UHGV-0033926 (vOTU-084375)

Viral Genome: UHGV-0033926

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0033926
vOTU ID	vOTU-084375
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_24_1660__NODE_1746_length_56330_cov_7.136188
Associated BioSample	SAMEA4765940
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9702
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.29
Jumbo phage	No

Genome content
Genome length (bp)	56,330
GC content	29.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	91
CDS density	92%
Average CDS length (bps)	567.56
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0033926_1	phrog_4433	133.8	1.2e-39	N/A	unknown function
UniRef90	UHGV-0033926_1	UniRef90_A0A3S4IYA1	78.6	0.0000000000000345	Gp53	N/A
eggNOG-mapper	UHGV-0033926_1	886882.PPSC2_p0048	85.1	8.66e-17	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0033926_1	PF08309	N/A	N/A	LVIVD repeat	LVIVD
COG	UHGV-0033926_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0033926_3	phrog_695	80.4	1.7e-23	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033926_3	UniRef90_R7LVM2	82.0	0.0000000000000112	Prim-Pol domain-containing protein	N/A
eggNOG-mapper	UHGV-0033926_3	472759.Nhal_1031	70.5	0.0000000000646	Phage plasmid primase P4 family	N/A
Pfam	UHGV-0033926_3	PF09250	N/A	N/A	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
COG	UHGV-0033926_3	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0033926_3	PF09250,COG4983	N/A	N/A	N/A	N/A
KOfam	UHGV-0033926_5	K00558	227.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0033926_5	phrog_116	233.2	0	DNA methyltransferase	other
UniRef90	UHGV-0033926_5	UniRef90_UPI000C7BBD9A	367.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0033926_5	1121871.AUAT01000002_gene1371	275.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0033926_5	MTase_II_00058	247.1	0	Type II methyltransferase	RM
Pfam	UHGV-0033926_5	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0033926_5	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0033926_5	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0033926_5	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_6	phrog_256	316.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033926_6	UniRef90_A0A1V5XFC1	298.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0033926_6	748727.CLJU_c36530	236.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0033926_6	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0033926_6	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0033926_6	PF05272,MF_00016,NF005477,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0033926_15	K00571	106.0	4.2e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0033926_15	phrog_67	97.8	1.5e-29	DNA methyltransferase	other
UniRef90	UHGV-0033926_15	UniRef90_A0A4U9RDY0	354.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0033926_15	910314.HMPREF9220_0636	352.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0033926_15	MTase_II_00157	84.6	4.6e-25	Type II methyltransferase	RM
Pfam	UHGV-0033926_15	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0033926_15	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0033926_15	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033926_18	PF19891,TIGR04563,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0033926_19	K14680	96.0	2.7e-28	E6.5.1.3; RNA ligase [EC:6.5.1.3]	N/A
PHROG	UHGV-0033926_19	phrog_8238	711.8	0	RNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033926_19	UniRef90_UPI000F0B19CD	595.0	0	metallophosphoesterase	N/A
eggNOG-mapper	UHGV-0033926_19	411474.COPEUT_00782	561.0	0	AAA domain	N/A
Pfam	UHGV-0033926_19	PF13671	N/A	N/A	AAA domain	AAA_33
Pfam	UHGV-0033926_19	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
Pfam	UHGV-0033926_19	PF09511	N/A	N/A	RNA ligase	RNA_lig_T4_1
COG	UHGV-0033926_19	COG0639	N/A	N/A	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	N/A
structural_annotation	UHGV-0033926_19	PF09511,PF13671,MF_04149,MF_01443,MF_03171,TIGR04075,COG5324,COG4639,COG2129	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_32	phrog_154	55.7	7.6e-16	replication initiation protein	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0033926_32	PF17399	N/A	N/A	N/A	N/A
Pfam	UHGV-0033926_34	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
PHROG	UHGV-0033926_36	phrog_4264	77.1	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0033926_36	442493.A8E2H1_BPPHE	54.7	0.0000000143	N/A	N/A
PHROG	UHGV-0033926_38	phrog_1233	79.6	4.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0033926_38	936375.HMPREF1152_1074	79.0	1.75e-17	N/A	N/A
structural_annotation	UHGV-0033926_38	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_41	phrog_7339	131.0	6.9e-39	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033926_41	UniRef90_A0A139CWM9	187.0	0	Metal-dependent hydrolase	N/A
eggNOG-mapper	UHGV-0033926_41	1150474.JQJI01000006_gene784	100.0	1.77e-22	metallophosphoesterase	N/A
Pfam	UHGV-0033926_41	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0033926_41	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0033926_41	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033926_42	UniRef90_A0A316MH63	74.3	2.79e-16	NrdD protein	N/A
eggNOG-mapper	UHGV-0033926_42	1408437.JNJN01000016_gene511	70.5	0.00000000000000142	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0033926_42	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0033926_42	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
PHROG	UHGV-0033926_44	phrog_38	158.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0033926_44	UniRef90_A0A7X2P7N6	274.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0033926_44	1121866.AUGK01000003_gene1428	248.0	0	chromosome segregation	N/A
COG	UHGV-0033926_44	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033926_44	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_45	phrog_64	159.4	0	portal protein	head and packaging
UniRef90	UHGV-0033926_45	UniRef90_R6P563	191.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0033926_45	1123263.AUKY01000015_gene1609	160.0	6.17006e-41	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0033926_45	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0033926_45	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033926_46	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_47	phrog_909	69.4	4.8e-20	major head protein	head and packaging
UniRef90	UHGV-0033926_47	UniRef90_A0A098MDH2	67.8	0.00000000000586	N/A	N/A
eggNOG-mapper	UHGV-0033926_47	268407.PWYN_15680	67.8	0.000000000000982	N/A	N/A
structural_annotation	UHGV-0033926_47	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_48	phrog_29	242.8	0	major head protein	head and packaging
UniRef90	UHGV-0033926_48	UniRef90_UPI00082C04A5	299.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0033926_48	1114972.AUAW01000005_gene303	271.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0033926_48	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0033926_48	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033926_51	UniRef90_UPI001D081DCE	52.0	0.00000172	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0033926_51	1298920.KI911353_gene2658	55.5	0.0000000145	N/A	N/A
Pfam	UHGV-0033926_51	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0033926_52	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033926_53	PF17395,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_55	phrog_158	50.7	0.000000000000036	major tail protein	tail
eggNOG-mapper	UHGV-0033926_55	1121333.JMLH01000047_gene1013	179.0	0	N/A	N/A
structural_annotation	UHGV-0033926_55	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033926_56	UniRef90_A0A374HKD4	89.4	9.18e-21	N/A	N/A
eggNOG-mapper	UHGV-0033926_56	1123263.AUKY01000015_gene1618	64.7	0.00000000000655	N/A	N/A
Pfam	UHGV-0033926_56	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0033926_56	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0033926_57	1121333.JMLH01000047_gene1011	78.2	1.52e-16	N/A	N/A
UniRef90	UHGV-0033926_58	UniRef90_W1I523	120.0	1.55e-27	Uncultured bacterium extrachromosomal DNA RGI02278	N/A
eggNOG-mapper	UHGV-0033926_58	1121866.AUGK01000003_gene1437	89.7	1.18e-16	phage tail tape measure protein	N/A
COG	UHGV-0033926_58	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0033926_58	PF20155	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033926_59	UniRef90_A0A7T8V4W7	65.5	0.00000000499	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0033926_59	702450.CUW_1845	77.0	0.0000000000000662	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-0033926_59	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-0033926_59	PF07453,PF19835,PF04936,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_60	phrog_28918	62.0	4.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0033926_60	552396.HMPREF0863_00269	98.2	6.01e-18	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0033926_60	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0033926_60	TIGR04319	N/A	N/A	N/A	N/A
Pfam	UHGV-0033926_61	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0033926_61	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_62	phrog_6616	59.0	4.5e-17	tail protein	tail
eggNOG-mapper	UHGV-0033926_62	1414720.CBYM010000002_gene560	63.5	0.000000318	Phage minor structural protein	N/A
COG	UHGV-0033926_62	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0033926_63	phrog_372	141.0	8.59977e-42	tail protein	tail
structural_annotation	UHGV-0033926_63	PF05895,PF00386,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_64	phrog_24103	45.8	0.00000000000063	N/A	unknown function
PHROG	UHGV-0033926_65	phrog_17273	42.6	0.0000000000022	N/A	unknown function
Pfam	UHGV-0033926_65	PF03382	N/A	N/A	N/A	DUF285
NCBIFam	UHGV-0033926_65	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
Pfam	UHGV-0033926_66	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UniRef90	UHGV-0033926_67	UniRef90_R5TJG1	195.0	0	SH3 domain protein	N/A
eggNOG-mapper	UHGV-0033926_67	1232449.BAHV02000017_gene1510	55.8	0.00000387	N/A	N/A
PHROG	UHGV-0033926_72	phrog_3754	78.9	8.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0033926_72	1226322.HMPREF1545_00073	72.8	0.00000000000000621	N/A	N/A
eggNOG-mapper	UHGV-0033926_73	476272.RUMHYD_01772	58.5	0.0000000266	N/A	N/A
structural_annotation	UHGV-0033926_75	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_76	phrog_16490	110.3	2.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-0033926_76	397290.C810_01328	110.0	1.87e-26	N/A	N/A
PHROG	UHGV-0033926_77	phrog_59	131.3	3.9e-39	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033926_77	UniRef90_A0A841WKG5	114.0	9.87e-29	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0033926_77	1540090.A0A0A0RMM3_9CAUD	105.0	6.81e-26	sequence-specific DNA binding transcription factor activity	N/A
PADLOC	UHGV-0033926_77	HEase_00016	57.8	3.9e-16	homing endonuclease	RM
Pfam	UHGV-0033926_77	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0033926_77	PF01022	N/A	N/A	Bacterial regulatory protein, arsR family	HTH_5
eggNOG-mapper	UHGV-0033926_79	658655.HMPREF0988_00918	51.6	0.000000103	N/A	N/A
PHROG	UHGV-0033926_80	phrog_21718	40.3	0.000000000048	N/A	unknown function
eggNOG-mapper	UHGV-0033926_80	397290.C810_01326	55.8	0.000000137	N/A	N/A
structural_annotation	UHGV-0033926_82	PF05037,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_83	phrog_434	112.9	1.7e-33	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033926_83	UniRef90_A0A7C6W834	184.0	0	YqaJ-like viral recombinase	N/A
eggNOG-mapper	UHGV-0033926_83	1121866.AUGK01000003_gene1405	164.0	1.26117e-44	YqaJ viral recombinase family	N/A
Pfam	UHGV-0033926_83	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0033926_83	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0033926_83	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_84	phrog_1252	219.0	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033926_84	UniRef90_A0A6G7WZS2	207.0	0	DNA_pol_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0033926_84	1121866.AUGK01000003_gene1403	155.0	1.21e-36	DNA replication proofreading	N/A
COG	UHGV-0033926_84	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-0033926_84	PF04404,PF00476,NF004418,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_85	phrog_1252	145.5	3.29305e-43	DNA polymerase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0033926_85	935836.JAEL01000005_gene2713	121.0	2.4e-28	DNA polymerase elongation subunit (Family B)	N/A
COG	UHGV-0033926_85	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
KOfam	UHGV-0033926_88	K18959	186.7	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0033926_88	phrog_16	185.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033926_88	UniRef90_A0A3D2MTJ6	254.0	0	DNA or RNA helicase of superfamily II	N/A
eggNOG-mapper	UHGV-0033926_88	748224.HMPREF9436_01460	152.0	3.45e-38	Type III restriction protein res subunit	N/A
Pfam	UHGV-0033926_88	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0033926_88	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0033926_88	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0033926_88	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_90	phrog_335	61.5	1.4e-17	phosphatase	other
UniRef90	UHGV-0033926_90	UniRef90_UPI00067E78B7	77.8	0.00000000000000217	macro domain-containing protein	N/A
eggNOG-mapper	UHGV-0033926_90	315750.BPUM_1656	79.0	1.13e-16	Macro domain	N/A
PADLOC	UHGV-0033926_90	darG	40.5	0.00000000007	N/A	N/A
COG	UHGV-0033926_90	COG2110	N/A	N/A	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	N/A
structural_annotation	UHGV-0033926_90	PF20016,MF_01205,NF001666,COG2110	N/A	N/A	N/A	N/A
PHROG	UHGV-0033926_91	phrog_27197	62.8	6.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0033926_91	886882.PPSC2_p0363	85.5	3.75e-18	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0033926_91	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0033926_91	NF007410	N/A	N/A	N/A	N/A