UHGV-0034867 (vOTU-144083)

Viral Genome: UHGV-0034867

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0034867
vOTU ID	vOTU-144083
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_8_2273__NODE_2741_length_36008_cov_4.059392
Associated BioSample	SAMEA4766207
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.14 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.28
Jumbo phage	No

Genome content
Genome length (bp)	36,008
GC content	40.90%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	32
CDS density	94%
Average CDS length (bps)	1,057.97
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0034867_1	UniRef90_A0A6L5YT34	80.1	4.44e-16	Subtilin biosynthesis sensor protein SpaK	N/A
eggNOG-mapper	UHGV-0034867_1	1410626.JHXB01000007_gene2576	135.0	2.08e-38	N/A	N/A
eggNOG-mapper	UHGV-0034867_2	1384066.JAGT01000001_gene766	51.2	0.00000295	Bacterial extracellular solute-binding protein	N/A
COG	UHGV-0034867_2	COG1653	N/A	N/A	ABC-type glycerol-3-phosphate transport system, periplasmic component	N/A
eggNOG-mapper	UHGV-0034867_3	1458462.JNLK01000001_gene710	108.0	7.6e-25	diguanylate cyclase	N/A
COG	UHGV-0034867_3	COG2199	N/A	N/A	GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants	N/A
KOfam	UHGV-0034867_4	K07192	348.5	0	FLOT; flotillin	N/A
UniRef90	UHGV-0034867_4	UniRef90_R5JVM8	608.0	0	PHB domain-containing protein	N/A
eggNOG-mapper	UHGV-0034867_4	1410638.JHXJ01000018_gene553	482.0	0	Flotillin	N/A
Pfam	UHGV-0034867_4	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
Pfam	UHGV-0034867_4	PF15975	N/A	N/A	Flotillin	Flot
COG	UHGV-0034867_4	COG2268	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034867_4	PF01145,MF_01562,NF008181,COG2268	N/A	N/A	N/A	N/A
KOfam	UHGV-0034867_5	K07074	170.8	0	N/A	N/A
PHROG	UHGV-0034867_5	phrog_388	164.6	0	nucleotidyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034867_5	UniRef90_A0A6L9HJ32	545.0	0	Nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0034867_5	1235802.C823_04709	560.0	0	Predicted nucleotidyltransferase	N/A
Pfam	UHGV-0034867_5	PF10127	N/A	N/A	RNA repair pathway DNA polymerase beta family	RlaP
COG	UHGV-0034867_5	COG3541	N/A	N/A	Predicted nucleotidyltransferase YcgL	N/A
structural_annotation	UHGV-0034867_5	PF10127,NF000181,COG3541	N/A	N/A	N/A	N/A
KOfam	UHGV-0034867_6	K10761	142.6	2.79979e-42	THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79]	N/A
PHROG	UHGV-0034867_6	phrog_4717	302.6	0	tRNA-His guanylyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034867_6	UniRef90_A0A415MDY8	404.0	0	Thg1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0034867_6	742735.HMPREF9467_00875	364.0	0	tRNAHis guanylyltransferase	N/A
Pfam	UHGV-0034867_6	PF04446	N/A	N/A	tRNAHis guanylyltransferase	Thg1
COG	UHGV-0034867_6	COG4021	N/A	N/A	tRNA(His) 5'-end guanylyltransferase	N/A
structural_annotation	UHGV-0034867_6	PF04446,PF14413,COG4021	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034867_7	UniRef90_A0A8F2EYS9	298.0	0	N/A	N/A
eggNOG-mapper	UHGV-0034867_7	203119.Cthe_2873	54.3	0.00000508	N/A	N/A
Pfam	UHGV-0034867_7	PF12158	N/A	N/A	N/A	DUF3592
UniRef90	UHGV-0034867_9	UniRef90_UPI001E4D989F	87.0	3.14e-20	CTP synthase	N/A
eggNOG-mapper	UHGV-0034867_9	1232447.BAHW02000005_gene154	64.3	0.00000000000435	N/A	N/A
PHROG	UHGV-0034867_10	phrog_1129	68.3	8.2e-20	holin	lysis
UniRef90	UHGV-0034867_10	UniRef90_UPI001BBD0ED4	108.0	4.89e-29	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0034867_10	411461.DORFOR_00721	94.4	3.33e-24	N/A	N/A
Pfam	UHGV-0034867_10	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0034867_10	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034867_11	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0034867_12	phrog_38044	67.0	9e-28	N/A	unknown function
UniRef90	UHGV-0034867_12	UniRef90_A0A3S5FBF2	161.0	3.96e-36	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-0034867_12	428127.EUBDOL_01565	122.0	5.62e-25	cellulase activity	N/A
COG	UHGV-0034867_12	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0034867_13	phrog_26795	54.4	9.5e-17	N/A	unknown function
UniRef90	UHGV-0034867_13	UniRef90_UPI001C38532D	499.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0034867_13	478749.BRYFOR_08511	476.0	0	N/A	N/A
structural_annotation	UHGV-0034867_13	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
KOfam	UHGV-0034867_14	K24485	43.0	0.0000000000031	FNDC3; fibronectin type III domain-containing protein 3	N/A
PHROG	UHGV-0034867_14	phrog_380	44.3	0.000000000003	endolysin	lysis
UniRef90	UHGV-0034867_14	UniRef90_UPI001314CF95	922.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0034867_14	478749.BRYFOR_08512	844.0	0	Fibronectin type 3 domain	N/A
Pfam	UHGV-0034867_14	PF01476	N/A	N/A	LysM domain	LysM
Pfam	UHGV-0034867_14	PF00041	N/A	N/A	Fibronectin type III domain	fn3
structural_annotation	UHGV-0034867_14	PF06995,PF02010,PF18001,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0034867_15	phrog_16277	127.3	6e-38	tail length tape measure protein	tail
UniRef90	UHGV-0034867_15	UniRef90_A0A374JNH6	1082.0	0	Cpl-7 domain-containing protein	N/A
eggNOG-mapper	UHGV-0034867_15	742733.HMPREF9469_05020	286.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0034867_15	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-0034867_15	PF08230	N/A	N/A	CW_7 repeat	CW_7
NCBIFam	UHGV-0034867_15	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0034867_15	COG5412	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-0034867_16	UniRef90_A0A374JQF3	199.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0034867_16	665956.HMPREF1032_00685	189.0	0	N/A	N/A
structural_annotation	UHGV-0034867_16	TIGR01725	N/A	N/A	N/A	N/A
KOfam	UHGV-0034867_17	K07273	175.6	0	acm; lysozyme	N/A
PHROG	UHGV-0034867_17	phrog_291	187.7	0	endolysin	lysis
UniRef90	UHGV-0034867_17	UniRef90_A0A174IKV4	362.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0034867_17	521003.COLINT_02363	284.0	0	CW_7 repeat	N/A
Pfam	UHGV-0034867_17	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0034867_17	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0034867_17	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0034867_17	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0034867_17	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0034867_18	phrog_4338	249.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0034867_18	428125.CLOLEP_01417	194.0	0	N/A	N/A
PHROG	UHGV-0034867_19	phrog_4282	164.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0034867_19	478749.BRYFOR_08517	139.0	3.28001e-40	N/A	N/A
PHROG	UHGV-0034867_20	phrog_2645	295.9	0	major tail protein	tail
UniRef90	UHGV-0034867_20	UniRef90_A0A7X7CG90	239.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0034867_20	742733.HMPREF9469_05026	225.0	0	N/A	N/A
structural_annotation	UHGV-0034867_20	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034867_21	478749.BRYFOR_08519	129.0	1.41e-37	N/A	N/A
structural_annotation	UHGV-0034867_21	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0034867_22	phrog_4270	125.6	1.5e-37	N/A	unknown function
eggNOG-mapper	UHGV-0034867_22	478749.BRYFOR_08520	140.0	8.54932e-42	N/A	N/A
structural_annotation	UHGV-0034867_22	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
KOfam	UHGV-0034867_24	K06904	62.9	3.7e-18	N/A	N/A
PHROG	UHGV-0034867_24	phrog_3270	732.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0034867_24	UniRef90_UPI001C0324BF	926.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0034867_24	478749.BRYFOR_08521	712.0	0	N/A	N/A
structural_annotation	UHGV-0034867_24	PF04586,PF06673,TIGR01543,TIGR01554,COG3740,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0034867_25	phrog_12	129.9	1.7e-38	portal protein	head and packaging
UniRef90	UHGV-0034867_25	UniRef90_A0A174YU68	589.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0034867_25	742733.HMPREF9469_05032	577.0	0	Phage portal protein	N/A
Pfam	UHGV-0034867_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
structural_annotation	UHGV-0034867_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0034867_26	phrog_9	242.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0034867_26	UniRef90_UPI00189EC794	1033.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0034867_26	742740.HMPREF9474_02272	986.0	0	Phage Terminase	N/A
Pfam	UHGV-0034867_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0034867_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0034867_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0034867_27	phrog_32444	48.1	4.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0034867_27	428125.CLOLEP_01408	55.5	0.000000517	N/A	N/A
PHROG	UHGV-0034867_28	phrog_4247	168.1	0	virion structural protein	head and packaging
UniRef90	UHGV-0034867_28	UniRef90_A0A373C8E1	144.0	1.87003e-41	Structural protein	N/A
eggNOG-mapper	UHGV-0034867_28	478749.BRYFOR_08528	145.0	2.21405e-43	N/A	N/A
PHROG	UHGV-0034867_29	phrog_4321	214.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0034867_29	411460.RUMTOR_01352	209.0	0	N/A	N/A
PHROG	UHGV-0034867_30	phrog_4259	136.5	5.79997e-41	N/A	unknown function
eggNOG-mapper	UHGV-0034867_30	742740.HMPREF9474_02276	99.4	1.26e-25	N/A	N/A
PHROG	UHGV-0034867_31	phrog_4303	107.6	5.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-0034867_31	742733.HMPREF9469_05038	91.7	2.44e-23	N/A	N/A
PHROG	UHGV-0034867_32	phrog_4291	299.4	0	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034867_32	UniRef90_A0A7C6Y9R1	255.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0034867_32	478749.BRYFOR_08534	394.0	0	N/A	N/A
Pfam	UHGV-0034867_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0034867_32	PF02796,NF040595	N/A	N/A	N/A	N/A