UHGV-0036205 (vOTU-082201)

Viral Genome: UHGV-0036205

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0036205
vOTU ID	vOTU-082201
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_20_1180__NODE_1896_length_50510_cov_5.465350
Associated BioSample	SAMEA4765639
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9576
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - plasmid or chromosomal
viralVerify score	5.58
Jumbo phage	No

Genome content
Genome length (bp)	50,510
GC content	26.67%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	93%
Average CDS length (bps)	654.04
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0036205_3	K01537	796.5	0	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]	N/A
PHROG	UHGV-0036205_3	phrog_12316	478.8	0	ATPase	other
UniRef90	UHGV-0036205_3	UniRef90_R7MF69	1174.0	0	P-type Ca(2+) transporter	N/A
eggNOG-mapper	UHGV-0036205_3	1507.HMPREF0262_01502	714.0	0	Cation transporter/ATPase, N-terminus	N/A
Pfam	UHGV-0036205_3	PF00690	N/A	N/A	Cation transporter/ATPase, N-terminus	Cation_ATPase_N
Pfam	UHGV-0036205_3	PF00122	N/A	N/A	E1-E2 ATPase	E1-E2_ATPase
Pfam	UHGV-0036205_3	PF00702	N/A	N/A	haloacid dehalogenase-like hydrolase	Hydrolase
Pfam	UHGV-0036205_3	PF00689	N/A	N/A	Cation transporting ATPase, C-terminus	Cation_ATPase_C
NCBIFam	UHGV-0036205_3	TIGR01517.1	N/A	N/A	calcium-translocating P-type ATPase, PMCA-type	N/A
COG	UHGV-0036205_3	COG0474	N/A	N/A	Magnesium-transporting ATPase (P-type)	N/A
structural_annotation	UHGV-0036205_3	PF00122,PF00689,PF00702,MF_00285,TIGR01522,COG0474	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036205_4	553973.CLOHYLEM_06959	63.9	0.0000000000989	N/A	N/A
KOfam	UHGV-0036205_7	K06131	51.5	0.000000000000012	clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]	N/A
UniRef90	UHGV-0036205_7	UniRef90_R5TSR0	94.4	3.33e-21	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-0036205_7	420890.LCGL_0584	79.7	0.00000000000000102	Putative ABC-transporter type IV	N/A
Pfam	UHGV-0036205_7	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-0036205_7	COG4905	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036205_8	UniRef90_A0A356K4W4	134.0	1.36e-37	Thioredoxin domain-containing protein	N/A
Pfam	UHGV-0036205_8	PF00085	N/A	N/A	Thioredoxin	Thioredoxin
KOfam	UHGV-0036205_10	K07459	156.3	0	ybjD; putative ATP-dependent endonuclease of the OLD family	N/A
PHROG	UHGV-0036205_10	phrog_4747	98.9	3.2e-30	N/A	unknown function
UniRef90	UHGV-0036205_10	UniRef90_A0A0J8Z0T0	377.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0036205_10	445973.CLOBAR_01467	323.0	0	AAA ATPase domain	N/A
PADLOC	UHGV-0036205_10	AAA_15	80.1	1e-22	N/A	N/A
Pfam	UHGV-0036205_10	PF13175	N/A	N/A	AAA ATPase domain	AAA_15
Pfam	UHGV-0036205_10	PF20469	N/A	N/A	Overcoming lysogenization defect protein-like, TOPRIM domain	OLD-like_TOPRIM
COG	UHGV-0036205_10	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0036205_10	PF13175,TIGR04435,COG3593	N/A	N/A	N/A	N/A
KOfam	UHGV-0036205_11	K06223	287.0	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0036205_11	phrog_56	257.9	0	DNA methyltransferase	other
UniRef90	UHGV-0036205_11	UniRef90_R6Y7E4	542.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0036205_11	1188233.MAU_2420	328.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
PADLOC	UHGV-0036205_11	MTase_II_00080	325.3	0	Type II methyltransferase	RM
Pfam	UHGV-0036205_11	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-0036205_11	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
COG	UHGV-0036205_11	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0036205_11	PF02086,MF_01872,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0036205_12	K22409	58.9	9e-17	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0036205_12	phrog_1274	45.4	0.0000000000014	lysM motif protein	lysis
UniRef90	UHGV-0036205_12	UniRef90_R7MF64	185.0	0	Peptidoglycan-binding lysin domain-containing protein	N/A
eggNOG-mapper	UHGV-0036205_12	1004785.AMBLS11_11345	62.0	0.000000000997	COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	N/A
Pfam	UHGV-0036205_12	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0036205_12	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
UniRef90	UHGV-0036205_13	UniRef90_R5A4F3	333.0	0	N/A	N/A
KOfam	UHGV-0036205_14	K14059	199.0	0	int; integrase	N/A
PHROG	UHGV-0036205_14	phrog_1	190.5	0	integrase	integration and excision
UniRef90	UHGV-0036205_14	UniRef90_A0A7X7ASP9	327.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0036205_14	1204534.J9QD18_9CAUD	169.0	0	Phage integrase family	N/A
Pfam	UHGV-0036205_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
structural_annotation	UHGV-0036205_14	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036205_16	UniRef90_R5AAT8	156.0	0	Peptidase_M78 domain-containing protein	N/A
Pfam	UHGV-0036205_16	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0036205_16	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036205_17	UniRef90_R5A425	222.0	0	DNA-binding helix-turn-helix protein	N/A
structural_annotation	UHGV-0036205_17	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036205_18	UniRef90_R5A161	146.0	1.82169e-44	Helix-turn-helix domain protein	N/A
COG	UHGV-0036205_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0036205_18	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0036205_21	phrog_35156	44.0	0.000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0036205_21	927704.SELR_18440	70.1	0.00000000002	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
COG	UHGV-0036205_21	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0036205_21	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0036205_24	phrog_155	124.9	6.2e-37	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036205_24	UniRef90_A0A3B8SWQ8	249.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0036205_24	357809.Cphy_2988	205.0	0	ERF superfamily	N/A
Pfam	UHGV-0036205_24	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0036205_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0036205_24	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0036205_25	phrog_6244	86.1	4.9e-25	N/A	unknown function
UniRef90	UHGV-0036205_25	UniRef90_A0A7W3SYY9	57.0	0.0000000213	Putative phage-related endonuclease	N/A
eggNOG-mapper	UHGV-0036205_25	1399942.U3PIX9_9CAUD	79.7	5.01e-18	N/A	N/A
structural_annotation	UHGV-0036205_25	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0036205_26	phrog_298	59.6	1.8e-17	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036205_26	UniRef90_A0A843HPP6	163.0	0	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0036205_26	1399942.U3PDT7_9CAUD	245.0	0	nuclease activity	N/A
structural_annotation	UHGV-0036205_26	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0036205_27	phrog_72	64.6	1.8e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0036205_27	1304866.K413DRAFT_1197	60.5	0.00000000287	N/A	N/A
structural_annotation	UHGV-0036205_27	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-0036205_29	K03111	110.7	2.1e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0036205_29	phrog_44	117.6	1.2e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036205_29	UniRef90_A0A350H2L8	181.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0036205_29	345219.Bcoa_1304	118.0	1.32e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0036205_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0036205_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0036205_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0036205_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0036205_29	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036205_32	PF20384,COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0036205_33	phrog_478	132.4	1.5e-39	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-0036205_33	324057.Pjdr2_1537	110.0	1.6e-29	N/A	N/A
structural_annotation	UHGV-0036205_34	NF038044	N/A	N/A	N/A	N/A
PHROG	UHGV-0036205_40	phrog_1238	41.4	0.000000000022	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0036205_40	1120936.KB907208_gene1181	53.5	0.000000206	N/A	N/A
structural_annotation	UHGV-0036205_40	TIGR01689	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036205_42	PF09190	N/A	N/A	N/A	N/A
PHROG	UHGV-0036205_44	phrog_625	69.9	2.7e-20	N/A	unknown function
UniRef90	UHGV-0036205_44	UniRef90_A0A3E3EHP8	114.0	6.75e-31	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0036205_44	397290.C810_01502	108.0	4.33e-29	N/A	N/A
structural_annotation	UHGV-0036205_44	PF12961,NF002008,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-0036205_45	phrog_11947	47.8	0.00000000000022	N/A	unknown function
structural_annotation	UHGV-0036205_46	PF10654	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036205_48	PF15456	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036205_49	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0036205_50	K06909	146.3	2.60642e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0036205_50	phrog_979	156.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0036205_50	UniRef90_A0A0M2NDA4	542.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0036205_50	1232449.BAHV02000016_gene1824	547.0	0	N/A	N/A
Pfam	UHGV-0036205_50	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0036205_50	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0036205_50	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036205_53	445971.ANASTE_00716	382.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036205_55	1125712.HMPREF1316_2145	71.2	0.0000000000451	N/A	N/A
structural_annotation	UHGV-0036205_55	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0036205_57	phrog_13046	46.4	0.00000000000049	N/A	unknown function
structural_annotation	UHGV-0036205_57	PF20387	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036205_58	UniRef90_UPI001407F823	138.0	4.18e-31	N/A	N/A
eggNOG-mapper	UHGV-0036205_58	1408437.JNJN01000002_gene1390	176.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-0036205_58	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036205_60	871968.DESME_08840	195.0	0	N/A	N/A
PHROG	UHGV-0036205_61	phrog_21973	175.6	0	tail protein	tail
eggNOG-mapper	UHGV-0036205_61	1391188.A0A068EMP3_9CAUD	157.0	5.22e-39	N/A	N/A
PHROG	UHGV-0036205_62	phrog_372	150.7	1.12104e-44	tail protein	tail
UniRef90	UHGV-0036205_62	UniRef90_UPI0002BB22B5	72.8	0.000000000692	N/A	N/A
eggNOG-mapper	UHGV-0036205_62	1211844.CBLM010000016_gene1479	68.9	0.00000000145	N/A	N/A
Pfam	UHGV-0036205_62	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0036205_62	PF05895,MF_04116,NF010681,COG3291,COG2967	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036205_69	UniRef90_R7MHG2	75.5	0.00000000000069	Peptidoglycan DL-endopeptidase CwlO	N/A
eggNOG-mapper	UHGV-0036205_69	479434.Sthe_0142	57.4	0.000000666	SMART Peptidoglycan-binding LysM	N/A
Pfam	UHGV-0036205_69	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0036205_69	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0036205_70	phrog_7566	54.5	0.000000000000002	N/A	unknown function
UniRef90	UHGV-0036205_70	UniRef90_UPI000E542A38	69.7	0.000000000000935	phosphoenolpyruvate carboxykinase	N/A
KOfam	UHGV-0036205_71	K00973	51.0	0.000000000000019	rfbA, rmlA, rffH; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]	N/A
UniRef90	UHGV-0036205_71	UniRef90_R6C2S5	422.0	0	NTP_transferase domain-containing protein	N/A
eggNOG-mapper	UHGV-0036205_71	1410628.JNKS01000003_gene1893	300.0	0	Nucleotidyl transferase	N/A
Pfam	UHGV-0036205_71	PF00483	N/A	N/A	Nucleotidyl transferase	NTP_transferase
COG	UHGV-0036205_71	COG1209	N/A	N/A	dTDP-glucose pyrophosphorylase	N/A
structural_annotation	UHGV-0036205_71	PF00483,MF_01631,NF041313,COG1209	N/A	N/A	N/A	N/A