UHGV-0034340 (vOTU-011906)

Viral Genome: UHGV-0034340

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0034340
vOTU ID	vOTU-011906
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_12_1545__NODE_1320_length_44957_cov_16.948284
Associated BioSample	SAMEA4765835
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.51
Jumbo phage	No

Genome content
Genome length (bp)	44,957
GC content	40.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	91%
Average CDS length (bps)	613.93
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0034340_1	K01447	107.0	2.2e-31	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0034340_1	phrog_1493	122.1	3.8e-37	endolysin	lysis
UniRef90	UHGV-0034340_1	UniRef90_UPI001D091812	289.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0034340_1	1235802.C823_05611	188.0	0	Ami_2	N/A
Pfam	UHGV-0034340_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0034340_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0034340_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0034340_1	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_2	phrog_33625	60.5	2.1e-17	holin	lysis
UniRef90	UHGV-0034340_2	UniRef90_A0A6N3AF02	146.0	5.88545e-44	Bacteriophage holin	N/A
eggNOG-mapper	UHGV-0034340_2	665959.HMPREF1013_00186	116.0	6.88e-33	Bacteriophage holin	N/A
Pfam	UHGV-0034340_2	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0034340_2	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0034340_2	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034340_2	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034340_3	1211844.CBLM010000023_gene975	56.6	0.000000005	N/A	N/A
NCBIFam	UHGV-0034340_4	NF040910.1	N/A	N/A	CD1375 family protein	N/A
PHROG	UHGV-0034340_5	phrog_18126	107.1	5.6e-32	N/A	unknown function
KOfam	UHGV-0034340_6	K00986	138.1	8.10007e-41	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0034340_6	phrog_1423	327.3	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034340_6	UniRef90_UPI00189C54DF	602.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0034340_6	742740.HMPREF9474_02336	446.0	0	COG COG3344 Retron-type reverse transcriptase	N/A
PADLOC	UHGV-0034340_6	icity0040	117.1	2.1e-34	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0034340_6	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0034340_6	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0034340_6	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_7	phrog_5302	314.4	0	tail protein	tail
UniRef90	UHGV-0034340_7	UniRef90_A0A564WU27	510.0	0	Chromosome partition protein Smc	N/A
eggNOG-mapper	UHGV-0034340_7	742740.HMPREF9474_02337	336.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0034340_7	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0034340_9	phrog_25620	43.8	0.0000000000022	tail collar fiber protein	tail
PHROG	UHGV-0034340_10	phrog_18725	73.4	3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0034340_10	585501.HMPREF6123_0822	67.8	0.0000000000017	N/A	N/A
PHROG	UHGV-0034340_11	phrog_13879	342.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0034340_11	742740.HMPREF9474_03516	320.0	0	N/A	N/A
structural_annotation	UHGV-0034340_11	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_12	phrog_1194	99.3	2.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0034340_12	585501.HMPREF6123_0824	113.0	1.11e-30	N/A	N/A
Pfam	UHGV-0034340_12	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0034340_12	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_13	phrog_1535	142.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0034340_13	UniRef90_A0A1C6L0H4	666.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0034340_13	1121866.AUGK01000003_gene1437	349.0	0	phage tail tape measure protein	N/A
COG	UHGV-0034340_13	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-0034340_14	1121333.JMLH01000047_gene1011	87.4	3.58e-20	N/A	N/A
UniRef90	UHGV-0034340_15	UniRef90_A0A1C0ADY7	146.0	2.05991e-43	N/A	N/A
eggNOG-mapper	UHGV-0034340_15	469596.HMPREF9488_01311	92.4	6.52e-23	N/A	N/A
Pfam	UHGV-0034340_15	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0034340_15	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_16	phrog_158	70.1	4e-20	major tail protein	tail
UniRef90	UHGV-0034340_16	UniRef90_D7GNW1	221.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0034340_16	1158607.UAU_01767	75.1	0.00000000000000354	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0034340_16	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0034340_16	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034340_17	1121333.JMLH01000047_gene1014	58.5	0.00000000562	N/A	N/A
structural_annotation	UHGV-0034340_17	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034340_18	476272.RUMHYD_01963	62.8	0.000000000737	N/A	N/A
eggNOG-mapper	UHGV-0034340_19	1232453.BAIF02000058_gene1630	71.2	0.0000000000000639	N/A	N/A
UniRef90	UHGV-0034340_20	UniRef90_D7GNV9	164.0	0	Phage QLRG family, putative DNA packaging	N/A
eggNOG-mapper	UHGV-0034340_20	1298920.KI911353_gene2658	60.8	0.000000000131	N/A	N/A
Pfam	UHGV-0034340_20	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0034340_20	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_21	phrog_544	91.7	6.8e-27	major head protein	head and packaging
UniRef90	UHGV-0034340_21	UniRef90_A0A6N3FT63	150.0	1.84e-40	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0034340_21	428127.EUBDOL_01555	257.0	0	N/A	N/A
structural_annotation	UHGV-0034340_21	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_23	phrog_64	236.9	0	portal protein	head and packaging
UniRef90	UHGV-0034340_23	UniRef90_A0A1C5MXM2	723.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0034340_23	1121866.AUGK01000003_gene1429	419.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0034340_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0034340_23	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_24	phrog_38	191.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0034340_24	UniRef90_A0A810QA10	664.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0034340_24	1298920.KI911353_gene2682	461.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0034340_24	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0034340_24	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034340_24	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0034340_25	K06400	194.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0034340_25	phrog_95	179.8	0	integrase	integration and excision
UniRef90	UHGV-0034340_25	UniRef90_A0A1C5MXG4	421.0	0	Transposon Tn3 resolvase	N/A
eggNOG-mapper	UHGV-0034340_25	697329.Rumal_3466	310.0	0	resolvase	N/A
Pfam	UHGV-0034340_25	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0034340_25	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0034340_25	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0034340_25	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034340_26	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_27	phrog_434	40.8	0.000000000031	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0034340_27	1121091.AUMP01000032_gene3074	50.8	0.00000381	Phage-related protein	N/A
COG	UHGV-0034340_27	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
UniRef90	UHGV-0034340_31	UniRef90_UPI001D08D6B6	109.0	3.22e-26	DNA-packaging protein	N/A
PHROG	UHGV-0034340_40	phrog_22740	74.8	9.2e-22	N/A	unknown function
UniRef90	UHGV-0034340_40	UniRef90_A0A174XE96	103.0	3.88e-26	DNA N-6-adenine-methyltransferase of bacteriophage	N/A
eggNOG-mapper	UHGV-0034340_40	1235793.C809_02648	95.5	2.02e-24	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0034340_40	oMTase_00015	78.3	2e-22	orphan methyltransferase	RM
Pfam	UHGV-0034340_40	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
KOfam	UHGV-0034340_41	K00558	53.3	0.0000000000000027	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0034340_41	phrog_16427	125.4	3.6e-37	DNA methyltransferase	other
UniRef90	UHGV-0034340_41	UniRef90_A0A373VYY6	146.0	1.15005e-41	DNA (cytosine-5-)-methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0034340_41	482234.SCAZ3_10455	150.0	5.08994e-41	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0034340_41	oMTase_00023	70.4	2e-22	orphan methyltransferase	RM
Pfam	UHGV-0034340_41	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0034340_41	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0034340_43	K00558	161.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0034340_43	phrog_116	165.6	0	DNA methyltransferase	other
UniRef90	UHGV-0034340_43	UniRef90_G9WTJ8	320.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0034340_43	1408415.JHXL01000003_gene1146	235.0	0	COG0270 Site-specific DNA methylase	N/A
PADLOC	UHGV-0034340_43	MTase_II_00058	179.7	0	Type II methyltransferase	RM
Pfam	UHGV-0034340_43	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0034340_43	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0034340_43	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0034340_44	phrog_1156	319.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034340_44	UniRef90_D7GNU9	882.0	0	Phage/plasmid primase, P4 family, C-terminal domain	N/A
eggNOG-mapper	UHGV-0034340_44	431943.CKL_3236	302.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0034340_44	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0034340_44	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0034340_44	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0034340_44	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0034340_44	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0034340_44	PF08706,PF05272,PF02257,MF_04000,NF005477,COG3378	N/A	N/A	N/A	N/A
KOfam	UHGV-0034340_45	K07171	87.0	3.1e-25	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0034340_45	phrog_1936	131.0	6.7e-39	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0034340_45	UniRef90_A0A1C5MWG4	127.0	3.74e-34	mRNA interferase MazF4	N/A
eggNOG-mapper	UHGV-0034340_45	411461.DORFOR_01157	101.0	2.62e-24	N/A	N/A
Pfam	UHGV-0034340_45	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0034340_45	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0034340_45	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_48	phrog_3878	46.4	0.00000000000068	N/A	unknown function
PHROG	UHGV-0034340_50	phrog_22292	68.4	8.9e-20	N/A	unknown function
KOfam	UHGV-0034340_51	K06941	164.0	0	rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]	N/A
PHROG	UHGV-0034340_51	phrog_24834	61.2	1e-17	N/A	unknown function
UniRef90	UHGV-0034340_51	UniRef90_UPI001C0E48F5	405.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-0034340_51	1122173.AXVL01000039_gene2445	347.0	0	rRNA (adenine-C2-)-methyltransferase activity	N/A
Pfam	UHGV-0034340_51	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0034340_51	COG0820	N/A	N/A	Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37	N/A
structural_annotation	UHGV-0034340_51	PF04055,MF_01849,TIGR00048,COG0820	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_53	phrog_7024	48.1	0.000000000000044	N/A	unknown function
PHROG	UHGV-0034340_54	phrog_1829	147.0	9.3887e-44	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034340_54	UniRef90_A0A1C0AE21	379.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0034340_54	1121866.AUGK01000003_gene1409	205.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-0034340_54	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-0034340_54	COG4983	N/A	N/A	Primase-polymerase (Primpol) domain protein	N/A
structural_annotation	UHGV-0034340_54	PF08708,PF09250,COG4983	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034340_55	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_58	phrog_236	95.4	1.1e-27	nucleotide kinase	other
UniRef90	UHGV-0034340_58	UniRef90_A0A8D9PGN7	126.0	4.77e-36	Nucelotide kinase	N/A
eggNOG-mapper	UHGV-0034340_58	1123263.AUKY01000015_gene1590	85.9	2.9e-21	N/A	N/A
Pfam	UHGV-0034340_58	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0034340_58	PF11753	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034340_59	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_60	phrog_434	108.9	4.5e-32	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034340_60	UniRef90_D7GXC5	520.0	0	Phage-related protein, predicted endonuclease	N/A
eggNOG-mapper	UHGV-0034340_60	1219626.HMPREF1639_07320	348.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0034340_60	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0034340_60	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0034340_60	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_61	phrog_2245	60.1	4e-17	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0034340_61	UniRef90_E2NR83	83.6	1.64e-18	MazG domain-containing protein	N/A
structural_annotation	UHGV-0034340_61	PF12643,MF_00374,TIGR03188,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0034340_62	phrog_1252	483.4	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034340_62	UniRef90_D7GXC4	1263.0	0	DNA polymerase elongation subunit (Family B)	N/A
eggNOG-mapper	UHGV-0034340_62	1121866.AUGK01000003_gene1403	693.0	0	DNA replication proofreading	N/A
Pfam	UHGV-0034340_62	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0034340_62	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-0034340_62	PF04404,PF08490,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
KOfam	UHGV-0034340_63	K18959	193.9	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0034340_63	phrog_16	181.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034340_63	UniRef90_D7GXC3	697.0	0	DNA or RNA helicases of superfamily II	N/A
eggNOG-mapper	UHGV-0034340_63	1449050.JNLE01000003_gene3908	507.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-0034340_63	mREase_IV_00005	50.1	0.000000000000022	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0034340_63	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0034340_63	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0034340_63	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0034340_63	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034340_64	UniRef90_D7GXC2	181.0	0	Archaeal holliday junction resolvase (Hjc)	N/A
eggNOG-mapper	UHGV-0034340_64	1449050.JNLE01000003_gene3909	106.0	1.55e-27	Recombination protein U	N/A
Pfam	UHGV-0034340_64	PF01870	N/A	N/A	Archaeal holliday junction resolvase (hjc)	Hjc
structural_annotation	UHGV-0034340_64	PF03838,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034340_66	UniRef90_A0A417IKZ6	66.6	0.000000000000773	DNA-binding protein	N/A
structural_annotation	UHGV-0034340_66	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A