UHGV-0035141 (vOTU-044425)

Viral Genome: UHGV-0035141

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0035141
vOTU ID	vOTU-044425
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_D_21_CHE1011TZ__NODE_910_length_42733_cov_50.516926
Associated BioSample	SAMEA4969132
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9578
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.72
Jumbo phage	No

Genome content
Genome length (bp)	42,656
GC content	68.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	90%
Average CDS length (bps)	580.91
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0035141_1	K06400	322.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0035141_1	phrog_95	306.5	0	integrase	integration and excision
UniRef90	UHGV-0035141_1	UniRef90_A0A3G9KAD9	324.0	0	Site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-0035141_1	1235835.C814_01150	263.0	0	N/A	N/A
Pfam	UHGV-0035141_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0035141_1	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0035141_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0035141_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_2	phrog_24502	59.4	8.9e-17	zinc-finger domain protein	other
eggNOG-mapper	UHGV-0035141_2	947980.E9LUL0_9CAUD	52.0	0.00000603	N/A	N/A
UniRef90	UHGV-0035141_3	UniRef90_G1WJ16	85.9	4.26e-19	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0035141_3	742742.HMPREF9452_01329	85.9	7.15e-20	Helix-turn-helix	N/A
COG	UHGV-0035141_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0035141_4	K07729	45.4	0.0000000000017	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0035141_4	phrog_8	45.7	0.0000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035141_4	UniRef90_A0A0R1UKZ8	53.9	0.0000000642	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0035141_4	1235797.C816_01410	50.1	0.00000302	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0035141_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0035141_4	COG1395	N/A	N/A	Predicted transcriptional regulator	N/A
KOfam	UHGV-0035141_11	K01160	52.4	0.000000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0035141_11	phrog_140	81.7	1.1e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035141_11	UniRef90_UPI0009323E96	100.0	5.62e-24	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0035141_11	1504822.CCNO01000013_gene309	103.0	3.45e-26	crossover junction endodeoxyribonuclease activity	N/A
Pfam	UHGV-0035141_11	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0035141_11	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0035141_11	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_12	phrog_34396	175.9	0	N/A	unknown function
UniRef90	UHGV-0035141_12	UniRef90_UPI0009355547	142.0	1.74e-36	N/A	N/A
eggNOG-mapper	UHGV-0035141_12	469378.Ccur_02980	67.0	0.000000000826	N/A	N/A
Pfam	UHGV-0035141_12	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0035141_12	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_13	phrog_561	92.0	2.6e-28	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035141_13	UniRef90_A0A086Z1J6	255.0	0	Putative gp43	N/A
eggNOG-mapper	UHGV-0035141_13	1504822.CCNO01000013_gene307	279.0	0	N/A	N/A
structural_annotation	UHGV-0035141_13	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0035141_14	K03111	141.4	9.99967e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0035141_14	phrog_44	130.3	1.5e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035141_14	UniRef90_UPI000E3BD68B	186.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0035141_14	936550.HMPREF1492_1410	180.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0035141_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0035141_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0035141_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0035141_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0035141_14	PF00436,MF_00984,NF005851,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0035141_15	K00558	243.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0035141_15	phrog_116	286.1	0	DNA methyltransferase	other
UniRef90	UHGV-0035141_15	UniRef90_A0A412AQ32	421.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0035141_15	1384484.AEQU_0051	418.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0035141_15	MTase_II_00058	123.4	0	Type II methyltransferase	RM
Pfam	UHGV-0035141_15	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0035141_15	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0035141_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0035141_15	PF00145,MF_01547,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035141_19	PF06530	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_20	phrog_2044	62.2	7.6e-18	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0035141_20	999413.HMPREF1094_00228	51.2	0.00000021	N/A	N/A
structural_annotation	UHGV-0035141_20	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_22	phrog_21525	50.8	0.000000000000026	N/A	unknown function
PHROG	UHGV-0035141_24	phrog_599	48.0	0.0000000000003	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0035141_24	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0035141_24	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0035141_24	PF14354,NF007260	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035141_25	PF01649,MF_00500,TIGR00029,COG0268	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_27	phrog_478	119.7	1.3e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0035141_27	UniRef90_R6R5K5	117.0	3.72e-31	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0035141_27	1111121.HMPREF1247_0834	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035141_29	521003.COLINT_02330	53.5	0.00000126	N/A	N/A
PHROG	UHGV-0035141_31	phrog_3392	142.5	3.20057e-42	N/A	unknown function
eggNOG-mapper	UHGV-0035141_31	1217710.F969_00044	119.0	3.14e-30	N/A	N/A
PHROG	UHGV-0035141_33	phrog_5708	121.5	9.9e-36	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035141_33	UniRef90_UPI0018994D15	135.0	7.65e-36	replisome organizer	N/A
eggNOG-mapper	UHGV-0035141_33	1507.HMPREF0262_00303	127.0	3.22e-33	DnaD domain protein	N/A
COG	UHGV-0035141_33	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0035141_34	K02315	97.5	1.7e-28	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0035141_34	phrog_50	76.7	4e-22	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035141_34	UniRef90_A0A3G9JWL1	146.0	9.58e-40	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0035141_34	479437.Elen_1499	83.2	2.14e-16	IstB-like ATP binding protein	N/A
Pfam	UHGV-0035141_34	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0035141_34	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0035141_34	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035141_41	UniRef90_A0A1E8VUD2	75.1	4.07e-16	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0035141_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0035141_42	K14060	153.3	1.4013e-45	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0035141_42	phrog_125	165.2	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035141_42	UniRef90_UPI001BB21D57	248.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0035141_42	1408423.JHYA01000001_gene988	184.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0035141_42	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0035141_42	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0035141_42	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_43	phrog_38	198.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0035141_43	UniRef90_UPI001106681D	833.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0035141_43	1121866.AUGK01000003_gene1428	387.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0035141_43	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0035141_43	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035141_43	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_44	phrog_64	151.3	4.2039e-45	portal protein	head and packaging
UniRef90	UHGV-0035141_44	UniRef90_UPI001C94E255	518.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0035141_44	1121866.AUGK01000003_gene1429	299.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0035141_44	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0035141_44	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035141_45	UniRef90_UPI001C9809E0	74.7	0.00000000000027	N/A	N/A
Pfam	UHGV-0035141_45	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0035141_45	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_46	phrog_247	210.6	0	major head protein	head and packaging
UniRef90	UHGV-0035141_46	UniRef90_UPI001106BB9B	404.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0035141_46	903814.ELI_3208	244.0	0	N/A	N/A
structural_annotation	UHGV-0035141_46	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035141_47	UniRef90_UPI001C9486FC	116.0	2.46e-31	phage head-tail connector protein	N/A
Pfam	UHGV-0035141_47	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0035141_47	TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035141_49	UniRef90_UPI001C963648	91.3	2.42e-20	HK97 gp10 family phage protein	N/A
structural_annotation	UHGV-0035141_49	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035141_50	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_51	phrog_158	51.0	0.000000000000027	major tail protein	tail
UniRef90	UHGV-0035141_51	UniRef90_UPI001106E87B	184.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0035141_51	1232453.BAIF02000058_gene1634	81.6	1.24e-17	N/A	N/A
Pfam	UHGV-0035141_51	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0035141_51	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035141_52	UniRef90_UPI0009316611	77.8	9.17e-16	N/A	N/A
Pfam	UHGV-0035141_52	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0035141_52	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_54	phrog_1535	149.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0035141_54	1121866.AUGK01000003_gene1437	229.0	0	phage tail tape measure protein	N/A
COG	UHGV-0035141_54	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0035141_55	phrog_1194	83.9	1.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0035141_55	1121866.AUGK01000003_gene1438	127.0	4.55e-36	N/A	N/A
Pfam	UHGV-0035141_55	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0035141_55	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_56	phrog_6616	440.0	0	tail protein	tail
UniRef90	UHGV-0035141_56	UniRef90_A0A2Y9BMC1	292.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0035141_56	1121866.AUGK01000003_gene1439	361.0	0	Phage minor structural protein	N/A
COG	UHGV-0035141_56	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0035141_56	PF05113,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035141_57	1121866.AUGK01000003_gene1445	88.2	1.95e-16	N/A	N/A
PHROG	UHGV-0035141_60	phrog_21718	47.3	0.00000000000043	N/A	unknown function
eggNOG-mapper	UHGV-0035141_60	476272.RUMHYD_01768	56.2	0.0000000652	N/A	N/A
PHROG	UHGV-0035141_62	phrog_16490	55.6	7.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0035141_62	476272.RUMHYD_01770	53.1	0.00000768	N/A	N/A
structural_annotation	UHGV-0035141_63	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_65	phrog_297	56.0	7.5e-16	holin	lysis
UniRef90	UHGV-0035141_65	UniRef90_UPI0009F738EC	130.0	1.46e-37	phage holin	N/A
eggNOG-mapper	UHGV-0035141_65	445972.ANACOL_03382	103.0	5.77e-28	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0035141_65	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0035141_65	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0035141_65	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035141_65	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0035141_66	phrog_7854	111.4	7.70014e-42	endolysin	lysis
UniRef90	UHGV-0035141_66	UniRef90_UPI0013A63178	166.0	0	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-0035141_66	1235798.C817_01663	75.9	0.00000000000263	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0035141_66	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0035141_66	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0035141_66	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0035141_66	PF19127,PF05382,MF_00727,TIGR04035,NF033742,COG5263	N/A	N/A	N/A	N/A