UHGV-0035074 (vOTU-044423)

Viral Genome: UHGV-0035074

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0035074
vOTU ID	vOTU-044423
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_D_15_CHE1003TZ__NODE_1212_length_39113_cov_46.791449
Associated BioSample	SAMEA4969128
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.71
Jumbo phage	No

Genome content
Genome length (bp)	39,042
GC content	54.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	91%
Average CDS length (bps)	583.18
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0035074_3	phrog_16490	49.8	0.000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0035074_3	476272.RUMHYD_01770	54.3	0.00000287	N/A	N/A
structural_annotation	UHGV-0035074_4	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0035074_6	K14059	158.6	0	int; integrase	N/A
PHROG	UHGV-0035074_6	phrog_1	189.9	0	integrase	integration and excision
UniRef90	UHGV-0035074_6	UniRef90_A0A174D176	575.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0035074_6	411471.SUBVAR_05137	277.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0035074_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035074_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0035074_6	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0035074_7	K07726	41.3	0.000000000029	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0035074_7	phrog_2328	41.7	0.000000000012	transcriptional repressor	transcription regulation
UniRef90	UHGV-0035074_7	UniRef90_A0A6N7TLT0	216.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0035074_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0035074_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0035074_7	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035074_10	UniRef90_A0A1W2B3I7	74.3	0.00000000000162	Ig-like domain (Group 2)	N/A
structural_annotation	UHGV-0035074_10	PF16900,NF040991	N/A	N/A	N/A	N/A
KOfam	UHGV-0035074_12	K22300	67.2	3.1e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0035074_12	phrog_8	56.0	7.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035074_12	UniRef90_A0A564SVW9	176.0	0	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-0035074_12	748224.HMPREF9436_01444	139.0	1.17e-40	N/A	N/A
Pfam	UHGV-0035074_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0035074_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0035074_12	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035074_13	PF04325	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_20	phrog_373	191.2	0	anti-repressor	transcription regulation
UniRef90	UHGV-0035074_20	UniRef90_UPI001C039A6C	395.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0035074_20	585506.HMPREF0877_0897	155.0	6.16571e-44	ORF6C domain	N/A
Pfam	UHGV-0035074_20	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0035074_20	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0035074_20	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0035074_20	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0035074_20	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035074_22	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035074_25	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_27	phrog_561	99.8	1.8e-29	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035074_27	UniRef90_UPI0011C8A287	139.0	1.21e-37	recombinase RecT	N/A
eggNOG-mapper	UHGV-0035074_27	742733.HMPREF9469_01849	134.0	3.27e-36	N/A	N/A
structural_annotation	UHGV-0035074_27	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0035074_28	K03111	138.5	7.69999e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0035074_28	phrog_44	144.6	4.40008e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035074_28	UniRef90_UPI001C00AA91	235.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0035074_28	718252.FP2_06770	214.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0035074_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0035074_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0035074_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0035074_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0035074_28	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0035074_29	K25373	49.0	0.000000000000086	ACRV1; acrosomal protein SP-10	N/A
PHROG	UHGV-0035074_29	phrog_14105	229.2	0	N/A	unknown function
UniRef90	UHGV-0035074_29	UniRef90_UPI001922144E	215.0	0	PPE family protein	N/A
eggNOG-mapper	UHGV-0035074_29	742740.HMPREF9474_02379	137.0	1.18e-36	dextransucrase activity	N/A
Pfam	UHGV-0035074_29	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0035074_29	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-0035074_30	phrog_15768	113.7	1.1e-33	N/A	unknown function
UniRef90	UHGV-0035074_30	UniRef90_A0A2J4JRQ7	250.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035074_30	748224.HMPREF9436_03357	125.0	2.02e-32	N/A	N/A
Pfam	UHGV-0035074_30	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0035074_30	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_33	phrog_757	224.0	0	DNA methyltransferase	other
UniRef90	UHGV-0035074_33	UniRef90_UPI001A9BD7A0	219.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0035074_33	748224.HMPREF9436_03069	230.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0035074_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0035074_33	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0035074_34	K01160	62.1	1.7e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0035074_34	phrog_34	62.0	1.3e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035074_34	UniRef90_A0A844DBG8	224.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0035074_34	875454.BAEW01000002_gene491	127.0	2.6e-36	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0035074_34	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0035074_34	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0035074_34	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035074_36	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035074_37	PF17941,MF_01917,NF010490,COG3886	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_38	phrog_2412	53.4	0.0000000000000046	N/A	unknown function
KOfam	UHGV-0035074_39	K06909	126.9	2.2e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0035074_39	phrog_10250	136.7	9.40005e-41	N/A	unknown function
UniRef90	UHGV-0035074_39	UniRef90_A0A3A6EEP8	668.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0035074_39	1226322.HMPREF1545_00043	464.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0035074_39	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0035074_39	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0035074_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0035074_39	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_40	phrog_533	355.6	0	portal protein	head and packaging
UniRef90	UHGV-0035074_40	UniRef90_A0A291T9A9	727.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0035074_40	748224.HMPREF9436_03340	725.0	0	N/A	N/A
structural_annotation	UHGV-0035074_40	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_41	phrog_581	342.9	0	minor head protein	head and packaging
UniRef90	UHGV-0035074_41	UniRef90_D4K446	590.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0035074_41	718252.FP2_06690	590.0	0	N/A	N/A
Pfam	UHGV-0035074_41	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0035074_41	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035074_41	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_43	phrog_194	54.0	0.0000000000000019	head scaffolding protein	head and packaging
UniRef90	UHGV-0035074_43	UniRef90_A0A1C6FYX1	138.0	2.52e-38	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0035074_43	663278.Ethha_0497	137.0	8.47e-39	N/A	N/A
Pfam	UHGV-0035074_43	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0035074_43	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_44	phrog_10	189.9	0	major head protein	head and packaging
UniRef90	UHGV-0035074_44	UniRef90_A0A2A7AII3	520.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0035074_44	1120998.AUFC01000030_gene2236	405.0	0	Phage capsid family	N/A
Pfam	UHGV-0035074_44	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0035074_44	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0035074_44	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0035074_44	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_45	phrog_541	77.7	1.4e-22	head-tail adaptor	connector
PHROG	UHGV-0035074_46	phrog_3366	91.6	8.5e-27	N/A	unknown function
Pfam	UHGV-0035074_46	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0035074_46	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_47	phrog_556	83.4	2.2e-24	minor head protein	head and packaging
UniRef90	UHGV-0035074_47	UniRef90_UPI000B10EF5E	105.0	5.03e-26	minor capsid protein	N/A
eggNOG-mapper	UHGV-0035074_47	718252.FP2_06630	99.8	1.08e-24	Minor capsid protein	N/A
Pfam	UHGV-0035074_47	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0035074_47	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_48	phrog_3266	116.5	1.4e-34	tail completion	connector
UniRef90	UHGV-0035074_48	UniRef90_UPI001F2730AA	120.0	3.68e-32	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0035074_48	632245.CLP_1653	101.0	2.39e-25	N/A	N/A
structural_annotation	UHGV-0035074_48	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035074_49	UniRef90_A0A174M1L1	101.0	3.91e-23	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0035074_49	748224.HMPREF9436_03330	149.0	1.7236e-43	N/A	N/A
structural_annotation	UHGV-0035074_49	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_50	phrog_4450	49.6	0.000000000000073	N/A	unknown function
structural_annotation	UHGV-0035074_50	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_51	phrog_706	112.4	3.6e-33	N/A	unknown function
UniRef90	UHGV-0035074_51	UniRef90_UPI0011AF1F88	115.0	1.94e-28	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0035074_51	663278.Ethha_0101	99.0	3.9e-23	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0035074_51	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0035074_51	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_52	phrog_9959	86.0	2.5e-25	tail length tape measure protein	tail
UniRef90	UHGV-0035074_52	UniRef90_A0A844DDD5	308.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0035074_52	411470.RUMGNA_02228	147.0	7.9e-34	tape measure	N/A
Pfam	UHGV-0035074_52	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0035074_52	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0035074_52	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0035074_52	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_53	phrog_33	63.9	4e-18	distal tail protein Dit	tail
UniRef90	UHGV-0035074_53	UniRef90_A0A1C6G0J5	77.0	0.000000000000235	Phage tail protein	N/A
structural_annotation	UHGV-0035074_53	PF20753,PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_54	phrog_18110	65.5	5.7e-19	N/A	unknown function
UniRef90	UHGV-0035074_54	UniRef90_A0A1Y3TWK1	191.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0035074_54	871584.D9ZNF0_9CAUD	61.6	0.00000021	peptidoglycan catabolic process	N/A
Pfam	UHGV-0035074_54	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
structural_annotation	UHGV-0035074_54	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0035074_55	K02238	75.6	4.5e-22	comEC; competence protein ComEC	N/A
PHROG	UHGV-0035074_55	phrog_7043	54.9	5.5e-16	tail protein	tail
eggNOG-mapper	UHGV-0035074_55	397287.C807_00752	67.8	0.00000000419	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0035074_55	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
COG	UHGV-0035074_55	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-0035074_55	PF10651,NF038186	N/A	N/A	N/A	N/A
KOfam	UHGV-0035074_56	K07273	165.9	0	acm; lysozyme	N/A
PHROG	UHGV-0035074_56	phrog_291	141.2	9.39991e-42	endolysin	lysis
UniRef90	UHGV-0035074_56	UniRef90_UPI001D0EE7D8	256.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0035074_56	748224.HMPREF9436_00154	247.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0035074_56	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0035074_56	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0035074_56	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0035074_57	phrog_1863	74.9	6.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0035074_57	748224.HMPREF9436_00408	107.0	1.35e-29	N/A	N/A
PHROG	UHGV-0035074_58	phrog_263	87.6	8.8e-26	holin	lysis
UniRef90	UHGV-0035074_58	UniRef90_A0A329UCA4	108.0	2.69e-29	Phage holin	N/A
eggNOG-mapper	UHGV-0035074_58	1121344.JHZO01000003_gene952	100.0	1e-26	SPP1 phage holin	N/A
Pfam	UHGV-0035074_58	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0035074_58	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0035074_58	PF04688,TIGR01592	N/A	N/A	N/A	N/A
KOfam	UHGV-0035074_59	K24213	82.3	3.6e-24	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0035074_59	phrog_6320	82.2	9.1e-24	tail fiber protein	tail
eggNOG-mapper	UHGV-0035074_59	411483.FAEPRAA2165_00757	155.0	1.73e-39	N/A	N/A
Pfam	UHGV-0035074_59	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen