UHGV-0034961 (vOTU-044412)

Viral Genome: UHGV-0034961

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0034961
vOTU ID	vOTU-044412
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_13_CHE1006Z__NODE_1579_length_41505_cov_8.199841
Associated BioSample	SAMEA4969129
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.83
Jumbo phage	No

Genome content
Genome length (bp)	41,428
GC content	50.43%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	94%
Average CDS length (bps)	619.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0034961_1	phrog_27197	66.4	3.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0034961_1	886882.PPSC2_p0363	90.9	2.11e-20	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0034961_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0034961_1	NF007410	N/A	N/A	N/A	N/A
KOfam	UHGV-0034961_2	K01449	48.9	0.00000000000011	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0034961_2	phrog_30550	139.6	9.6003e-42	N/A	unknown function
UniRef90	UHGV-0034961_2	UniRef90_A0A1Y4W1Z7	124.0	1.84e-32	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0034961_2	1519439.JPJG01000077_gene920	108.0	2.44e-28	Cell Wall Hydrolase	N/A
Pfam	UHGV-0034961_2	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
structural_annotation	UHGV-0034961_2	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
KOfam	UHGV-0034961_3	K00390	108.8	5.3e-32	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0034961_3	phrog_424	127.1	1.2e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0034961_3	UniRef90_UPI00164AFBC1	339.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0034961_3	1408437.JNJN01000032_gene2312	325.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0034961_3	BrxP_00001	79.5	9.2e-24	BrxP	BREX
Pfam	UHGV-0034961_3	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0034961_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0034961_3	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034961_4	UniRef90_A0A845MZZ9	82.8	3.73e-18	N/A	N/A
eggNOG-mapper	UHGV-0034961_4	406818.XBJ1_1178	52.8	0.0000000974	N/A	N/A
Pfam	UHGV-0034961_4	PF04448	N/A	N/A	N/A	DUF551
Pfam	UHGV-0034961_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0034961_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0034961_9	PF13560,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_11	phrog_111	153.0	1.4013e-45	DNA methyltransferase	other
UniRef90	UHGV-0034961_11	UniRef90_B0NAU8	200.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
eggNOG-mapper	UHGV-0034961_11	411468.CLOSCI_00567	200.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0034961_11	oMTase_00015	180.4	0	orphan methyltransferase	RM
Pfam	UHGV-0034961_11	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0034961_11	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_13	phrog_18716	139.1	1.10002e-41	N/A	unknown function
UniRef90	UHGV-0034961_13	UniRef90_A0A1J0GJP7	145.0	1.05938e-42	N/A	N/A
eggNOG-mapper	UHGV-0034961_13	665959.HMPREF1013_00856	118.0	7.68e-33	N/A	N/A
Pfam	UHGV-0034961_13	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0034961_13	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_14	phrog_5781	95.2	6.8e-28	N/A	unknown function
UniRef90	UHGV-0034961_14	UniRef90_A0A2V2FSM6	116.0	6.5e-32	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0034961_14	573061.Clocel_3558	94.4	6.57e-24	N/A	N/A
Pfam	UHGV-0034961_14	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0034961_14	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0034961_14	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_16	phrog_4973	55.0	0.0000000000000013	N/A	unknown function
UniRef90	UHGV-0034961_16	UniRef90_A0A3D3Y0P8	73.6	0.00000000000000131	DNA-binding protein	N/A
Pfam	UHGV-0034961_16	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0034961_16	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034961_18	UniRef90_A0A3C0NNN3	57.8	0.000000225	HTH psq-type domain-containing protein	N/A
KOfam	UHGV-0034961_19	K06909	136.7	2e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0034961_19	phrog_979	140.4	4.69435e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0034961_19	UniRef90_A0A3C0NMI6	629.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0034961_19	1410650.JHWL01000003_gene2834	556.0	0	N/A	N/A
Pfam	UHGV-0034961_19	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0034961_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0034961_19	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_20	phrog_156	294.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0034961_20	1410650.JHWL01000003_gene2833	496.0	0	N/A	N/A
structural_annotation	UHGV-0034961_20	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0034961_21	K07584	60.0	4.3e-17	N/A	N/A
PHROG	UHGV-0034961_21	phrog_4478	65.5	5.9e-19	peptidase	other
UniRef90	UHGV-0034961_21	UniRef90_A0A6N9P4C8	55.1	0.000000171	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0034961_21	1321815.HMPREF9193_01055	49.3	0.0000075	Cysteine protease Prp	N/A
Pfam	UHGV-0034961_21	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0034961_21	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034961_21	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_22	phrog_13908	178.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0034961_22	1410650.JHWL01000003_gene2831	95.5	1.25e-19	N/A	N/A
PHROG	UHGV-0034961_23	phrog_1357	199.5	0	major head protein	head and packaging
UniRef90	UHGV-0034961_23	UniRef90_A0A2V2CFL5	536.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0034961_23	1410650.JHWL01000003_gene2830	263.0	0	N/A	N/A
NCBIFam	UHGV-0034961_23	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0034961_23	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_25	phrog_12105	109.3	2.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-0034961_25	1519439.JPJG01000060_gene1891	67.8	0.000000000000757	N/A	N/A
PHROG	UHGV-0034961_26	phrog_511	207.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0034961_26	1410650.JHWL01000003_gene2827	259.0	0	N/A	N/A
structural_annotation	UHGV-0034961_26	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034961_28	1410650.JHWL01000003_gene2815	92.4	3.81e-17	N/A	N/A
eggNOG-mapper	UHGV-0034961_29	693746.OBV_01590	473.0	0	N/A	N/A
COG	UHGV-0034961_30	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0034961_31	phrog_10993	70.7	2.2e-20	Hoc-like head decoration	head and packaging
eggNOG-mapper	UHGV-0034961_31	718252.FP2_16970	82.4	0.0000000000000347	N/A	N/A
Pfam	UHGV-0034961_31	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0034961_31	PF19789,PF08244	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034961_32	1519439.JPJG01000060_gene1895	131.0	3.32e-36	N/A	N/A
structural_annotation	UHGV-0034961_32	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_34	phrog_21357	57.6	1.2e-16	endolysin	lysis
UniRef90	UHGV-0034961_34	UniRef90_UPI001BB47323	85.1	1.81e-16	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0034961_34	1007096.BAGW01000022_gene2648	73.6	0.000000000000634	CHAP domain	N/A
Pfam	UHGV-0034961_34	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0034961_34	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0034961_34	TIGR02594,COG3738	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_35	phrog_1863	66.9	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0034961_35	748224.HMPREF9436_01412	94.0	2.16e-24	N/A	N/A
PHROG	UHGV-0034961_36	phrog_10091	110.9	7.7e-33	holin	lysis
UniRef90	UHGV-0034961_36	UniRef90_A0A1Y4RHF4	130.0	5.3e-38	Phage holin	N/A
eggNOG-mapper	UHGV-0034961_36	445975.COLSTE_02144	115.0	1.58e-32	Bacteriophage holin	N/A
Pfam	UHGV-0034961_36	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0034961_36	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0034961_36	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034961_36	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034961_37	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_38	phrog_3754	99.9	2.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0034961_38	476272.RUMHYD_01764	146.0	7.42688e-44	N/A	N/A
PHROG	UHGV-0034961_39	phrog_21718	91.4	9.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0034961_39	397290.C810_05210	94.0	1.54e-22	N/A	N/A
PHROG	UHGV-0034961_40	phrog_22984	77.1	1.7e-22	N/A	unknown function
PHROG	UHGV-0034961_41	phrog_16490	157.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0034961_41	1408437.JNJN01000043_gene803	138.0	1.44e-37	N/A	N/A
PHROG	UHGV-0034961_43	phrog_20016	189.2	0	N/A	unknown function
UniRef90	UHGV-0034961_43	UniRef90_A0A285PT46	199.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0034961_43	1226322.HMPREF1545_00077	167.0	0	N/A	N/A
structural_annotation	UHGV-0034961_43	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034961_44	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0034961_45	K14059	153.2	2.8026e-45	int; integrase	N/A
PHROG	UHGV-0034961_45	phrog_1	154.2	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0034961_45	UniRef90_R6I1Y0	335.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0034961_45	1384066.JAGT01000001_gene153	115.0	7.1e-27	Phage integrase family	N/A
Pfam	UHGV-0034961_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0034961_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0034961_45	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034961_46	UniRef90_A0A8D9UHA6	70.5	0.0000000000112	Helix-turn-helix XRE-family like protein	N/A
COG	UHGV-0034961_46	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0034961_46	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034961_49	UniRef90_A0A8D9PDV2	55.1	0.0000000276	DNA methyl phosphotriester repair domain protein	N/A
eggNOG-mapper	UHGV-0034961_49	1392493.JIAB01000001_gene1404	59.3	0.00000000156	repeat protein	N/A
COG	UHGV-0034961_49	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-0034961_52	phrog_8	42.8	0.00000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0034961_52	UniRef90_UPI001896E330	79.0	1.32e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0034961_52	663278.Ethha_2377	61.6	0.000000000152	sequence-specific DNA binding	N/A
Pfam	UHGV-0034961_52	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0034961_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0034961_52	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0034961_53	K22300	52.0	0.000000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0034961_53	phrog_8	43.3	0.0000000000075	transcriptional regulator	transcription regulation
UniRef90	UHGV-0034961_53	UniRef90_A0A810PZI0	73.9	3.71e-16	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0034961_53	693746.OBV_25500	62.4	0.00000000000245	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0034961_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0034961_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0034961_53	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034961_55	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_57	phrog_253	110.7	1.2e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034961_57	UniRef90_A0A1C5N4H2	111.0	2.93e-28	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0034961_57	1410670.JHXF01000015_gene2268	94.0	3.31e-22	Siphovirus Gp157	N/A
Pfam	UHGV-0034961_57	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0034961_57	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_58	phrog_7838	125.1	5.6e-37	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034961_58	UniRef90_A0A8D9UGW3	189.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0034961_58	742767.HMPREF9456_02052	161.0	0	N/A	N/A
structural_annotation	UHGV-0034961_58	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_59	phrog_72	46.7	0.00000000000024	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034961_59	UniRef90_A0A2Z4Q9W9	107.0	3.32e-26	NinB	N/A
eggNOG-mapper	UHGV-0034961_59	445972.ANACOL_01825	77.4	0.00000000000000165	N/A	N/A
structural_annotation	UHGV-0034961_59	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_60	phrog_7566	90.7	9.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0034961_60	508419.F8J187_9CAUD	99.8	3.09e-26	N/A	N/A
KOfam	UHGV-0034961_61	K03111	135.5	5.70001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0034961_61	phrog_44	141.6	4.19969e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034961_61	UniRef90_R6IDK3	213.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0034961_61	1007096.BAGW01000023_gene151	179.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0034961_61	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0034961_61	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0034961_61	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0034961_61	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0034961_61	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0034961_62	phrog_16304	98.7	5.6e-29	N/A	unknown function
UniRef90	UHGV-0034961_62	UniRef90_UPI001E560709	107.0	4.75e-25	N/A	N/A
eggNOG-mapper	UHGV-0034961_62	1345695.CLSA_c35700	57.0	0.00000142	DnaD domain protein	N/A
Pfam	UHGV-0034961_62	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0034961_62	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0034961_62	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0034961_63	K24213	47.9	0.00000000000015	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0034961_63	phrog_4433	87.6	1.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-0034961_63	445970.ALIPUT_01221	107.0	3.96e-24	DNA-templated transcription, initiation	N/A
Pfam	UHGV-0034961_63	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0034961_63	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A