e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033702_54	UniRef90_D4K451	219.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0033702_54	718252.FP2_06770	219.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0033702_54	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0033702_54	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0033702_54	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0033702_54	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0033702_54	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0033702_55	phrog_7838	129.2	3.5e-38	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033702_55	UniRef90_A0A8D9UGW3	182.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0033702_55	742767.HMPREF9456_02052	152.0	9.94922e-44	N/A	N/A
structural_annotation	UHGV-0033702_55	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033702_56	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033702_58	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033702_59	PF10743,NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0033702_61	K13884	46.8	0.0000000000003	MARCO; macrophage receptor with collagenous structure	N/A
PHROG	UHGV-0033702_61	phrog_27197	85.0	7.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0033702_61	394503.Ccel_3068	54.3	0.00000245	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0033702_61	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0033702_61	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0033702_61	NF007410	N/A	N/A	N/A	N/A