UHGV-0035017 (vOTU-170457)

Viral Genome: UHGV-0035017

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0035017
vOTU ID	vOTU-170457
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_J_1_RAJ1015YZ__NODE_4562_length_28113_cov_7.988657
Associated BioSample	SAMEA4969165
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.14 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.61
Jumbo phage	No

Genome content
Genome length (bp)	28,113
GC content	41.01%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	91%
Average CDS length (bps)	624.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0035017_2	phrog_544	160.5	0	major head protein	head and packaging
UniRef90	UHGV-0035017_2	UniRef90_A0A395X7A1	665.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0035017_2	1232453.BAIF02000011_gene3359	383.0	0	N/A	N/A
Pfam	UHGV-0035017_2	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0035017_2	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_3	phrog_541	87.7	3.7e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0035017_3	476272.RUMHYD_01778	105.0	9.03e-27	N/A	N/A
PHROG	UHGV-0035017_5	phrog_355	53.4	0.0000000000000041	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035017_5	UniRef90_A0A415G5B2	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035017_5	397290.C810_05229	181.0	0	N/A	N/A
structural_annotation	UHGV-0035017_5	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_6	phrog_18218	86.4	2.6e-25	N/A	unknown function
UniRef90	UHGV-0035017_6	UniRef90_A0A8D9PGR5	99.0	3.33e-25	Holin	N/A
eggNOG-mapper	UHGV-0035017_6	411902.CLOBOL_03424	55.1	0.0000000114	N/A	N/A
PHROG	UHGV-0035017_7	phrog_3366	99.6	2.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0035017_7	476272.RUMHYD_01779	159.0	0	N/A	N/A
structural_annotation	UHGV-0035017_7	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_8	phrog_556	51.5	0.0000000000000015	minor head protein	head and packaging
UniRef90	UHGV-0035017_8	UniRef90_UPI000E4989EB	283.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0035017_8	476272.RUMHYD_01780	150.0	2.94273e-44	N/A	N/A
structural_annotation	UHGV-0035017_8	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_9	phrog_3266	90.7	1.1e-26	tail completion	connector
eggNOG-mapper	UHGV-0035017_9	476272.RUMHYD_01781	150.0	4.48416e-44	N/A	N/A
structural_annotation	UHGV-0035017_9	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_10	phrog_3099	132.6	2.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-0035017_10	411902.CLOBOL_00129	171.0	0	N/A	N/A
structural_annotation	UHGV-0035017_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_11	phrog_11299	72.3	6.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0035017_11	33035.JPJF01000106_gene3125	61.6	0.000000000414	N/A	N/A
structural_annotation	UHGV-0035017_11	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_12	phrog_706	135.1	4.3e-40	N/A	unknown function
UniRef90	UHGV-0035017_12	UniRef90_UPI001BAD00AD	214.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0035017_12	411459.RUMOBE_01383	346.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0035017_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0035017_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_13	phrog_1535	407.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0035017_13	UniRef90_A0A173R880	536.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0035017_13	476272.RUMHYD_01785	534.0	0	phage tail tape measure protein	N/A
COG	UHGV-0035017_13	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035017_13	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035017_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_15	phrog_6616	461.5	0	tail protein	tail
UniRef90	UHGV-0035017_15	UniRef90_UPI000E446134	1375.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0035017_15	33035.JPJF01000043_gene1002	231.0	0	N/A	N/A
structural_annotation	UHGV-0035017_15	PF05113,PF03921,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035017_17	411459.RUMOBE_04220	145.0	5.9401e-42	Histidine kinase	N/A
COG	UHGV-0035017_17	COG0642	N/A	N/A	Signal transduction histidine kinase	N/A
KOfam	UHGV-0035017_18	K04763	208.4	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0035017_18	phrog_1	175.2	0	integrase	integration and excision
UniRef90	UHGV-0035017_18	UniRef90_A0A416ZKZ8	449.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0035017_18	1235793.C809_01951	222.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0035017_18	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0035017_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035017_18	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0035017_18	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0035017_19	K07273	205.1	0	acm; lysozyme	N/A
PHROG	UHGV-0035017_19	phrog_291	161.9	0	endolysin	lysis
UniRef90	UHGV-0035017_19	UniRef90_A0A1C5RZF8	889.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0035017_19	476272.RUMHYD_02876	271.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0035017_19	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0035017_19	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0035017_19	PF01183,PF18342,PF14603,NF040678,TIGR04303,COG3757,COG3807	N/A	N/A	N/A	N/A
KOfam	UHGV-0035017_20	K06400	285.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0035017_20	phrog_95	315.5	0	integrase	integration and excision
UniRef90	UHGV-0035017_20	UniRef90_A0A412ELC2	1038.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0035017_20	33035.JPJF01000109_gene439	660.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0035017_20	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0035017_20	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0035017_20	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0035017_20	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0035017_20	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_21	phrog_4431	81.5	6.8e-24	N/A	unknown function
UniRef90	UHGV-0035017_21	UniRef90_A0A412ELU3	423.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0035017_21	1449343.JQLQ01000002_gene1561	62.4	0.0000000128	N/A	N/A
Pfam	UHGV-0035017_21	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
KOfam	UHGV-0035017_22	K11641	130.5	1e-38	natR; two-component system, LytTR family, response regulator NatR	N/A
PHROG	UHGV-0035017_22	phrog_8810	119.4	2.9e-35	N/A	unknown function
UniRef90	UHGV-0035017_22	UniRef90_A0A395X907	471.0	0	Stage 0 sporulation protein A homolog	N/A
eggNOG-mapper	UHGV-0035017_22	742740.HMPREF9474_03223	140.0	2.6e-38	LytTr DNA-binding domain	N/A
Pfam	UHGV-0035017_22	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-0035017_22	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-0035017_22	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-0035017_22	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
KOfam	UHGV-0035017_23	K22300	53.3	0.0000000000000058	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0035017_23	phrog_8	67.8	2.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035017_23	UniRef90_A0A8J8SBE0	86.3	1.34e-19	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0035017_23	706434.HMPREF9429_00594	75.1	8.52e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0035017_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0035017_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0035017_24	UniRef90_A0A3R6RM60	62.0	0.0000000000338	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0035017_24	1298920.KI911353_gene527	55.5	0.00000000382	N/A	N/A
structural_annotation	UHGV-0035017_24	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_28	phrog_478	119.9	1.2e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0035017_28	UniRef90_A0A373Q857	118.0	3.8e-31	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0035017_28	1111121.HMPREF1247_0834	102.0	2.21e-26	N/A	N/A
AcrCatalog	UHGV-0035017_30	cluster_17974	52.8	0.000000000000841	NA	N/A
structural_annotation	UHGV-0035017_31	PF10922,TIGR03741	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035017_33	NF001645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035017_34	UniRef90_R6RDX0	79.3	3.7e-18	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-0035017_35	phrog_2872	243.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035017_35	UniRef90_UPI0015715A02	377.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0035017_35	1256908.HMPREF0373_00658	342.0	0	AAA domain	N/A
Pfam	UHGV-0035017_35	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0035017_35	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_37	phrog_18107	257.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0035017_37	1256908.HMPREF0373_00659	236.0	0	N/A	N/A
structural_annotation	UHGV-0035017_37	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_38	phrog_3490	161.7	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035017_38	UniRef90_R9KEE1	269.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0035017_38	1256908.HMPREF0373_00660	269.0	0	N/A	N/A
Pfam	UHGV-0035017_38	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0035017_38	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0035017_40	K02316	70.1	3.2e-20	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0035017_40	phrog_11992	158.9	0	N/A	unknown function
UniRef90	UHGV-0035017_40	UniRef90_A0A412EM56	298.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0035017_40	476272.RUMHYD_01741	185.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0035017_40	drt-UG29	56.5	2.7e-16	DRT	DRT
Pfam	UHGV-0035017_40	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0035017_40	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0035017_40	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0035017_41	phrog_8841	434.2	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035017_41	UniRef90_A0A412EL97	827.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035017_41	476272.RUMHYD_01742	598.0	0	N/A	N/A
Pfam	UHGV-0035017_41	PF06048	N/A	N/A	N/A	DUF927
COG	UHGV-0035017_41	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035017_41	PF06048,TIGR03420,COG5519	N/A	N/A	N/A	N/A