UHGV-0036063 (vOTU-082631)

Viral Genome: UHGV-0036063

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0036063
vOTU ID	vOTU-082631
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_6_1527__NODE_1621_length_38618_cov_10.851301
Associated BioSample	SAMEA4765818
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.76 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9768
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.04
Jumbo phage	No

Genome content
Genome length (bp)	38,618
GC content	33.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	89%
Average CDS length (bps)	564.54
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0036063_1	K18843	73.3	2.7e-21	hicB; antitoxin HicB	N/A
PHROG	UHGV-0036063_1	phrog_497	54.1	0.0000000000000015	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0036063_1	UniRef90_UPI00195C9D59	91.3	1.37e-20	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0036063_1	397290.C810_04356	87.8	5.01e-20	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0036063_1	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0036063_1	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
PHROG	UHGV-0036063_2	phrog_30113	260.0	0	N/A	unknown function
UniRef90	UHGV-0036063_2	UniRef90_UPI0019611274	321.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036063_2	585501.HMPREF6123_0869	252.0	0	N/A	N/A
Pfam	UHGV-0036063_2	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-0036063_2	PF01351,MF_00052_A,TIGR00729,COG1039	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_3	phrog_37604	94.0	1.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0036063_3	457412.RSAG_01109	81.6	6.15e-18	N/A	N/A
PHROG	UHGV-0036063_4	phrog_881	65.7	4.8e-19	holin	lysis
UniRef90	UHGV-0036063_4	UniRef90_UPI001A9A8803	73.9	7.78e-16	phage holin	N/A
eggNOG-mapper	UHGV-0036063_4	1321782.HMPREF1986_02282	69.3	0.00000000000000791	Putative phage holin Dp-1	N/A
Pfam	UHGV-0036063_4	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0036063_4	PF16938,COG3237	N/A	N/A	N/A	N/A
KOfam	UHGV-0036063_5	K01447	58.4	1.2e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0036063_5	phrog_7698	159.5	0	endolysin	lysis
UniRef90	UHGV-0036063_5	UniRef90_UPI00037C6474	179.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0036063_5	1033733.CAEK01000007_gene1632	197.0	0	Bacterial SH3 domain	N/A
Pfam	UHGV-0036063_5	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0036063_5	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
eggNOG-mapper	UHGV-0036063_9	1304866.K413DRAFT_0769	74.7	0.0000000000000138	N/A	N/A
PHROG	UHGV-0036063_10	phrog_18725	58.3	1.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0036063_10	411902.CLOBOL_00123	149.0	1.12104e-44	N/A	N/A
PHROG	UHGV-0036063_11	phrog_13879	191.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0036063_11	411902.CLOBOL_00124	580.0	0	N/A	N/A
structural_annotation	UHGV-0036063_11	PF14594,PF21114,MF_00813,NF033848,TIGR02961,COG4379,COG4266	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_12	phrog_1194	60.8	2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0036063_12	411902.CLOBOL_00125	122.0	3.86e-34	N/A	N/A
structural_annotation	UHGV-0036063_12	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0036063_13	K10421	40.9	0.0000000000076	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0036063_13	phrog_1535	118.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0036063_13	UniRef90_A0A1C6CG40	165.0	3.74e-38	Phage-related protein	N/A
eggNOG-mapper	UHGV-0036063_13	1120746.CCNL01000014_gene2105	172.0	5.40999e-41	tape measure	N/A
COG	UHGV-0036063_13	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036063_13	PF11172	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_14	phrog_706	128.0	6.5e-38	N/A	unknown function
UniRef90	UHGV-0036063_14	UniRef90_A0A0F0CE18	208.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0036063_14	411902.CLOBOL_00127	207.0	0	N/A	N/A
Pfam	UHGV-0036063_14	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0036063_14	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_15	phrog_11299	87.4	1.5e-25	N/A	unknown function
structural_annotation	UHGV-0036063_15	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_16	phrog_3099	130.8	8.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-0036063_16	411902.CLOBOL_00129	166.0	0	N/A	N/A
structural_annotation	UHGV-0036063_16	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_17	phrog_3266	51.6	0.000000000000014	tail completion	connector
eggNOG-mapper	UHGV-0036063_17	1449050.JNLE01000003_gene3885	99.0	1.94e-24	N/A	N/A
structural_annotation	UHGV-0036063_17	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_18	phrog_556	103.9	1.1e-31	minor head protein	head and packaging
UniRef90	UHGV-0036063_18	UniRef90_UPI000691B8FF	138.0	6.07e-39	minor capsid protein	N/A
eggNOG-mapper	UHGV-0036063_18	1449050.JNLE01000003_gene3886	138.0	1.02e-39	N/A	N/A
Pfam	UHGV-0036063_18	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0036063_18	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036063_19	1449050.JNLE01000003_gene3887	52.0	0.000000704	N/A	N/A
structural_annotation	UHGV-0036063_19	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_20	phrog_541	68.5	8e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0036063_20	1449050.JNLE01000003_gene3888	65.5	0.00000000000727	N/A	N/A
PHROG	UHGV-0036063_22	phrog_422	223.4	0	major head protein	head and packaging
UniRef90	UHGV-0036063_22	UniRef90_W0U896	258.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0036063_22	1125725.HMPREF1325_1332	263.0	0	N/A	N/A
structural_annotation	UHGV-0036063_22	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_23	phrog_194	94.1	1.8e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-0036063_23	UniRef90_R6WG39	131.0	1.98e-35	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0036063_23	658655.HMPREF0988_02561	125.0	6e-34	Phage minor structural protein GP20	N/A
Pfam	UHGV-0036063_23	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0036063_25	phrog_581	300.1	0	minor head protein	head and packaging
UniRef90	UHGV-0036063_25	UniRef90_UPI00138F9ED1	356.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0036063_25	1449050.JNLE01000003_gene3892	343.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0036063_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0036063_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036063_25	PF06152,PF18825	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_26	phrog_533	297.6	0	portal protein	head and packaging
UniRef90	UHGV-0036063_26	UniRef90_A0A3P1S3R5	442.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0036063_26	411470.RUMGNA_02212	404.0	0	N/A	N/A
structural_annotation	UHGV-0036063_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0036063_27	K06909	389.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0036063_27	phrog_3717	141.4	4.1002e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0036063_27	UniRef90_A0A3P1S603	653.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0036063_27	411461.DORFOR_01162	526.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0036063_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0036063_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0036063_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0036063_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0036063_27	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_28	phrog_9479	127.6	8.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0036063_28	511680.BUTYVIB_01226	62.0	0.000000000176	N/A	N/A
structural_annotation	UHGV-0036063_28	PF15529	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036063_29	PF10819	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_30	phrog_940	368.1	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036063_30	UniRef90_UPI0009327623	452.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036063_30	1232449.BAHV02000018_gene1534	320.0	0	N/A	N/A
PADLOC	UHGV-0036063_30	MTase_II_00015	136.5	2.6e-40	Type II methyltransferase	RM
Pfam	UHGV-0036063_30	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0036063_30	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0036063_30	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0036063_30	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_31	phrog_4085	62.4	6.5e-18	N/A	unknown function
UniRef90	UHGV-0036063_31	UniRef90_UPI0008CAA62E	93.6	1.28e-23	N/A	N/A
eggNOG-mapper	UHGV-0036063_31	679192.HMPREF9013_0987	93.2	3.06e-24	N/A	N/A
Pfam	UHGV-0036063_31	PF19807	N/A	N/A	N/A	DUF6290
KOfam	UHGV-0036063_33	K03111	93.4	4.1e-27	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0036063_33	phrog_44	95.1	9.3e-28	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036063_33	UniRef90_UPI001431667E	98.2	3.84e-23	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0036063_33	334390.LAF_0669	89.7	1.94e-20	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0036063_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0036063_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0036063_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0036063_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0036063_33	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_35	phrog_236	103.8	2.9e-30	nucleotide kinase	other
UniRef90	UHGV-0036063_35	UniRef90_A0A6B4UVZ1	95.9	1.76e-24	N/A	N/A
eggNOG-mapper	UHGV-0036063_35	673376.F2VHW0_9CAUD	92.4	2.76e-23	N/A	N/A
Pfam	UHGV-0036063_35	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0036063_37	phrog_2715	130.0	1.2e-38	N/A	unknown function
eggNOG-mapper	UHGV-0036063_37	642492.Clole_0950	136.0	3.64e-39	N/A	N/A
structural_annotation	UHGV-0036063_37	PF18406	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_39	phrog_22292	45.7	0.00000000000097	N/A	unknown function
PHROG	UHGV-0036063_42	phrog_5810	67.8	1.2e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036063_42	UniRef90_A0A417QFV0	162.0	8.40779e-45	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0036063_42	1094508.Tsac_2440	115.0	2.95e-27	N/A	N/A
structural_annotation	UHGV-0036063_42	PF10771,NF041413,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_43	phrog_1770	75.1	1e-21	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0036063_43	536233.CLO_1822	190.0	0	N/A	N/A
structural_annotation	UHGV-0036063_43	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0036063_44	K07455	191.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0036063_44	phrog_148	208.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036063_44	UniRef90_A0A7V8A6Q1	266.0	0	Recombinase phage RecT family	N/A
eggNOG-mapper	UHGV-0036063_44	428127.EUBDOL_01509	242.0	0	RecT family	N/A
Pfam	UHGV-0036063_44	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0036063_44	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0036063_44	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0036063_44	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_45	phrog_750	50.2	0.000000000000038	N/A	unknown function
structural_annotation	UHGV-0036063_45	PF13835,NF040858	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_47	phrog_434	290.2	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036063_47	UniRef90_UPI0003F5EC8F	290.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0036063_47	1123263.AUKY01000072_gene2104	290.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0036063_47	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0036063_47	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0036063_47	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0036063_47	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036063_50	1120978.KB894087_gene426	71.6	0.0000000000000418	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0036063_50	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
Pfam	UHGV-0036063_51	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0036063_51	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
PHROG	UHGV-0036063_54	phrog_582	45.9	0.0000000000011	Arc-like repressor	transcription regulation
Pfam	UHGV-0036063_54	PF05534	N/A	N/A	HicB family	HicB
Pfam	UHGV-0036063_55	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
structural_annotation	UHGV-0036063_55	PF03869,NF041793,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036063_57	UniRef90_A0A844FW14	93.6	6.4e-24	Helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0036063_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0036063_57	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036063_58	UniRef90_A0A844FW05	136.0	2.28e-40	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0036063_58	1280698.AUJS01000084_gene2429	51.2	0.00000124	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0036063_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036063_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0036063_58	PF13560,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_59	phrog_9243	77.4	1.8e-22	N/A	unknown function
UniRef90	UHGV-0036063_59	UniRef90_UPI000E51D1BE	205.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036063_59	1216362.B437_08683	96.7	9.97e-22	N/A	N/A
Pfam	UHGV-0036063_59	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-0036063_59	MF_00052_A,NF011119	N/A	N/A	N/A	N/A
PHROG	UHGV-0036063_60	phrog_2158	47.0	0.0000000000003	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0036063_60	UniRef90_A0A7X2N3V1	184.0	0	Abi family protein	N/A
structural_annotation	UHGV-0036063_60	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0036063_61	K14059	131.6	1.1e-38	int; integrase	N/A
PHROG	UHGV-0036063_61	phrog_1	143.6	1.69978e-42	integrase	integration and excision
UniRef90	UHGV-0036063_61	UniRef90_UPI00189AE8E1	189.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0036063_61	469596.HMPREF9488_02322	85.1	0.0000000000000024	Phage integrase family	N/A
Pfam	UHGV-0036063_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0036063_61	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0036063_61	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A