UHGV-0036300 (vOTU-150154)

Viral Genome: UHGV-0036300

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0036300
vOTU ID	vOTU-150154
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_D_17_CHE1007SZ__NODE_3740_length_23808_cov_117.465425
Associated BioSample	SAMEA4969130
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.72 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.11
Jumbo phage	No

Genome content
Genome length (bp)	23,808
GC content	58.38%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	90%
Average CDS length (bps)	489.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0036300_1	phrog_88	82.2	6.5e-24	major tail protein	tail
UniRef90	UHGV-0036300_1	UniRef90_S0FUN2	114.0	9.12e-29	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0036300_1	1195236.CTER_5106	114.0	1.53e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0036300_1	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0036300_1	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036300_1	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036300_2	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0036300_3	phrog_33680	151.7	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0036300_3	UniRef90_A0A1M6L1P7	264.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0036300_3	1195236.CTER_5104	250.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0036300_3	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0036300_3	PF11570,PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0036300_4	phrog_37549	48.6	1.9e-22	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0036300_4	1195236.CTER_5103	98.6	2.51e-18	N/A	N/A
PHROG	UHGV-0036300_5	phrog_26795	111.0	3.1e-39	N/A	unknown function
UniRef90	UHGV-0036300_5	UniRef90_A0A5J6T4K8	161.0	2.95954e-42	Minor tail protein	N/A
eggNOG-mapper	UHGV-0036300_5	1161901.I1TLF3_9CAUD	168.0	0	N/A	N/A
structural_annotation	UHGV-0036300_5	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0036300_6	phrog_12764	41.8	0.000000000014	N/A	unknown function
structural_annotation	UHGV-0036300_6	PF01176,MF_00085,TIGR00523,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036300_7	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0036300_9	phrog_10898	285.2	0	N/A	unknown function
UniRef90	UHGV-0036300_9	UniRef90_A0A7U3NJT3	189.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0036300_9	717606.PaecuDRAFT_2136	68.9	0.000000000113	S-layer homology domain	N/A
COG	UHGV-0036300_9	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-0036300_9	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036300_10	PF16408,NF033510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036300_11	1519439.JPJG01000060_gene1892	54.7	0.000000257	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0036300_11	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0036300_12	phrog_10993	93.4	2.1e-27	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0036300_12	UniRef90_UPI000834AF98	122.0	1.16e-29	N/A	N/A
eggNOG-mapper	UHGV-0036300_12	718252.FP2_16970	85.1	4.02e-16	N/A	N/A
Pfam	UHGV-0036300_12	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0036300_12	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036300_14	1519439.JPJG01000060_gene1895	129.0	2.72e-35	N/A	N/A
structural_annotation	UHGV-0036300_14	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0036300_18	phrog_6918	95.2	4.2e-28	holin	lysis
UniRef90	UHGV-0036300_18	UniRef90_A0A316QCY7	102.0	3.48e-26	Holin	N/A
eggNOG-mapper	UHGV-0036300_18	1297617.JPJD01000020_gene301	100.0	2.43e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0036300_18	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0036300_18	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0036300_19	phrog_14030	137.7	7.09996e-41	N/A	unknown function
UniRef90	UHGV-0036300_19	UniRef90_R6LL81	237.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0036300_19	1410624.JNKK01000008_gene1745	109.0	2.83e-25	repeat protein	N/A
COG	UHGV-0036300_19	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
eggNOG-mapper	UHGV-0036300_20	1160721.RBI_I00206	52.0	0.0000000396	N/A	N/A
structural_annotation	UHGV-0036300_20	PF10723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036300_24	UniRef90_A0A7M1RS47	70.9	0.00000000000135	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0036300_24	1378168.N510_03079	67.4	0.0000000000278	N/A	N/A
KOfam	UHGV-0036300_25	K06400	253.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0036300_25	phrog_95	264.7	0	integrase	integration and excision
UniRef90	UHGV-0036300_25	UniRef90_G9YSD9	420.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0036300_25	1408437.JNJN01000002_gene1420	405.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0036300_25	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0036300_25	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0036300_25	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0036300_25	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0036300_25	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-0036300_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0036300_26	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0036300_27	K02342	190.4	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0036300_27	phrog_192	168.8	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036300_27	UniRef90_UPI001897CA3A	338.0	0	exonuclease	N/A
eggNOG-mapper	UHGV-0036300_27	1437608.BBIA_1844	281.0	0	Exonuclease, DNA polymerase III, epsilon subunit family	N/A
PADLOC	UHGV-0036300_27	cd06127	145.7	3.60134e-43	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0036300_27	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0036300_27	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0036300_27	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0036300_27	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0036300_27	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
KOfam	UHGV-0036300_28	K22300	49.6	0.000000000000088	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0036300_28	phrog_2967	44.4	0.0000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0036300_28	UniRef90_UPI001EDCF802	108.0	8.11e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0036300_28	748224.HMPREF9436_01444	104.0	7.77e-27	N/A	N/A
Pfam	UHGV-0036300_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036300_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0036300_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036300_36	642492.Clole_0961	76.3	1.96e-17	N/A	N/A
structural_annotation	UHGV-0036300_36	PF12286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036300_37	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036300_39	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036300_40	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-0036300_44	K00558	163.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0036300_44	phrog_363	250.5	0	DNA methyltransferase	other
UniRef90	UHGV-0036300_44	UniRef90_G4KRB8	347.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0036300_44	693746.OBV_01900	347.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0036300_44	MTase_II_00058	121.0	1.5e-35	Type II methyltransferase	RM
Pfam	UHGV-0036300_44	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0036300_44	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0036300_44	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0036300_44	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A