UHGV-0037187 (vOTU-061109)

Viral Genome: UHGV-0037187

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0037187
vOTU ID	vOTU-061109
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_17_RAJ0019YZ__NODE_1780_length_34052_cov_16.833966
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.16 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.03
Jumbo phage	No

Genome content
Genome length (bp)	34,052
GC content	50.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	89%
Average CDS length (bps)	511.88
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0037187_1	K14059	133.8	2.3e-39	int; integrase	N/A
PHROG	UHGV-0037187_1	phrog_1	123.3	2.4e-36	integrase	integration and excision
UniRef90	UHGV-0037187_1	UniRef90_U2UCK2	295.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0037187_1	1321782.HMPREF1986_00315	295.0	0	Phage integrase family	N/A
Pfam	UHGV-0037187_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0037187_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0037187_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0037187_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0037187_2	K14623	382.4	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0037187_2	phrog_8036	393.3	0	N/A	unknown function
UniRef90	UHGV-0037187_2	UniRef90_A0A1M6TGW2	490.0	0	DNA-damage-inducible protein D	N/A
eggNOG-mapper	UHGV-0037187_2	1514668.JOOA01000001_gene65	404.0	0	BRO family, N-terminal domain	N/A
AcrCatalog	UHGV-0037187_2	cluster_17589	153.0	0	NA	N/A
PADLOC	UHGV-0037187_2	Specificity_I_00032	381.8	0	Type I specificity subunit	RM
Pfam	UHGV-0037187_2	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0037187_2	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0037187_2	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0037187_2	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_3	phrog_20886	49.8	0.000000000000038	N/A	unknown function
structural_annotation	UHGV-0037187_3	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0037187_4	K22299	48.4	0.0000000000002	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0037187_4	phrog_8	58.0	2.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0037187_4	UniRef90_UPI000488586D	113.0	5.28e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0037187_4	1111454.HMPREF1250_1030	81.3	4.22e-18	Helix-turn-helix domain protein	N/A
Pfam	UHGV-0037187_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0037187_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0037187_4	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037187_5	UniRef90_C7G6N8	82.8	2.9e-19	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0037187_5	658086.HMPREF0994_04275	50.8	0.000000267	N/A	N/A
Pfam	UHGV-0037187_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0037187_5	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_19	phrog_24368	42.6	0.0000000000074	N/A	unknown function
PHROG	UHGV-0037187_20	phrog_824	125.5	1.6e-37	N/A	unknown function
UniRef90	UHGV-0037187_20	UniRef90_A0A1Y3WFH5	164.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0037187_20	1232452.BAIB02000007_gene1645	155.0	0	VRR_NUC	N/A
Pfam	UHGV-0037187_20	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0037187_20	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_23	phrog_3584	164.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0037187_23	742740.HMPREF9474_04323	176.0	0	N/A	N/A
structural_annotation	UHGV-0037187_23	PF11726	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037187_24	760568.Desku_0919	98.6	1.46e-22	N/A	N/A
structural_annotation	UHGV-0037187_24	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_28	phrog_11237	103.1	2.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-0037187_28	1235798.C817_04578	129.0	1.13e-36	N/A	N/A
UniRef90	UHGV-0037187_30	UniRef90_A0A3A9FI03	83.2	1.43e-19	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0037187_30	1304866.K413DRAFT_0813	73.2	1.89e-16	N/A	N/A
PHROG	UHGV-0037187_31	phrog_338	53.7	0.0000000000000046	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037187_31	UniRef90_A0A3E4GMG2	177.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0037187_31	748224.HMPREF9436_01465	166.0	0	N/A	N/A
UniRef90	UHGV-0037187_32	UniRef90_R6GFM0	55.1	0.0000000161	Conserved domain protein	N/A
PHROG	UHGV-0037187_33	phrog_9	172.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0037187_33	UniRef90_A0A1H6UXL9	698.0	0	Phage Terminase	N/A
eggNOG-mapper	UHGV-0037187_33	1123263.AUKY01000112_gene2060	693.0	0	phage terminase, large subunit	N/A
COG	UHGV-0037187_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0037187_33	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_34	phrog_104	130.3	1.3e-38	portal protein	head and packaging
UniRef90	UHGV-0037187_34	UniRef90_UPI0009847372	419.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0037187_34	1123263.AUKY01000112_gene2059	399.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0037187_34	PF05133,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_35	phrog_104	47.2	0.00000000000023	portal protein	head and packaging
eggNOG-mapper	UHGV-0037187_35	748224.HMPREF9436_01468	201.0	0	Phage portal protein, SPP1 Gp6-like	N/A
PHROG	UHGV-0037187_36	phrog_193	120.6	1.6e-35	head maturation protease	head and packaging
UniRef90	UHGV-0037187_36	UniRef90_A0A6N8H118	238.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0037187_36	748224.HMPREF9436_01469	249.0	0	N/A	N/A
Pfam	UHGV-0037187_36	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-0037187_36	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0037187_36	PF21814	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_38	phrog_3675	102.1	2.7e-30	N/A	unknown function
UniRef90	UHGV-0037187_38	UniRef90_A0A1H9BUF5	121.0	1.54e-33	YjcQ protein	N/A
eggNOG-mapper	UHGV-0037187_38	665950.HMPREF1025_02533	128.0	4.32e-37	YjcQ protein	N/A
Pfam	UHGV-0037187_38	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0037187_38	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_39	phrog_1793	84.6	1.6e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0037187_39	UniRef90_UPI001C03A2F1	130.0	8.06e-36	N/A	N/A
eggNOG-mapper	UHGV-0037187_39	1123263.AUKY01000068_gene501	120.0	3.12e-32	N/A	N/A
structural_annotation	UHGV-0037187_39	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_40	phrog_544	92.0	7.1e-27	major head protein	head and packaging
UniRef90	UHGV-0037187_40	UniRef90_A0A810PZM2	142.0	3.51e-36	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0037187_40	1347392.CCEZ01000005_gene1236	126.0	8.72e-32	N/A	N/A
structural_annotation	UHGV-0037187_40	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_42	phrog_137	55.5	8.8e-16	head-tail adaptor Ad1	connector
UniRef90	UHGV-0037187_42	UniRef90_E2ZGA8	117.0	9.63e-32	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0037187_42	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_43	phrog_501	72.6	5.5e-21	head closure Hc1	connector
eggNOG-mapper	UHGV-0037187_43	748224.HMPREF9436_00693	135.0	9.65e-40	N/A	N/A
structural_annotation	UHGV-0037187_43	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_44	phrog_387	77.4	1.4e-22	neck protein	connector
eggNOG-mapper	UHGV-0037187_44	1214184.ALKY01000039_gene914	81.6	1.45e-19	N/A	N/A
PHROG	UHGV-0037187_45	phrog_123	64.0	2.6e-18	tail terminator	connector
UniRef90	UHGV-0037187_45	UniRef90_F3MWA9	103.0	2.67e-26	N/A	N/A
eggNOG-mapper	UHGV-0037187_45	1280698.AUJS01000007_gene1043	106.0	2.73e-28	N/A	N/A
structural_annotation	UHGV-0037187_45	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_46	phrog_117	180.4	0	major tail protein	tail
UniRef90	UHGV-0037187_46	UniRef90_A0A356C4M0	228.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0037187_46	1121864.OMO_02158	212.0	0	domain, Protein	N/A
COG	UHGV-0037187_46	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037187_46	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_47	phrog_1526	77.5	1.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0037187_47	665950.HMPREF1025_02524	67.8	0.0000000000000861	N/A	N/A
PHROG	UHGV-0037187_48	phrog_1633	156.4	0	N/A	unknown function
UniRef90	UHGV-0037187_48	UniRef90_A0A139QHL2	130.0	8.28e-37	N/A	N/A
eggNOG-mapper	UHGV-0037187_48	585203.SMSK564_1277	125.0	1.48e-35	N/A	N/A
Pfam	UHGV-0037187_48	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0037187_48	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_49	phrog_6900	211.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0037187_49	UniRef90_UPI000DFF7CD9	308.0	0	PblA	N/A
eggNOG-mapper	UHGV-0037187_49	482234.SCAZ3_03770	338.0	0	phage tail tape measure protein	N/A
COG	UHGV-0037187_49	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0037187_49	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_50	phrog_33	87.2	3e-25	distal tail protein Dit	tail
UniRef90	UHGV-0037187_50	UniRef90_A0A1C5W6B6	170.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0037187_50	1160721.RBI_I01575	128.0	1.61e-33	Phage tail protein	N/A
COG	UHGV-0037187_50	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0037187_50	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_51	phrog_1067	288.7	0	minor head protein	head and packaging
UniRef90	UHGV-0037187_51	UniRef90_UPI000C7C59F9	436.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0037187_51	1123263.AUKY01000068_gene489	337.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0037187_51	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0037187_51	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0037187_51	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0037187_51	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0037187_52	K16628	139.4	1.40004e-41	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0037187_52	phrog_8745	119.0	0	tail fiber protein	tail
Pfam	UHGV-0037187_52	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0037187_53	K19721	139.1	1.6e-41	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0037187_53	phrog_5073	125.5	0	tail fiber protein	tail
Pfam	UHGV-0037187_53	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0037187_53	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
KOfam	UHGV-0037187_54	K03733	215.8	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0037187_54	phrog_1	158.3	0	integrase	integration and excision
UniRef90	UHGV-0037187_54	UniRef90_A0A416L1N4	508.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0037187_54	610130.Closa_3343	473.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0037187_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0037187_54	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0037187_54	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037187_56	610130.Closa_0760	59.7	0.000000000872	N/A	N/A
PHROG	UHGV-0037187_57	phrog_8908	42.2	0.000000000011	N/A	unknown function
PHROG	UHGV-0037187_58	phrog_199	87.6	1.4e-25	holin	lysis
UniRef90	UHGV-0037187_58	UniRef90_A0A417W6L6	219.0	0	Holin	N/A
eggNOG-mapper	UHGV-0037187_58	742740.HMPREF9474_02333	217.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0037187_58	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0037187_58	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0037187_58	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0037187_58	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0037187_59	phrog_14030	138.9	2.50006e-41	N/A	unknown function
UniRef90	UHGV-0037187_59	UniRef90_UPI001F3A7341	258.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0037187_59	411468.CLOSCI_01513	222.0	0	N/A	N/A
Pfam	UHGV-0037187_59	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
structural_annotation	UHGV-0037187_59	PF18342,NF041850,COG3807	N/A	N/A	N/A	N/A