UHGV-0034317 (vOTU-059581)

Viral Genome: UHGV-0034317

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0034317
vOTU ID	vOTU-059581
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_I_2_2614__NODE_254_length_42300_cov_160.035668
Associated BioSample	SAMEA4766361
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.28 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9774
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.38
Jumbo phage	No

Genome content
Genome length (bp)	42,300
GC content	60.69%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	94%
Average CDS length (bps)	943.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0034317_2	K01160	64.2	3.5e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0034317_2	phrog_140	95.1	7e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034317_2	UniRef90_A0A6G3M4Z7	235.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0034317_2	742738.HMPREF9460_01358	398.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0034317_2	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0034317_2	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
KOfam	UHGV-0034317_3	K07505	385.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0034317_3	phrog_2597	1115.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034317_3	UniRef90_A0A1C7FLS2	1489.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0034317_3	742738.HMPREF9460_01357	1345.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0034317_3	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0034317_3	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0034317_3	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0034317_3	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0034317_4	K17677	347.1	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0034317_4	phrog_16	279.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034317_4	UniRef90_A0A1C7FKB8	1047.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0034317_4	742738.HMPREF9460_01356	1039.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0034317_4	mREase_IV_00005	145.5	4.1058e-43	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0034317_4	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0034317_4	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0034317_4	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0034317_4	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_5	phrog_2698	183.2	0	N/A	unknown function
UniRef90	UHGV-0034317_5	UniRef90_A0A658JVW5	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0034317_5	742738.HMPREF9460_01355	358.0	0	N/A	N/A
structural_annotation	UHGV-0034317_5	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_6	phrog_124	229.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034317_6	UniRef90_UPI0011068BCC	400.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0034317_6	742738.HMPREF9460_01354	647.0	0	AAA domain	N/A
Pfam	UHGV-0034317_6	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0034317_6	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0034317_7	K03546	65.6	5.6e-19	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0034317_7	phrog_1499	462.2	0	N/A	unknown function
UniRef90	UHGV-0034317_7	UniRef90_A0A096BAS9	805.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0034317_7	742738.HMPREF9460_01353	805.0	0	AAA domain	N/A
Pfam	UHGV-0034317_7	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0034317_7	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0034317_7	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034317_10	NF007621,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_12	phrog_7338	48.7	0.00000000000013	N/A	unknown function
UniRef90	UHGV-0034317_12	UniRef90_A0A1C7FM84	111.0	3.33e-31	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-0034317_12	742738.HMPREF9460_02489	115.0	1.17e-33	Helix-turn-helix domain	N/A
Pfam	UHGV-0034317_12	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0034317_12	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0034317_12	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_13	phrog_1726	209.0	0	anti-repressor	transcription regulation
UniRef90	UHGV-0034317_13	UniRef90_H1C928	493.0	0	Rha family phage regulatory protein	N/A
eggNOG-mapper	UHGV-0034317_13	742738.HMPREF9460_02487	499.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0034317_13	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
COG	UHGV-0034317_13	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0034317_13	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034317_14	UniRef90_U2BKK8	140.0	1.90997e-42	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0034317_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0034317_14	PF13560,NF040507,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034317_15	UniRef90_UPI0018976583	240.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0034317_15	1507.HMPREF0262_00424	70.9	0.0000000000000323	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0034317_15	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0034317_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0034317_16	phrog_87	71.5	8.2e-21	metallo-protease	other
UniRef90	UHGV-0034317_16	UniRef90_UPI001899699D	175.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0034317_16	1007096.BAGW01000011_gene2354	160.0	0	IrrE N-terminal-like domain	N/A
COG	UHGV-0034317_16	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0034317_16	PF06114,COG2856	N/A	N/A	N/A	N/A
COG	UHGV-0034317_17	COG2374	N/A	N/A	Predicted extracellular nuclease	N/A
structural_annotation	UHGV-0034317_17	PF10754	N/A	N/A	N/A	N/A
KOfam	UHGV-0034317_18	K14059	324.0	0	int; integrase	N/A
PHROG	UHGV-0034317_18	phrog_1	228.5	0	integrase	integration and excision
UniRef90	UHGV-0034317_18	UniRef90_G9YWB3	747.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0034317_18	742738.HMPREF9460_02482	747.0	0	Phage integrase family	N/A
Pfam	UHGV-0034317_18	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0034317_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0034317_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0034317_18	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_19	phrog_22978	1045.8	0	N/A	unknown function
UniRef90	UHGV-0034317_19	UniRef90_A0A396KH15	560.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0034317_19	1410650.JHWL01000003_gene2814	342.0	0	N/A	N/A
Pfam	UHGV-0034317_19	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
eggNOG-mapper	UHGV-0034317_20	1226322.HMPREF1545_00786	153.0	1.27e-38	N/A	N/A
PHROG	UHGV-0034317_21	phrog_511	210.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0034317_21	1226322.HMPREF1545_00785	470.0	0	N/A	N/A
structural_annotation	UHGV-0034317_21	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-0034317_23	K07486	239.9	0	K07486; transposase	N/A
PHROG	UHGV-0034317_23	phrog_2199	253.7	0	transposase	integration and excision
UniRef90	UHGV-0034317_23	UniRef90_A0A174D8V7	855.0	0	IS110 family transposase	N/A
eggNOG-mapper	UHGV-0034317_23	1297617.JPJD01000073_gene1625	855.0	0	Transposase IS116/IS110/IS902 family	N/A
Pfam	UHGV-0034317_23	PF01548	N/A	N/A	Transposase	DEDD_Tnp_IS110
Pfam	UHGV-0034317_23	PF02371	N/A	N/A	Transposase IS116/IS110/IS902 family	Transposase_20
NCBIFam	UHGV-0034317_23	NF033542.1	N/A	N/A	IS110 family transposase	N/A
COG	UHGV-0034317_23	COG3547	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0034317_23	PF01548,PF02371,MF_00651,NF033542,COG3547	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_24	phrog_37329	43.4	0.0000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0034317_24	1227349.C170_22575	73.6	0.000000000000521	Fibronectin type 3 domain	N/A
COG	UHGV-0034317_24	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0034317_24	PF17166,NF038367,COG2033	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034317_25	UniRef90_UPI001D009058	491.0	0	gp58-like family protein	N/A
eggNOG-mapper	UHGV-0034317_25	1226322.HMPREF1545_00783	95.9	1.97e-19	Chaperone of endosialidase	N/A
PHROG	UHGV-0034317_26	phrog_4105	84.3	1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0034317_26	537013.CLOSTMETH_01753	81.3	1.59e-18	N/A	N/A
PHROG	UHGV-0034317_27	phrog_1129	78.6	4.6e-23	holin	lysis
UniRef90	UHGV-0034317_27	UniRef90_A0A1C7FPV3	164.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0034317_27	1226322.HMPREF1545_00069	141.0	6.2638e-43	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0034317_27	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0034317_27	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_28	phrog_355	51.6	0.000000000000014	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034317_28	UniRef90_A0A8J6M6I8	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0034317_28	397290.C810_05229	126.0	1.59e-36	N/A	N/A
Pfam	UHGV-0034317_28	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0034317_28	PF14359	N/A	N/A	N/A	N/A
KOfam	UHGV-0034317_29	K01448	176.9	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0034317_29	phrog_18955	392.4	0	N/A	unknown function
UniRef90	UHGV-0034317_29	UniRef90_A0A1C7FQI4	824.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0034317_29	1226322.HMPREF1545_00782	248.0	0	N/A	N/A
Pfam	UHGV-0034317_29	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0034317_29	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0034317_29	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0034317_29	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_30	phrog_2310	64.2	1e-18	N/A	unknown function
PHROG	UHGV-0034317_31	phrog_24451	57.7	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0034317_31	1408437.JNJN01000040_gene189	74.7	0.00000000000000179	N/A	N/A
PHROG	UHGV-0034317_32	phrog_12105	85.7	3.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0034317_32	1226322.HMPREF1545_03850	67.0	0.000000000235	N/A	N/A
PHROG	UHGV-0034317_34	phrog_1357	250.6	0	major head protein	head and packaging
UniRef90	UHGV-0034317_34	UniRef90_UPI001D02EBA7	792.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0034317_34	1449126.JQKL01000003_gene1695	363.0	0	N/A	N/A
NCBIFam	UHGV-0034317_34	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0034317_34	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_35	phrog_13908	366.0	0	N/A	unknown function
UniRef90	UHGV-0034317_35	UniRef90_UPI0012DFC3C8	118.0	3.56e-26	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0034317_35	1203606.HMPREF1526_02747	71.2	0.0000000000143	N/A	N/A
UniRef90	UHGV-0034317_36	UniRef90_UPI001D021C93	195.0	0	ribosomal-processing cysteine protease Prp	N/A
structural_annotation	UHGV-0034317_36	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_37	phrog_156	343.8	0	portal protein	head and packaging
UniRef90	UHGV-0034317_37	UniRef90_A0A8D9UH10	822.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0034317_37	748224.HMPREF9436_01396	551.0	0	N/A	N/A
structural_annotation	UHGV-0034317_37	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0034317_38	K06909	105.9	4.5e-31	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0034317_38	phrog_979	202.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0034317_38	UniRef90_UPI001D0245C4	1012.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0034317_38	411483.FAEPRAA2165_01044	676.0	0	Terminase-like family	N/A
Pfam	UHGV-0034317_38	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0034317_38	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0034317_38	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0034317_39	phrog_309	175.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0034317_39	UniRef90_UPI001D01EB7C	273.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0034317_39	1408437.JNJN01000045_gene597	186.0	0	HNH endonuclease	N/A
Pfam	UHGV-0034317_39	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0034317_39	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0034317_39	PF07141	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034317_41	742738.HMPREF9460_02503	103.0	8.98e-28	N/A	N/A
structural_annotation	UHGV-0034317_41	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A