UHGV-0035040 (vOTU-059565)

Viral Genome: UHGV-0035040

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0035040
vOTU ID	vOTU-059565
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_9_RAU0028AZ__NODE_921_length_35580_cov_24.683520
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9767
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.91
Jumbo phage	No

Genome content
Genome length (bp)	35,580
GC content	40.63%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	93%
Average CDS length (bps)	593.84
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0035040_1	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
KOfam	UHGV-0035040_2	K06400	324.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0035040_2	phrog_95	352.2	0	integrase	integration and excision
UniRef90	UHGV-0035040_2	UniRef90_B0NAW3	623.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-0035040_2	411468.CLOSCI_00582	623.0	0	Recombinase	N/A
Pfam	UHGV-0035040_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0035040_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0035040_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0035040_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0035040_2	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035040_4	1408311.JNJM01000007_gene933	152.0	1.16028e-42	N/A	N/A
Pfam	UHGV-0035040_4	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
KOfam	UHGV-0035040_5	K14623	347.5	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0035040_5	phrog_8036	392.0	0	N/A	unknown function
UniRef90	UHGV-0035040_5	UniRef90_A0A6N2UQZ1	437.0	0	DNA-damage-inducible protein D	N/A
eggNOG-mapper	UHGV-0035040_5	665950.HMPREF1025_02565	421.0	0	N/A	N/A
AcrCatalog	UHGV-0035040_5	cluster_17589	151.0	1.4013e-45	NA	N/A
PADLOC	UHGV-0035040_5	Specificity_I_00032	325.7	0	Type I specificity subunit	RM
Pfam	UHGV-0035040_5	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0035040_5	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0035040_5	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0035040_5	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_6	phrog_8	46.9	0.0000000000006	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035040_6	UniRef90_A0A0M6WJ36	174.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0035040_6	1410650.JHWL01000003_gene2857	70.9	0.0000000000000194	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0035040_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0035040_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0035040_6	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035040_7	UniRef90_A0A0M6WHS0	129.0	1.09e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0035040_7	887325.HMPREF0381_0113	53.9	0.00000000975	N/A	N/A
Pfam	UHGV-0035040_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0035040_7	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_11	phrog_9607	102.9	3.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0035040_11	1304866.K413DRAFT_4639	113.0	2.74e-29	N/A	N/A
structural_annotation	UHGV-0035040_11	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035040_13	UniRef90_A0A374JR06	68.9	0.0000000000000543	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0035040_13	1226325.HMPREF1548_06746	72.0	0.0000000000000015	N/A	N/A
Pfam	UHGV-0035040_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0035040_13	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035040_15	PF18066,NF007780,COG1544	N/A	N/A	N/A	N/A
KOfam	UHGV-0035040_19	K03427	51.1	0.000000000000017	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0035040_19	phrog_5696	232.8	0	N/A	unknown function
UniRef90	UHGV-0035040_19	UniRef90_A0A0M6WYD5	444.0	0	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0035040_19	1245471.PCA10_p0930	149.0	1.35001e-41	N-6 DNA Methylase	N/A
Pfam	UHGV-0035040_19	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0035040_19	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0035040_19	COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0035040_20	K04763	224.8	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0035040_20	phrog_1	158.7	0	integrase	integration and excision
UniRef90	UHGV-0035040_20	UniRef90_A0A6L5YHS5	349.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0035040_20	397291.C804_01139	240.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0035040_20	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0035040_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035040_20	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0035040_20	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0035040_21	K14059	162.9	0	int; integrase	N/A
PHROG	UHGV-0035040_21	phrog_1	158.2	0	integrase	integration and excision
UniRef90	UHGV-0035040_21	UniRef90_A0A0M6WVP0	608.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0035040_21	1280698.AUJS01000010_gene818	310.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0035040_21	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0035040_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035040_21	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0035040_21	PF00589,PF14659,MF_02055,NF001399,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0035040_22	K03497	127.1	1.9e-37	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0035040_22	phrog_6218	189.9	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035040_22	UniRef90_A0A174GZH1	896.0	0	Probable chromosome-partitioning protein parB	N/A
eggNOG-mapper	UHGV-0035040_22	411461.DORFOR_01144	230.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0035040_22	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0035040_22	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0035040_22	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0035040_22	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035040_23	PF18066,NF007780,COG1544	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035040_24	UniRef90_A0A417WAJ1	122.0	8.99e-34	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0035040_24	1235800.C819_02254	123.0	8.49e-35	HNH nucleases	N/A
KOfam	UHGV-0035040_27	K00558	226.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0035040_27	phrog_116	267.3	0	DNA methyltransferase	other
UniRef90	UHGV-0035040_27	UniRef90_A0A174GZ53	903.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0035040_27	1235800.C819_02255	704.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0035040_27	MTase_II_00020	112.1	5e-37	Type II methyltransferase	RM
Pfam	UHGV-0035040_27	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0035040_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0035040_27	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035040_29	483218.BACPEC_01162	55.8	0.00000000788	sequence-specific DNA binding	N/A
COG	UHGV-0035040_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0035040_30	UniRef90_A0A355TJG3	244.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0035040_30	397290.C810_00411	105.0	1.06e-27	ASCH domain	N/A
Pfam	UHGV-0035040_30	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0035040_30	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0035040_30	PF08819,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_33	phrog_3584	237.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035040_33	UniRef90_A0A4P8IFK4	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035040_33	411902.CLOBOL_03891	389.0	0	N/A	N/A
structural_annotation	UHGV-0035040_33	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_34	phrog_36	62.9	5.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035040_34	UniRef90_A0A7X9DAW2	56.6	0.000000169	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0035040_34	1540257.JQMW01000004_gene433	70.9	0.0000000000000826	N/A	N/A
structural_annotation	UHGV-0035040_34	PF07374,MF_00674,NF001074	N/A	N/A	N/A	N/A
KOfam	UHGV-0035040_35	K07451	43.8	0.0000000000045	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0035040_35	phrog_119	78.5	8.1e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035040_35	UniRef90_A0A0M6WIX4	220.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0035040_35	1405.DJ92_863	89.4	9.35e-22	HNH endonuclease	N/A
Pfam	UHGV-0035040_35	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0035040_35	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0035040_37	phrog_5110	97.5	8.1e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0035040_37	UniRef90_A0A1C5LZF0	108.0	2.45e-28	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0035040_37	349161.Dred_2608	77.0	5.39e-17	N/A	N/A
Pfam	UHGV-0035040_37	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0035040_37	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_38	phrog_9	247.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0035040_38	UniRef90_D4M588	1025.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0035040_38	1232452.BAIB02000007_gene1629	543.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0035040_38	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0035040_38	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0035040_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0035040_38	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_39	phrog_12	67.9	9.8e-20	portal protein	head and packaging
UniRef90	UHGV-0035040_39	UniRef90_UPI00156D5DC9	561.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0035040_39	1232452.BAIB02000007_gene1627	294.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0035040_39	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0035040_39	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0035040_39	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0035040_40	K01358	108.1	1.1e-31	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0035040_40	phrog_94	182.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0035040_40	UniRef90_A0A350VIU3	422.0	0	ATP-dependent Clp protease proteolytic subunit (Fragment)	N/A
eggNOG-mapper	UHGV-0035040_40	1235792.C808_00085	196.0	0	Clp protease	N/A
Pfam	UHGV-0035040_40	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0035040_40	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0035040_40	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_41	phrog_10	69.0	4.7e-20	major head protein	head and packaging
UniRef90	UHGV-0035040_41	UniRef90_UPI00156F222D	644.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0035040_41	1232452.BAIB02000007_gene1625	489.0	0	Phage capsid family	N/A
Pfam	UHGV-0035040_41	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0035040_41	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0035040_41	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0035040_41	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035040_43	UniRef90_UPI00189B1559	187.0	0	phage head closure protein	N/A
NCBIFam	UHGV-0035040_43	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0035040_43	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035040_44	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_45	phrog_5	40.6	0.000000000052	tail completion or Neck1 protein	connector
UniRef90	UHGV-0035040_45	UniRef90_D4M595	162.0	0	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0035040_45	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_46	phrog_88	107.0	1.5e-31	major tail protein	tail
UniRef90	UHGV-0035040_46	UniRef90_UPI0006C1EB28	278.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0035040_46	1487921.DP68_11355	53.1	0.00000536	phage major tail protein	N/A
NCBIFam	UHGV-0035040_46	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0035040_46	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035040_46	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0035040_48	K20282	45.2	0.00000000000023	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0035040_48	phrog_1533	490.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0035040_48	UniRef90_A0A374E9U4	728.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0035040_48	552396.HMPREF0863_01444	408.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0035040_48	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0035040_48	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0035040_48	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0035040_49	phrog_33	60.5	3.7e-17	distal tail protein Dit	tail
UniRef90	UHGV-0035040_49	UniRef90_A0A350VIV2	359.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0035040_49	1232452.BAIB02000007_gene1615	219.0	0	phage tail	N/A
NCBIFam	UHGV-0035040_49	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0035040_49	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0035040_49	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_50	phrog_13289	369.2	0	tail protein	tail
UniRef90	UHGV-0035040_50	UniRef90_A0A0M6WI67	1180.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0035040_50	1235798.C817_02568	447.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0035040_50	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0035040_50	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0035040_50	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0035040_50	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0035040_51	phrog_11037	140.3	1.6e-41	N/A	unknown function
UniRef90	UHGV-0035040_51	UniRef90_A0A0M6WKQ1	359.0	0	Phage_lysozyme2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0035040_51	33035.JPJF01000023_gene3229	168.0	0	N/A	N/A
Pfam	UHGV-0035040_51	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
structural_annotation	UHGV-0035040_51	PF18013	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035040_52	1235798.C817_04596	66.6	0.000000000224	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0035040_52	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0035040_53	phrog_15594	84.2	1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0035040_53	862969.SCI_1223	55.8	0.00000000801	N/A	N/A
structural_annotation	UHGV-0035040_53	PF16640,TIGR04488	N/A	N/A	N/A	N/A
COG	UHGV-0035040_54	COG1262	N/A	N/A	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	N/A
PHROG	UHGV-0035040_55	phrog_24103	82.8	2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0035040_55	665956.HMPREF1032_02937	87.0	9.7e-17	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0035040_55	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0035040_56	phrog_31573	67.6	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0035040_56	1410622.JNKY01000013_gene1449	87.0	0.00000000000000118	N/A	N/A
structural_annotation	UHGV-0035040_56	PF14606,PF01664,NF007819,COG2845	N/A	N/A	N/A	N/A