UHGV-0034798 (vOTU-061932)

Viral Genome: UHGV-0034798

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0034798
vOTU ID	vOTU-061932
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_12_1556__NODE_2287_length_41052_cov_31.420378
Associated BioSample	SAMEA4765846
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.35
Jumbo phage	No

Genome content
Genome length (bp)	41,052
GC content	52.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	88%
Average CDS length (bps)	533.87
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0034798_2	phrog_3136	118.4	1.9e-35	N/A	unknown function
UniRef90	UHGV-0034798_2	UniRef90_A0A3D0HBD2	113.0	8.46e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0034798_2	642492.Clole_1416	52.4	0.00000164	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0034798_2	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0034798_2	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0034798_2	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_3	phrog_38832	81.3	8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0034798_3	1232443.BAIA02000078_gene48	124.0	5.66e-35	N/A	N/A
structural_annotation	UHGV-0034798_3	PF18300,MF_01549,TIGR02450	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034798_4	1232449.BAHV02000018_gene1537	121.0	1.63e-33	N/A	N/A
PHROG	UHGV-0034798_5	phrog_9298	56.7	2.6e-16	radical SAM domain protein	other
UniRef90	UHGV-0034798_5	UniRef90_A0A1C5YXG3	313.0	0	Radical SAM superfamily	N/A
eggNOG-mapper	UHGV-0034798_5	742738.HMPREF9460_03770	298.0	0	radical SAM domain protein	N/A
COG	UHGV-0034798_5	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0034798_5	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_6	phrog_38832	68.8	4.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0034798_6	665956.HMPREF1032_00143	65.5	0.0000000000969	N/A	N/A
PHROG	UHGV-0034798_10	phrog_3584	111.3	7.6e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0034798_10	537013.CLOSTMETH_02141	77.0	0.0000000000000182	N/A	N/A
structural_annotation	UHGV-0034798_10	PF21578,MF_00360	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034798_11	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0034798_14	K06909	130.4	1.8e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0034798_14	phrog_10250	184.9	0	N/A	unknown function
UniRef90	UHGV-0034798_14	UniRef90_A0A3D3Y0N9	619.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0034798_14	1226322.HMPREF1545_00043	573.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0034798_14	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0034798_14	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0034798_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0034798_14	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_15	phrog_64	164.0	0	portal protein	head and packaging
UniRef90	UHGV-0034798_15	UniRef90_UPI0018A8A301	607.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0034798_15	673376.F2VHW1_9CAUD	205.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0034798_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0034798_15	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_16	phrog_595	117.8	1.3e-34	head maturation protease	head and packaging
UniRef90	UHGV-0034798_16	UniRef90_A0A810PSD3	422.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0034798_16	1504822.CCNO01000013_gene286	191.0	0	cell adhesion	N/A
Pfam	UHGV-0034798_16	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0034798_16	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0034798_16	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034798_16	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_17	phrog_5	79.5	4.8e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0034798_17	UniRef90_A0A3A9EIF3	172.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0034798_17	1280685.AUKC01000004_gene1630	103.0	1.94e-26	N/A	N/A
Pfam	UHGV-0034798_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0034798_17	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0034798_17	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_18	phrog_29211	55.8	7e-16	N/A	unknown function
structural_annotation	UHGV-0034798_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_20	phrog_544	118.8	4.7e-35	major head protein	head and packaging
UniRef90	UHGV-0034798_20	UniRef90_A0A1C6B5R0	323.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0034798_20	476272.RUMHYD_01776	303.0	0	N/A	N/A
structural_annotation	UHGV-0034798_20	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_22	phrog_17977	85.3	4.6e-25	N/A	unknown function
UniRef90	UHGV-0034798_22	UniRef90_UPI00141211AB	111.0	1.64e-29	head-tail adaptor protein	N/A
structural_annotation	UHGV-0034798_22	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_23	phrog_17405	48.5	0.00000000000014	head protein	head and packaging
UniRef90	UHGV-0034798_23	UniRef90_A0A415JI88	114.0	3.08e-30	N/A	N/A
structural_annotation	UHGV-0034798_23	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_24	phrog_885	74.9	9.2e-22	major tail protein	tail
UniRef90	UHGV-0034798_24	UniRef90_A0A843J9F0	199.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0034798_24	1504822.CCNO01000012_gene492	224.0	0	N/A	N/A
structural_annotation	UHGV-0034798_24	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_25	phrog_18646	69.3	6e-20	N/A	unknown function
UniRef90	UHGV-0034798_25	UniRef90_B6CXF0	79.7	7.52e-17	Peptidase-colicin	N/A
eggNOG-mapper	UHGV-0034798_25	1121936.AUHI01000017_gene750	50.4	0.00000336	N/A	N/A
PHROG	UHGV-0034798_26	phrog_6900	253.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0034798_26	1123312.KB904569_gene357	274.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0034798_26	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0034798_26	MF_04138,COG5281	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034798_27	UniRef90_UPI00111F6E2C	97.1	2.46e-17	DNRLRE domain-containing protein	N/A
eggNOG-mapper	UHGV-0034798_27	1195236.CTER_5103	77.8	0.00000000000544	N/A	N/A
structural_annotation	UHGV-0034798_27	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_28	phrog_26795	106.7	1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0034798_28	742740.HMPREF9474_04294	122.0	5.67e-29	N/A	N/A
structural_annotation	UHGV-0034798_28	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034798_29	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034798_30	1519439.JPJG01000060_gene1892	82.0	0.000000000000266	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0034798_30	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
UniRef90	UHGV-0034798_32	UniRef90_A0A1Y4UW55	129.0	3.39e-37	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0034798_32	1007096.BAGW01000036_gene2665	107.0	2.82e-29	N/A	N/A
PHROG	UHGV-0034798_34	phrog_13256	61.9	6.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0034798_34	1226322.HMPREF1545_00166	72.4	9.14e-16	N/A	N/A
UniRef90	UHGV-0034798_35	UniRef90_A0A358M2Y7	229.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0034798_35	525254.HMPREF0072_1273	216.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0034798_35	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0034798_35	NF033743	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034798_36	UniRef90_A0A1C6JAI6	65.5	0.0000000000029	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0034798_36	PF16509,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0034798_37	K19167	111.9	8.2e-33	abiQ; protein AbiQ	N/A
PHROG	UHGV-0034798_37	phrog_9764	129.0	2.8e-38	N/A	unknown function
UniRef90	UHGV-0034798_37	UniRef90_A0A845R8D8	226.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0034798_37	1519439.JPJG01000060_gene1906	171.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0034798_37	AbiQ	150.5	1.4013e-44	AbiQ	Abi
Pfam	UHGV-0034798_37	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-0034798_37	PF13958	N/A	N/A	N/A	N/A
KOfam	UHGV-0034798_38	K07497	125.9	4.8e-37	K07497; putative transposase	N/A
PHROG	UHGV-0034798_38	phrog_157	232.3	0	transposase	integration and excision
UniRef90	UHGV-0034798_38	UniRef90_A0A417H848	567.0	0	IS3 family transposase	N/A
eggNOG-mapper	UHGV-0034798_38	931276.Cspa_c04130	186.0	0	Integrase core domain	N/A
Pfam	UHGV-0034798_38	PF13276	N/A	N/A	HTH-like domain	HTH_21
Pfam	UHGV-0034798_38	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0034798_38	PF13683	N/A	N/A	Integrase core domain	rve_3
NCBIFam	UHGV-0034798_38	NF033516.0	N/A	N/A	IS3 family transposase	N/A
COG	UHGV-0034798_38	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0034798_38	PF00665,PF13276,NF033516,COG2801	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034798_39	UniRef90_A0A417H8C0	202.0	0	Helix-turn-helix domain-containing protein	N/A
COG	UHGV-0034798_41	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
PHROG	UHGV-0034798_44	phrog_3754	102.2	3.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0034798_44	476272.RUMHYD_01764	149.0	4.2039e-45	N/A	N/A
PHROG	UHGV-0034798_45	phrog_21718	71.3	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0034798_45	397290.C810_05210	55.5	0.00000024	N/A	N/A
PHROG	UHGV-0034798_46	phrog_22984	74.6	6.5e-22	N/A	unknown function
PHROG	UHGV-0034798_47	phrog_16490	127.7	9.8e-38	N/A	unknown function
eggNOG-mapper	UHGV-0034798_47	1408437.JNJN01000043_gene803	122.0	3.1e-31	N/A	N/A
PHROG	UHGV-0034798_48	phrog_20016	177.1	0	N/A	unknown function
UniRef90	UHGV-0034798_48	UniRef90_A0A285PT46	191.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0034798_48	1226322.HMPREF1545_00077	160.0	0	N/A	N/A
structural_annotation	UHGV-0034798_48	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034798_49	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034798_50	1232443.BAIA02000078_gene6	62.0	0.000000000106	N/A	N/A
KOfam	UHGV-0034798_51	K14059	138.9	5.79997e-41	int; integrase	N/A
PHROG	UHGV-0034798_51	phrog_1	133.2	2.4e-39	integrase	integration and excision
UniRef90	UHGV-0034798_51	UniRef90_UPI001874116E	381.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0034798_51	1235835.C814_03141	192.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0034798_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0034798_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0034798_51	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0034798_52	K07729	42.1	0.000000000014	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0034798_52	UniRef90_A0A3D3Y4M8	130.0	2.77e-34	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0034798_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0034798_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0034798_52	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034798_53	457415.HMPREF1006_00639	55.5	0.0000000723	nuclease	N/A
Pfam	UHGV-0034798_53	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-0034798_53	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
KOfam	UHGV-0034798_55	K22300	47.6	0.00000000000035	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0034798_55	phrog_8	43.1	0.0000000000087	transcriptional regulator	transcription regulation
UniRef90	UHGV-0034798_55	UniRef90_A0A1Y4L0A2	114.0	3.84e-30	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0034798_55	411471.SUBVAR_05818	98.2	9.09e-25	sequence-specific DNA binding	N/A
Pfam	UHGV-0034798_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0034798_55	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0034798_55	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034798_57	UniRef90_UPI000F0633F9	77.4	2.14e-17	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0034798_57	1235835.C814_03153	68.2	0.0000000000000195	N/A	N/A
structural_annotation	UHGV-0034798_57	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0034798_62	K00558	152.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0034798_62	phrog_363	240.0	0	DNA methyltransferase	other
UniRef90	UHGV-0034798_62	UniRef90_G4KRB8	335.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0034798_62	693746.OBV_01900	335.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0034798_62	MTase_II_00058	123.1	2.6e-36	Type II methyltransferase	RM
Pfam	UHGV-0034798_62	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0034798_62	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0034798_62	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0034798_62	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_64	phrog_3136	118.4	1.9e-35	N/A	unknown function
UniRef90	UHGV-0034798_64	UniRef90_A0A3D0HBD2	113.0	8.46e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0034798_64	642492.Clole_1416	52.4	0.00000164	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0034798_64	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0034798_64	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0034798_64	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0034798_65	phrog_38832	81.3	8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0034798_65	1232443.BAIA02000078_gene48	124.0	5.66e-35	N/A	N/A
structural_annotation	UHGV-0034798_65	PF18300,MF_01549,TIGR02450	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034798_66	1232449.BAHV02000018_gene1537	121.0	1.63e-33	N/A	N/A
PHROG	UHGV-0034798_67	phrog_9298	56.7	2.6e-16	radical SAM domain protein	other
UniRef90	UHGV-0034798_67	UniRef90_A0A1C5YXG3	313.0	0	Radical SAM superfamily	N/A
eggNOG-mapper	UHGV-0034798_67	742738.HMPREF9460_03770	298.0	0	radical SAM domain protein	N/A
COG	UHGV-0034798_67	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0034798_67	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A