UHGV-0036844 (vOTU-080490)

Viral Genome: UHGV-0036844

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0036844
vOTU ID	vOTU-080490
Representative Genome?	Yes
Source	GPD
Original genome ID	ivig_2051
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.02 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.73
Jumbo phage	No

Genome content
Genome length (bp)	38,739
GC content	40.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	96%
Average CDS length (bps)	747.60
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.02)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0036844_1	K14059	121.8	8.5e-36	int; integrase	N/A
PHROG	UHGV-0036844_1	phrog_1	131.9	6.1e-39	integrase	integration and excision
UniRef90	UHGV-0036844_1	UniRef90_A0A416Z2R8	748.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0036844_1	585394.RHOM_14030	413.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0036844_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0036844_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0036844_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036844_2	UniRef90_A0A3R6Q4V1	387.0	0	YHYH domain-containing protein	N/A
eggNOG-mapper	UHGV-0036844_2	756499.Desde_3141	63.9	0.000000002	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0036844_2	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0036844_2	COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036844_3	UniRef90_A0A3R6QMJ7	96.3	2.75e-25	XRE family transcriptional regulator	N/A
Pfam	UHGV-0036844_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036844_3	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0036844_3	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0036844_5	K18830	71.5	1.7e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0036844_5	phrog_2967	59.2	7.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0036844_5	UniRef90_A0A3R6UL37	228.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0036844_5	445972.ANACOL_03315	124.0	2.45e-35	N/A	N/A
Pfam	UHGV-0036844_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036844_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0036844_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0036844_8	phrog_6058	43.1	0.0000000000046	N/A	unknown function
UniRef90	UHGV-0036844_8	UniRef90_A0A416Z3U8	131.0	9.46e-39	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0036844_8	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0036844_12	phrog_3584	158.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0036844_12	1235800.C819_02258	270.0	0	N/A	N/A
structural_annotation	UHGV-0036844_12	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0036844_13	K03469	62.2	1.1e-17	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0036844_13	phrog_531	41.4	0.000000000019	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036844_13	UniRef90_A0A416Z2U3	311.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0036844_13	1547445.LO80_09595	73.2	0.0000000000000262	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0036844_13	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0036844_13	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0036844_13	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0036844_14	phrog_7370	47.9	0.000000000000069	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036844_14	UniRef90_UPI00164A90AD	137.0	9.94e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0036844_14	1235800.C819_02254	109.0	3.13e-29	HNH nucleases	N/A
eggNOG-mapper	UHGV-0036844_15	742740.HMPREF9474_04313	49.3	0.00000255	N/A	N/A
PHROG	UHGV-0036844_16	phrog_20593	43.2	0.0000000000054	N/A	unknown function
UniRef90	UHGV-0036844_16	UniRef90_A0A3R6QEJ7	83.6	4.62e-18	N/A	N/A
eggNOG-mapper	UHGV-0036844_16	658655.HMPREF0988_00866	86.3	2.02e-20	N/A	N/A
PHROG	UHGV-0036844_18	phrog_986	83.2	2.7e-24	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036844_18	UniRef90_A0A416Z2U8	158.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036844_18	1204534.J9QD24_9CAUD	69.7	0.00000000000000786	N/A	N/A
Pfam	UHGV-0036844_18	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0036844_18	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036844_21	1117958.PE143B_0129235	50.1	0.000000697	N/A	N/A
eggNOG-mapper	UHGV-0036844_23	411902.CLOBOL_05699	114.0	3.6e-30	N/A	N/A
PHROG	UHGV-0036844_24	phrog_4433	87.5	3.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0036844_24	742733.HMPREF9469_00220	158.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0036844_24	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0036844_24	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0036844_25	phrog_8470	204.6	0	N/A	unknown function
UniRef90	UHGV-0036844_25	UniRef90_UPI000E4BB21C	1025.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0036844_25	742733.HMPREF9469_00219	349.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0036844_25	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0036844_25	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0036844_26	phrog_15077	105.0	6.8e-31	N/A	unknown function
UniRef90	UHGV-0036844_26	UniRef90_A0A3A6HZA9	167.0	7.42688e-44	N/A	N/A
eggNOG-mapper	UHGV-0036844_26	1280698.AUJS01000007_gene1019	189.0	0	N/A	N/A
structural_annotation	UHGV-0036844_26	PF11300,NF038070	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036844_28	PF09889,COG4068	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036844_29	UniRef90_UPI001D072F7E	61.2	0.0000000238	N/A	N/A
eggNOG-mapper	UHGV-0036844_29	397290.C810_01492	61.2	0.00000000223	N/A	N/A
KOfam	UHGV-0036844_30	K03698	44.5	0.0000000000018	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0036844_30	phrog_28876	91.0	9e-27	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0036844_30	UniRef90_A0A843HIF4	184.0	0	HDIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0036844_30	1235800.C819_00499	216.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0036844_30	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0036844_30	PF21447,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0036844_34	K07474	74.4	2.9e-21	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0036844_34	phrog_2606	137.0	1.4013e-45	terminase small subunit	head and packaging
UniRef90	UHGV-0036844_34	UniRef90_A0A3A9GB54	158.0	8.54792e-44	Phage portal protein	N/A
eggNOG-mapper	UHGV-0036844_34	1415774.U728_838	124.0	2.44e-31	terminase, small subunit	N/A
Pfam	UHGV-0036844_34	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0036844_34	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0036844_34	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0036844_34	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0036844_35	K06909	100.6	1.7e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0036844_35	phrog_979	213.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0036844_35	UniRef90_A0A2V2D4K5	998.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0036844_35	411483.FAEPRAA2165_01044	634.0	0	Terminase-like family	N/A
Pfam	UHGV-0036844_35	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0036844_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0036844_35	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0036844_36	phrog_156	342.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0036844_36	748224.HMPREF9436_02547	509.0	0	N/A	N/A
structural_annotation	UHGV-0036844_36	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0036844_37	K07584	72.6	6.5e-21	N/A	N/A
PHROG	UHGV-0036844_37	phrog_4478	67.6	1.4e-19	peptidase	other
UniRef90	UHGV-0036844_37	UniRef90_A0A416Z2U9	228.0	0	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0036844_37	1121914.AUDW01000025_gene171	51.6	0.000000755	Cysteine protease Prp	N/A
Pfam	UHGV-0036844_37	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0036844_37	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0036844_38	phrog_13908	231.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0036844_38	1321782.HMPREF1986_00346	83.6	0.0000000000000013	N/A	N/A
PHROG	UHGV-0036844_39	phrog_1357	267.8	0	major head protein	head and packaging
UniRef90	UHGV-0036844_39	UniRef90_A0A3R6PQZ4	633.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0036844_39	411483.FAEPRAA2165_01040	388.0	0	N/A	N/A
Pfam	UHGV-0036844_39	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0036844_39	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0036844_39	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0036844_40	phrog_15239	53.1	0.0000000000000043	N/A	unknown function
PHROG	UHGV-0036844_41	phrog_12105	131.3	4e-39	N/A	unknown function
eggNOG-mapper	UHGV-0036844_41	1226322.HMPREF1545_03850	70.5	0.0000000000000662	N/A	N/A
PHROG	UHGV-0036844_42	phrog_511	236.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0036844_42	1321782.HMPREF1986_00351	320.0	0	N/A	N/A
structural_annotation	UHGV-0036844_42	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0036844_44	phrog_21397	43.8	0.000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0036844_44	1410650.JHWL01000003_gene2815	125.0	4.39e-29	N/A	N/A
PHROG	UHGV-0036844_45	phrog_22978	556.7	0	N/A	unknown function
UniRef90	UHGV-0036844_45	UniRef90_R5G452	570.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0036844_45	1410650.JHWL01000003_gene2814	649.0	0	N/A	N/A
Pfam	UHGV-0036844_45	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-0036844_46	phrog_3639	51.5	0.000000000000012	minor tail protein	tail
UniRef90	UHGV-0036844_46	UniRef90_A0A3R6TVQ8	454.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036844_46	1160721.RBI_I01572	68.9	0.0000000000927	N/A	N/A
Pfam	UHGV-0036844_46	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0036844_46	PF10651,NF032891,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0036844_47	phrog_1980	53.5	0.0000000000000036	tail fiber protein	tail
UniRef90	UHGV-0036844_47	UniRef90_A0A3R6XFV5	680.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0036844_47	397288.C806_00116	86.7	7.99e-16	N/A	N/A
Pfam	UHGV-0036844_47	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-0036844_48	phrog_199	77.3	1.7e-22	holin	lysis
UniRef90	UHGV-0036844_48	UniRef90_A0A3R6Q4W7	288.0	0	Holin	N/A
eggNOG-mapper	UHGV-0036844_48	411462.DORLON_00766	198.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0036844_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0036844_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0036844_48	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0036844_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0036844_49	phrog_1048	103.2	3.8e-30	N/A	unknown function
UniRef90	UHGV-0036844_49	UniRef90_A0A417PRP3	144.0	3.28044e-42	N/A	N/A
eggNOG-mapper	UHGV-0036844_49	1235800.C819_00487	142.0	2.8026e-43	N/A	N/A
Pfam	UHGV-0036844_49	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0036844_49	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0036844_49	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-0036844_50	K01448	101.8	8.2e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0036844_50	phrog_435	151.3	7.00649e-45	endolysin	lysis
UniRef90	UHGV-0036844_50	UniRef90_A0A416Z2X7	498.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0036844_50	1469948.JPNB01000001_gene537	188.0	0	hmm pf01520	N/A
Pfam	UHGV-0036844_50	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0036844_50	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0036844_50	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A