UHGV-0035319 (vOTU-033619)

Viral Genome: UHGV-0035319

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0035319
vOTU ID	vOTU-033619
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_I_12_1518__NODE_1814_length_33122_cov_30.837494
Associated BioSample	SAMEA4765810
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9777
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.32
Jumbo phage	No

Genome content
Genome length (bp)	33,122
GC content	37.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	93%
Average CDS length (bps)	639.31
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0035319_1	phrog_478	96.0	2.3e-28	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0035319_1	UniRef90_A0A0J8Z1B9	162.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0035319_1	272623.L62008	75.5	0.00000000000000146	N/A	N/A
KOfam	UHGV-0035319_4	K03111	117.7	1.5e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0035319_4	phrog_44	133.7	1.2e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035319_4	UniRef90_UPI00189992A5	128.0	2.77e-35	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0035319_4	1278304.JAFR01000009_gene1227	122.0	1.16e-33	single-stranded DNA binding	N/A
Pfam	UHGV-0035319_4	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0035319_4	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0035319_4	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0035319_4	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0035319_4	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035319_7	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0035319_8	phrog_3675	92.3	2.9e-27	N/A	unknown function
UniRef90	UHGV-0035319_8	UniRef90_A0A3E2UCU7	100.0	1.97e-25	Dihydrolipoyl dehydrogenase	N/A
eggNOG-mapper	UHGV-0035319_8	585501.HMPREF6123_0838	95.9	1.47e-24	YjcQ protein	N/A
Pfam	UHGV-0035319_8	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0035319_8	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
KOfam	UHGV-0035319_9	K07171	42.6	0.000000000013	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0035319_9	phrog_1936	43.7	0.0000000000045	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0035319_9	UniRef90_UPI0013DF8249	80.9	1.09e-17	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0035319_9	706434.HMPREF9429_00535	73.2	0.00000000000000198	PemK-like, MazF-like toxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-0035319_9	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
structural_annotation	UHGV-0035319_9	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-0035319_10	phrog_1281	145.9	1.30321e-43	N/A	unknown function
UniRef90	UHGV-0035319_10	UniRef90_UPI00189B7989	140.0	8.84e-39	N/A	N/A
eggNOG-mapper	UHGV-0035319_10	428127.EUBDOL_01537	139.0	2.22e-39	N/A	N/A
Pfam	UHGV-0035319_10	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0035319_10	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035319_10	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0035319_14	phrog_19458	294.8	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035319_14	UniRef90_UPI0010565CFE	224.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0035319_14	657322.FPR_26770	291.0	0	N/A	N/A
COG	UHGV-0035319_14	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
eggNOG-mapper	UHGV-0035319_16	97139.C824_00678	85.1	5.4e-21	N/A	N/A
structural_annotation	UHGV-0035319_16	PF18358,NF037951	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035319_19	PF08962	N/A	N/A	N/A	N/A
KOfam	UHGV-0035319_21	K07451	48.6	0.00000000000013	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0035319_21	phrog_119	71.7	9.3e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035319_21	UniRef90_R5TPY3	73.6	0.0000000000000185	Phage related protein	N/A
eggNOG-mapper	UHGV-0035319_21	1235792.C808_00081	72.4	0.00000000000000898	HNH nucleases	N/A
COG	UHGV-0035319_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0035319_23	phrog_9	264.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0035319_23	UniRef90_W0FKV6	511.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0035319_23	1235792.C808_00083	475.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0035319_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0035319_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0035319_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0035319_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0035319_24	phrog_12	64.1	1.3e-19	portal protein	head and packaging
UniRef90	UHGV-0035319_24	UniRef90_UPI0001668EB1	199.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0035319_24	1415774.U728_1254	182.0	0	Phage portal protein	N/A
Pfam	UHGV-0035319_24	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0035319_24	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0035319_24	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0035319_25	K01358	130.9	1.2e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0035319_25	phrog_94	219.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0035319_25	UniRef90_UPI001E29EFE6	169.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0035319_25	1403313.AXBR01000002_gene4326	158.0	2.66247e-44	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0035319_25	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0035319_25	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0035319_25	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0035319_26	phrog_10	111.0	1e-32	major head protein	head and packaging
UniRef90	UHGV-0035319_26	UniRef90_A0A0F3FRY7	255.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0035319_26	864178.E2ELI5_9CAUD	246.0	0	peptidase activity	N/A
Pfam	UHGV-0035319_26	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0035319_26	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0035319_26	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0035319_27	phrog_749	57.2	2e-16	N/A	unknown function
UniRef90	UHGV-0035319_27	UniRef90_A0A396SIZ8	58.9	0.00000000463	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0035319_27	86416.Clopa_0342	63.9	0.00000000000955	N/A	N/A
PHROG	UHGV-0035319_31	phrog_88	133.3	1.5e-39	major tail protein	tail
UniRef90	UHGV-0035319_31	UniRef90_A6M958	115.0	5.97e-29	Putative major capsid protein	N/A
eggNOG-mapper	UHGV-0035319_31	447909.A6M958_9VIRU	115.0	1e-29	N/A	N/A
Pfam	UHGV-0035319_31	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0035319_31	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0035319_31	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0035319_33	K20282	63.2	9.8e-19	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0035319_33	phrog_1533	325.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0035319_33	UniRef90_A0A174LYQ1	242.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0035319_33	1235799.C818_04231	204.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0035319_33	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0035319_33	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0035319_33	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0035319_33	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0035319_34	phrog_33	62.5	9.8e-18	distal tail protein Dit	tail
UniRef90	UHGV-0035319_34	UniRef90_A0A1C6H6D2	139.0	7.14e-37	Phage-related protein	N/A
eggNOG-mapper	UHGV-0035319_34	1123263.AUKY01000068_gene490	189.0	0	tail component	N/A
COG	UHGV-0035319_34	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0035319_34	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0035319_35	K16628	116.8	8.8e-35	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0035319_35	phrog_5555	250.9	0	tail protein	tail
eggNOG-mapper	UHGV-0035319_35	428127.EUBDOL_01565	427.0	0	cellulase activity	N/A
Pfam	UHGV-0035319_35	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0035319_35	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0035319_35	PF21470	N/A	N/A	Minor structural protein 5-like, C-terminal domain	BppU-like_C
NCBIFam	UHGV-0035319_35	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0035319_35	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0035319_35	PF14594,PF00629,TIGR01665,NF033675,COG4926,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0035319_36	phrog_372	209.5	0	tail protein	tail
UniRef90	UHGV-0035319_36	UniRef90_A0A3N0HXV0	205.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0035319_36	556261.HMPREF0240_01282	179.0	0	N/A	N/A
Pfam	UHGV-0035319_36	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0035319_36	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0035319_36	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035319_37	PF10618	N/A	N/A	N/A	N/A
KOfam	UHGV-0035319_40	K07273	183.2	0	acm; lysozyme	N/A
PHROG	UHGV-0035319_40	phrog_291	185.6	0	endolysin	lysis
UniRef90	UHGV-0035319_40	UniRef90_UPI000414A751	348.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0035319_40	1123263.AUKY01000015_gene1625	348.0	0	lyzozyme M1	N/A
Pfam	UHGV-0035319_40	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0035319_40	PF01476	N/A	N/A	LysM domain	LysM
NCBIFam	UHGV-0035319_40	TIGR02899.1	N/A	N/A	SafA/ExsA family spore coat assembly protein	N/A
COG	UHGV-0035319_40	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0035319_40	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0035319_42	phrog_881	66.2	3.2e-19	holin	lysis
UniRef90	UHGV-0035319_42	UniRef90_O03978	62.4	0.0000000000254	Holin	N/A
eggNOG-mapper	UHGV-0035319_42	59241.E7DNC2_BPDP1	62.4	0.00000000000425	Pfam:Phage_holin_Dp1	N/A
Pfam	UHGV-0035319_42	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0035319_42	PF16938	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035319_43	1120971.AUCA01000043_gene1174	50.4	0.00000564	sigma factor activity	N/A
Pfam	UHGV-0035319_43	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0035319_43	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0035319_43	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0035319_45	phrog_22984	55.8	4.7e-16	N/A	unknown function
PHROG	UHGV-0035319_46	phrog_16490	67.7	2.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0035319_46	476272.RUMHYD_01770	76.6	0.0000000000000205	N/A	N/A
structural_annotation	UHGV-0035319_47	PF18573,NF033147	N/A	N/A	N/A	N/A
Pfam	UHGV-0035319_48	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin