UHGV-0034177 (vOTU-094046)

Viral Genome: UHGV-0034177

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0034177
vOTU ID	vOTU-094046
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_F_16_1210__NODE_7104_length_20135_cov_21.735816
Associated BioSample	SAMEA4765669
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.87 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.25
Jumbo phage	No

Genome content
Genome length (bp)	20,135
GC content	51.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	32
CDS density	91%
Average CDS length (bps)	571.41
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0034177_1	phrog_27197	126.7	4.8e-38	N/A	unknown function
COG	UHGV-0034177_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0034177_1	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0034177_3	phrog_14970	198.9	0	N/A	unknown function
UniRef90	UHGV-0034177_3	UniRef90_UPI00123F00F5	180.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0034177_3	428127.EUBDOL_01248	157.0	2.8026e-45	double-strand break repair protein	N/A
Pfam	UHGV-0034177_3	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0034177_3	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0034177_3	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0034177_4	phrog_72	55.7	5.6e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034177_4	UniRef90_A0A8D9PDS2	162.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0034177_4	445972.ANACOL_01825	144.0	2.03006e-41	N/A	N/A
structural_annotation	UHGV-0034177_4	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0034177_5	phrog_7566	52.0	0.0000000000000088	N/A	unknown function
eggNOG-mapper	UHGV-0034177_5	693746.OBV_24070	70.1	0.0000000000000483	N/A	N/A
KOfam	UHGV-0034177_6	K03111	134.2	1.3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0034177_6	phrog_44	140.1	1.19993e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034177_6	UniRef90_UPI001E2A5A6F	214.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0034177_6	445972.ANACOL_01827	126.0	1.52e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0034177_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0034177_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0034177_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0034177_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0034177_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0034177_7	phrog_16304	69.6	3.5e-20	N/A	unknown function
UniRef90	UHGV-0034177_7	UniRef90_UPI001E560709	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0034177_7	290402.Cbei_3733	58.5	0.000000165	DnaD domain protein	N/A
Pfam	UHGV-0034177_7	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0034177_7	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0034177_7	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0034177_8	K00558	72.4	3.6e-21	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0034177_8	phrog_116	83.7	1.5e-24	DNA methyltransferase	other
UniRef90	UHGV-0034177_8	UniRef90_A0A1Q6PX61	175.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0034177_8	445972.ANACOL_03604	142.0	7.74e-37	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0034177_8	oMTase_00004	106.0	4.3e-31	orphan methyltransferase	RM
Pfam	UHGV-0034177_8	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0034177_8	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0034177_9	K01160	68.9	1.1e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0034177_9	phrog_34	72.0	8.1e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034177_9	UniRef90_A0A498CNH4	148.0	4.90454e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0034177_9	1226322.HMPREF1545_04070	52.4	0.000000588	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0034177_9	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0034177_9	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034177_12	PF18895	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034177_15	UniRef90_A0A412AV49	73.6	6.47e-16	Restriction alleviation protein, Lar family	N/A
PHROG	UHGV-0034177_18	phrog_36	42.2	0.000000000011	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0034177_18	428125.CLOLEP_01806	83.6	2.37e-18	N/A	N/A
structural_annotation	UHGV-0034177_18	PF07374,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034177_20	UniRef90_A0A8D9UHF6	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0034177_20	1054213.HMPREF9946_03131	58.5	0.000000000954	N/A	N/A
Pfam	UHGV-0034177_20	PF18932	N/A	N/A	N/A	DUF5681
KOfam	UHGV-0034177_21	K06909	140.0	1.70006e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0034177_21	phrog_979	163.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0034177_21	UniRef90_A0A8D9UH35	909.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0034177_21	1232449.BAHV02000016_gene1824	481.0	0	N/A	N/A
Pfam	UHGV-0034177_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0034177_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0034177_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0034177_22	phrog_156	173.3	0	portal protein	head and packaging
UniRef90	UHGV-0034177_22	UniRef90_A0A8D9UHD1	1062.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0034177_22	1121091.AUMP01000003_gene2583	362.0	0	N/A	N/A
Pfam	UHGV-0034177_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0034177_22	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034177_23	UniRef90_A0A8D9UHD6	116.0	3.22e-33	Ogr/Delta-like zinc finger	N/A
structural_annotation	UHGV-0034177_23	PF20020	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034177_24	UniRef90_A0A8D9UHB9	410.0	0	Non-structural protein 5	N/A
PHROG	UHGV-0034177_25	phrog_1357	248.0	0	major head protein	head and packaging
UniRef90	UHGV-0034177_25	UniRef90_A0A8D9UHB3	577.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0034177_25	696281.Desru_1092	286.0	0	N/A	N/A
NCBIFam	UHGV-0034177_25	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0034177_25	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0034177_26	phrog_15239	41.3	0.000000000011	N/A	unknown function
PHROG	UHGV-0034177_28	phrog_3287	137.1	7.89996e-41	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0034177_28	665956.HMPREF1032_03917	475.0	0	N/A	N/A
structural_annotation	UHGV-0034177_28	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034177_29	762211.BSTEL_0612	79.3	0.0000000000000585	N/A	N/A