UHGV-0035772 (vOTU-044477)

Viral Genome: UHGV-0035772

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0035772
vOTU ID	vOTU-044477
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_B_19_THA0061JZ__NODE_527_length_46399_cov_50.349618
Associated BioSample	SAMEA4969181
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9788
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.86
Jumbo phage	No

Genome content
Genome length (bp)	46,322
GC content	45.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	90%
Average CDS length (bps)	672.15
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0035772_1	1378168.N510_03079	56.2	0.000000265	N/A	N/A
structural_annotation	UHGV-0035772_2	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035772_7	UniRef90_A0A316S6W0	100.0	2.52e-26	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0035772_7	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0035772_7	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0035772_7	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035772_10	1392502.JNIO01000008_gene1280	226.0	0	N/A	N/A
structural_annotation	UHGV-0035772_10	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_11	phrog_918	101.4	4.3e-30	N/A	unknown function
UniRef90	UHGV-0035772_11	UniRef90_UPI000EC62F11	155.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035772_11	537007.BLAHAN_05515	142.0	2.69049e-43	N/A	N/A
Pfam	UHGV-0035772_11	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0035772_11	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_13	phrog_4105	80.5	1.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0035772_13	33035.JPJF01000043_gene996	75.5	4.93e-16	N/A	N/A
PHROG	UHGV-0035772_14	phrog_1141	63.8	2.6e-18	tail fiber protein	tail
UniRef90	UHGV-0035772_14	UniRef90_A0A1Q6R2G9	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035772_14	1286631.X805_38770	54.7	0.00000092	N/A	N/A
Pfam	UHGV-0035772_14	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0035772_14	PF14301	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035772_15	PF08948	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_16	phrog_1640	52.8	0.0000000000000072	tail protein	tail
eggNOG-mapper	UHGV-0035772_16	1115515.EV102420_06_00490	70.1	0.00000000186	N/A	N/A
structural_annotation	UHGV-0035772_16	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_17	phrog_9880	344.2	0	N/A	unknown function
UniRef90	UHGV-0035772_17	UniRef90_A0A1Q6RQR6	4524.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0035772_17	1123288.SOV_1c10750	180.0	2.72973e-42	N/A	N/A
Pfam	UHGV-0035772_17	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0035772_18	phrog_10475	45.2	0.0000000000005	endolysin	lysis
UniRef90	UHGV-0035772_18	UniRef90_A0A1Q6RQM5	1030.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0035772_18	1123288.SOV_2c10740	196.0	0	N/A	N/A
Pfam	UHGV-0035772_18	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-0035772_18	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_19	phrog_418	131.1	2.4e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0035772_19	568816.Acin_1826	103.0	1.5e-24	N/A	N/A
structural_annotation	UHGV-0035772_19	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_20	phrog_308	105.8	3.6e-31	internal virion protein	head and packaging
structural_annotation	UHGV-0035772_20	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_21	phrog_376	611.8	0	tail protein	tail
UniRef90	UHGV-0035772_21	UniRef90_A0A0U1KV93	358.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035772_21	568816.Acin_1828	671.0	0	N/A	N/A
structural_annotation	UHGV-0035772_21	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_22	phrog_394	157.7	0	tail protein	tail
UniRef90	UHGV-0035772_22	UniRef90_A0A0U1KW64	125.0	9.16e-33	N/A	N/A
eggNOG-mapper	UHGV-0035772_22	1123288.SOV_1c10710	125.0	1.54e-33	N/A	N/A
structural_annotation	UHGV-0035772_22	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_23	phrog_427	67.9	1.5e-19	N/A	unknown function
structural_annotation	UHGV-0035772_23	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_24	phrog_212	201.7	0	major head protein	head and packaging
UniRef90	UHGV-0035772_24	UniRef90_A0A6J5KPX9	214.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0035772_24	568816.Acin_1831	350.0	0	N/A	N/A
Pfam	UHGV-0035772_24	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0035772_24	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_25	phrog_458	150.8	1.12104e-44	protease	other
eggNOG-mapper	UHGV-0035772_25	568816.Acin_1832	97.8	2.6e-22	N/A	N/A
PHROG	UHGV-0035772_26	phrog_528	105.3	2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0035772_26	1401067.HMPREF0872_06805	93.2	6.81e-23	N/A	N/A
PHROG	UHGV-0035772_27	phrog_332	439.3	0	head-tail adaptor	connector
UniRef90	UHGV-0035772_27	UniRef90_UPI001F3F9DD9	550.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0035772_27	568816.Acin_1834	605.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0035772_27	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0035772_27	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0035772_29	K06909	85.7	5.8e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0035772_29	phrog_2	159.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0035772_29	UniRef90_UPI001D00EC11	406.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0035772_29	568816.Acin_1836	421.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-0035772_29	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0035772_29	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
UniRef90	UHGV-0035772_31	UniRef90_UPI00103300F2	73.9	0.00000000000000135	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0035772_31	1050201.KB913034_gene791	53.9	0.0000000222	N/A	N/A
structural_annotation	UHGV-0035772_31	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_32	phrog_15863	289.9	0	N/A	unknown function
UniRef90	UHGV-0035772_32	UniRef90_R6WLL6	600.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-0035772_32	693746.OBV_01780	125.0	3.02e-32	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0035772_32	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-0035772_38	K03111	55.7	0.0000000000000014	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0035772_38	phrog_44	59.1	1.3e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035772_38	UniRef90_R6WGR4	252.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0035772_38	546268.NEISUBOT_05135	65.9	0.00000000000549	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0035772_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0035772_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0035772_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0035772_38	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0035772_39	K01160	59.3	1.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0035772_39	phrog_140	133.7	9.7e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035772_39	UniRef90_A0A316S9J1	146.0	2.14959e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0035772_39	743719.PaelaDRAFT_5642	125.0	6.27e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0035772_39	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0035772_39	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0035772_39	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_43	phrog_1454	49.2	0.000000000000093	N/A	unknown function
eggNOG-mapper	UHGV-0035772_43	1227360.C176_12478	48.9	0.00000112	N/A	N/A
PHROG	UHGV-0035772_50	phrog_4880	143.9	1.10002e-42	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035772_50	UniRef90_R6WTP4	477.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-0035772_50	1178540.BA70_18625	131.0	1.07e-33	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0035772_50	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0035772_50	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0035772_50	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0035772_50	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0035772_51	K07455	202.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0035772_51	phrog_148	212.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035772_51	UniRef90_R6XVK6	362.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-0035772_51	218284.CCDN010000001_gene901	204.0	0	RecT family	N/A
Pfam	UHGV-0035772_51	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0035772_51	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0035772_51	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0035772_51	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035772_53	UniRef90_R6WLK2	127.0	1.04e-36	Conserved domain protein	N/A
Pfam	UHGV-0035772_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0035772_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0035772_53	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_54	phrog_434	329.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035772_54	UniRef90_R6WGP6	597.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0035772_54	706434.HMPREF9429_00551	357.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0035772_54	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0035772_54	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0035772_54	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0035772_54	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_56	phrog_14367	54.2	0.000000000000001	N/A	unknown function
UniRef90	UHGV-0035772_56	UniRef90_R6WTN1	172.0	0	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-0035772_56	397291.C804_02419	50.1	0.00000312	LysM domain	N/A
Pfam	UHGV-0035772_56	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0035772_56	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0035772_56	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035772_57	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-0035772_58	phrog_6058	77.3	1.2e-22	N/A	unknown function
UniRef90	UHGV-0035772_58	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0035772_58	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-0035772_58	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0035772_60	K18830	60.6	3.8e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0035772_60	phrog_8	48.0	0.00000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035772_60	UniRef90_R6X1Y8	176.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0035772_60	641107.CDLVIII_1309	87.8	8.7e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0035772_60	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0035772_60	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0035772_60	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0035772_62	K14059	132.8	4.7e-39	int; integrase	N/A
PHROG	UHGV-0035772_62	phrog_1	145.2	6.19374e-43	integrase	integration and excision
UniRef90	UHGV-0035772_62	UniRef90_R6X1Y3	609.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0035772_62	1123250.KB908381_gene1631	330.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0035772_62	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035772_62	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0035772_62	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A