UHGV-0034525 (vOTU-029196)

Viral Genome: UHGV-0034525

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0034525
vOTU ID	vOTU-029196
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_20_1180__NODE_2530_length_42154_cov_7.752216
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	67.99 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.03
Jumbo phage	No

Genome content
Genome length (bp)	42,154
GC content	43.98%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	92%
Average CDS length (bps)	667.35
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
AcrCatalog	UHGV-0034525_1	cluster_11486	100.0	9.41e-30	NA	N/A
structural_annotation	UHGV-0034525_2	MF_01302_B	N/A	N/A	N/A	N/A
KOfam	UHGV-0034525_3	K01448	40.2	0.00000000002	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0034525_3	phrog_1794	74.4	2.1e-21	amidase	lysis
UniRef90	UHGV-0034525_3	UniRef90_A0A416MN83	409.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0034525_3	908340.HMPREF9406_2562	115.0	1.3e-26	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0034525_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0034525_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0034525_3	PF01520,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_4	phrog_199	70.4	2e-20	holin	lysis
UniRef90	UHGV-0034525_4	UniRef90_A0A416MND6	277.0	0	Holin	N/A
eggNOG-mapper	UHGV-0034525_4	411462.DORLON_00766	186.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0034525_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0034525_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0034525_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0034525_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_6	phrog_1382	57.7	9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0034525_6	411468.CLOSCI_00272	60.1	0.000000000015	N/A	N/A
eggNOG-mapper	UHGV-0034525_7	457412.RSAG_04672	98.6	3.22e-25	N/A	N/A
KOfam	UHGV-0034525_8	K00986	62.8	4.6e-18	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0034525_8	phrog_1423	159.1	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034525_8	UniRef90_A0A416MMY0	814.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0034525_8	457412.RSAG_01111	511.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
Pfam	UHGV-0034525_8	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0034525_8	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0034525_8	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_9	phrog_17147	568.9	0	N/A	unknown function
UniRef90	UHGV-0034525_9	UniRef90_A0A0M4N1P7	171.0	2.51953e-42	Unassigned protein	N/A
eggNOG-mapper	UHGV-0034525_9	457412.RSAG_01112	615.0	0	N/A	N/A
structural_annotation	UHGV-0034525_9	PF10651,PF21430	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_10	phrog_372	256.6	0	tail protein	tail
UniRef90	UHGV-0034525_10	UniRef90_F0YWS0	196.0	0	Phage structural protein	N/A
eggNOG-mapper	UHGV-0034525_10	556261.HMPREF0240_01282	196.0	0	N/A	N/A
Pfam	UHGV-0034525_10	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0034525_10	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0034525_10	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_11	phrog_3558	338.3	0	tail protein	tail
UniRef90	UHGV-0034525_11	UniRef90_A0A3A9S9B6	264.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0034525_11	411465.PEPMIC_00746	238.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0034525_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0034525_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0034525_11	COG4926	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-0034525_12	UniRef90_UPI000E5CE8E9	112.0	2.01e-27	phage tail family protein	N/A
eggNOG-mapper	UHGV-0034525_12	411468.CLOSCI_00193	72.4	0.00000000000082	N/A	N/A
structural_annotation	UHGV-0034525_12	PF05709,PF11699,TIGR01633,NF009806,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0034525_13	K20283	65.6	1.2e-19	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0034525_13	phrog_1533	362.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0034525_13	UniRef90_UPI001C01D4D2	305.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0034525_13	411483.FAEPRAA2165_01911	289.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0034525_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0034525_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0034525_13	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0034525_13	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_15	phrog_88	112.2	4e-33	major tail protein	tail
UniRef90	UHGV-0034525_15	UniRef90_A0A4Q7PJM9	174.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-0034525_15	349161.Dred_2600	129.0	2.18e-34	N/A	N/A
NCBIFam	UHGV-0034525_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0034525_15	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
COG	UHGV-0034525_16	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034525_16	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_17	phrog_5	48.6	0.00000000000014	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0034525_17	411459.RUMOBE_00932	100.0	4.35e-25	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0034525_17	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0034525_17	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_18	phrog_25	53.1	0.0000000000000057	head closure Hc1	connector
Pfam	UHGV-0034525_18	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0034525_18	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0034525_18	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0034525_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034525_19	UniRef90_UPI001C0ED6F9	66.6	0.0000000000023	head-tail connector protein	N/A
NCBIFam	UHGV-0034525_19	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0034525_19	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_20	phrog_10	161.8	0	major head protein	head and packaging
UniRef90	UHGV-0034525_20	UniRef90_A0A3E2NFV4	265.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0034525_20	411459.RUMOBE_00935	254.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0034525_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0034525_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0034525_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0034525_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0034525_21	K01358	140.3	1.6e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0034525_21	phrog_94	183.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0034525_21	UniRef90_R9JV23	186.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0034525_21	97139.C824_05971	187.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0034525_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0034525_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0034525_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_22	phrog_12	275.4	0	portal protein	head and packaging
UniRef90	UHGV-0034525_22	UniRef90_F7JWF4	463.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-0034525_22	1391647.AVSV01000039_gene1098	439.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0034525_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0034525_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0034525_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0034525_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_23	phrog_9	339.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0034525_23	UniRef90_D4MVN5	791.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0034525_23	97139.C824_05973	758.0	0	Terminase	N/A
Pfam	UHGV-0034525_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0034525_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0034525_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0034525_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_24	phrog_83	94.2	1.4e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0034525_24	UniRef90_A0A1E3U7L7	150.0	1.34525e-43	Terminase	N/A
eggNOG-mapper	UHGV-0034525_24	1235792.C808_03067	124.0	5.03e-34	Phage terminase, small subunit	N/A
Pfam	UHGV-0034525_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0034525_24	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0034525_24	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0034525_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_25	phrog_144	84.5	1.2e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034525_25	UniRef90_A0A6L9H2F6	115.0	1.9e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0034525_25	1235792.C808_03068	115.0	6.39e-31	HNH endonuclease	N/A
COG	UHGV-0034525_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0034525_25	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_26	phrog_36	46.3	0.000000000000055	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0034525_27	742733.HMPREF9469_00921	62.0	0.0000000000932	N/A	N/A
UniRef90	UHGV-0034525_30	UniRef90_A0A416MN06	76.3	7.28e-16	Zinc ribbon domain-containing protein	N/A
Pfam	UHGV-0034525_30	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
PHROG	UHGV-0034525_31	phrog_3915	70.3	1.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0034525_31	86416.Clopa_2563	61.6	0.0000000000469	N/A	N/A
PHROG	UHGV-0034525_32	phrog_10714	48.8	0.0000000000001	N/A	unknown function
UniRef90	UHGV-0034525_32	UniRef90_R5GX78	69.3	0.000000000000364	DNA polymerase II large subunit	N/A
KOfam	UHGV-0034525_34	K03469	47.7	0.00000000000029	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0034525_34	phrog_531	43.0	0.0000000000073	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034525_34	UniRef90_UPI001C656ED8	65.9	0.0000000000289	ribonuclease HI	N/A
eggNOG-mapper	UHGV-0034525_34	264203.ZMO1601	65.9	0.00000000000663	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0034525_34	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0034525_34	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0034525_34	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_35	phrog_7566	94.1	8.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0034525_35	1007096.BAGW01000031_gene114	81.6	9.03e-19	N/A	N/A
PHROG	UHGV-0034525_37	phrog_1315	47.5	0.00000000000023	N/A	unknown function
PHROG	UHGV-0034525_38	phrog_23707	69.3	5.4e-20	N/A	unknown function
UniRef90	UHGV-0034525_38	UniRef90_A0A1Q6KU34	125.0	6.67e-34	N/A	N/A
eggNOG-mapper	UHGV-0034525_38	411470.RUMGNA_00214	123.0	6.36e-34	N/A	N/A
structural_annotation	UHGV-0034525_38	PF08325,COG4900	N/A	N/A	N/A	N/A
KOfam	UHGV-0034525_39	K03111	132.7	4.2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0034525_39	phrog_44	143.2	1.3999e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034525_39	UniRef90_A0A176U568	187.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0034525_39	742740.HMPREF9474_02547	185.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0034525_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0034525_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0034525_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0034525_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0034525_39	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_40	phrog_15077	113.4	3.6e-33	N/A	unknown function
UniRef90	UHGV-0034525_40	UniRef90_UPI001D0741A0	158.0	8.69001e-41	N/A	N/A
eggNOG-mapper	UHGV-0034525_40	97139.C824_05986	212.0	0	N/A	N/A
structural_annotation	UHGV-0034525_40	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_41	phrog_8470	256.6	0	N/A	unknown function
UniRef90	UHGV-0034525_41	UniRef90_UPI0010204BDF	390.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0034525_41	97139.C824_00039	402.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0034525_41	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0034525_41	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034525_42	999413.HMPREF1094_04704	188.0	0	N/A	N/A
PHROG	UHGV-0034525_46	phrog_3584	205.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034525_46	UniRef90_A0A4P8IFK4	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0034525_46	411470.RUMGNA_00203	206.0	0	COG NOG14934 non supervised orthologous group	N/A
KOfam	UHGV-0034525_50	K18830	42.6	0.000000000012	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0034525_50	phrog_8	41.1	0.0000000000056	transcriptional regulator	transcription regulation
UniRef90	UHGV-0034525_50	UniRef90_A0A3D3U8U0	139.0	5.11999e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0034525_50	1235792.C808_00647	69.7	0.0000000000005	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0034525_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0034525_50	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0034525_51	K23779	41.0	0.000000000035	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0034525_51	UniRef90_U2C4I4	61.6	0.0000000000652	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0034525_51	1280698.AUJS01000007_gene1001	52.0	0.0000000696	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0034525_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
UniRef90	UHGV-0034525_52	UniRef90_A0A417WXI5	63.9	0.00000000000401	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0034525_52	411470.RUMGNA_02178	54.7	0.0000000031	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0034525_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0034525_52	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_53	phrog_28892	89.0	4.1e-26	N/A	unknown function
UniRef90	UHGV-0034525_53	UniRef90_B1V2Q3	117.0	4.74e-29	Putative lipoprotein	N/A
eggNOG-mapper	UHGV-0034525_53	290402.Cbei_1651	117.0	1.55e-28	N/A	N/A
KOfam	UHGV-0034525_54	K06400	282.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0034525_54	phrog_95	310.8	0	integrase	integration and excision
UniRef90	UHGV-0034525_54	UniRef90_A0A417ANQ9	518.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0034525_54	673832.D2IYS3_9CAUD	384.0	0	Recombinase	N/A
Pfam	UHGV-0034525_54	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0034525_54	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0034525_54	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
structural_annotation	UHGV-0034525_54	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0034525_57	phrog_13890	66.3	3e-19	N/A	unknown function
UniRef90	UHGV-0034525_57	UniRef90_A0A7X5I8W7	74.3	4.26e-16	Arc family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0034525_57	411468.CLOSCI_01452	53.5	0.0000000322	N/A	N/A
structural_annotation	UHGV-0034525_57	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A