UHGV-0037575 (vOTU-067850)

Viral Genome: UHGV-0037575

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0037575
vOTU ID	vOTU-067850
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_19_RAJ0022YZ__NODE_1788_length_44676_cov_200.260230
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9787
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.8
Jumbo phage	No

Genome content
Genome length (bp)	44,676
GC content	51.90%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	75
CDS density	89%
Average CDS length (bps)	529.76
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0037575_1	phrog_27197	69.6	3.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0037575_1	886882.PPSC2_p0048	50.8	0.00000687	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0037575_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0037575_1	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037575_3	PF00412	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_5	phrog_155	88.2	1.1e-25	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037575_5	UniRef90_A0A1C6J8G0	260.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0037575_5	1268072.PSAB_05935	177.0	0	ERF superfamily	N/A
Pfam	UHGV-0037575_5	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0037575_5	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_6	phrog_72	50.8	0.0000000000000068	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037575_6	UniRef90_A0A8D9PDS2	260.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0037575_6	445972.ANACOL_01825	143.0	7.61003e-41	N/A	N/A
structural_annotation	UHGV-0037575_6	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-0037575_8	K03111	115.0	1e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0037575_8	phrog_44	116.0	3.4e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037575_8	UniRef90_A0A810PUK9	242.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0037575_8	1203606.HMPREF1526_01880	111.0	1.12e-29	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0037575_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0037575_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0037575_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0037575_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0037575_8	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_9	phrog_15768	96.2	4.4e-28	N/A	unknown function
UniRef90	UHGV-0037575_9	UniRef90_A0A417QFV0	143.0	1.48e-38	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0037575_9	203119.Cthe_2466	164.0	0	N/A	N/A
structural_annotation	UHGV-0037575_9	PF01475,MF_01819,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0037575_10	K02315	123.1	3.1e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0037575_10	phrog_50	121.0	1.3e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037575_10	UniRef90_A0A810Q3X8	454.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0037575_10	445972.ANACOL_01829	184.0	0	N/A	N/A
Pfam	UHGV-0037575_10	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0037575_10	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0037575_10	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0037575_11	K00558	40.7	0.0000000000000023	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0037575_11	phrog_16427	83.1	5e-25	DNA methyltransferase	other
UniRef90	UHGV-0037575_11	UniRef90_A0A6N9PX21	262.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0037575_11	657322.FPR_26610	207.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0037575_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0037575_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0037575_12	TIGR00122,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-0037575_14	K01160	71.6	1.9e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0037575_14	phrog_34	63.6	3.9e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037575_14	UniRef90_UPI0018ABA1B6	158.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0037575_14	561177.ANHYDRO_01396	114.0	6.93e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0037575_14	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0037575_14	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0037575_14	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_16	phrog_22529	117.5	6e-35	N/A	unknown function
UniRef90	UHGV-0037575_16	UniRef90_A0A810Q1V0	281.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0037575_16	411463.EUBVEN_00667	105.0	8.59e-26	3D domain	N/A
Pfam	UHGV-0037575_16	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0037575_16	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0037575_16	PF06725,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_20	phrog_38832	73.9	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0037575_20	665956.HMPREF1032_00143	77.4	0.00000000000000139	N/A	N/A
structural_annotation	UHGV-0037575_20	PF18300,MF_01549,NF008636,COG4568	N/A	N/A	N/A	N/A
Pfam	UHGV-0037575_21	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0037575_21	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0037575_21	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_22	phrog_22543	44.2	0.0000000000031	N/A	unknown function
UniRef90	UHGV-0037575_22	UniRef90_A0A8D9PDK2	62.8	0.0000000000555	Zinc-ribbon containing domain	N/A
eggNOG-mapper	UHGV-0037575_25	693746.OBV_18010	128.0	1.18e-35	N/A	N/A
structural_annotation	UHGV-0037575_25	TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037575_28	UniRef90_UPI001D07B715	113.0	1.8e-28	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0037575_28	1235793.C809_00539	54.7	0.000000982	N/A	N/A
Pfam	UHGV-0037575_28	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0037575_28	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_30	phrog_6244	50.0	0.000000000000064	N/A	unknown function
eggNOG-mapper	UHGV-0037575_30	1354300.AUQY01000005_gene215	107.0	1.41e-29	N/A	N/A
KOfam	UHGV-0037575_34	K14060	140.7	1.19993e-41	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0037575_34	phrog_125	188.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037575_34	UniRef90_A6NXH6	232.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0037575_34	411467.BACCAP_02922	232.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0037575_34	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0037575_34	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0037575_34	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_36	phrog_38	150.5	9.80909e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0037575_36	UniRef90_A0A6I2QXZ5	882.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0037575_36	1298920.KI911353_gene2682	289.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0037575_36	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0037575_36	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037575_36	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_37	phrog_64	220.0	0	portal protein	head and packaging
UniRef90	UHGV-0037575_37	UniRef90_A0A6I2QXE1	691.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0037575_37	1123263.AUKY01000015_gene1609	415.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0037575_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0037575_37	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_39	phrog_1328	121.3	5.8e-36	major head protein	head and packaging
UniRef90	UHGV-0037575_39	UniRef90_UPI00164DD2D5	577.0	0	N/A	N/A
eggNOG-mapper	UHGV-0037575_39	665956.HMPREF1032_03619	217.0	0	N/A	N/A
Pfam	UHGV-0037575_39	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0037575_39	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037575_40	UniRef90_UPI001898B4B4	146.0	1.62551e-43	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0037575_40	1298920.KI911353_gene2658	56.2	0.00000000774	N/A	N/A
Pfam	UHGV-0037575_40	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0037575_40	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037575_41	1298920.KI911353_gene2656	88.2	1.11e-20	N/A	N/A
eggNOG-mapper	UHGV-0037575_42	1298920.KI911353_gene2654	60.5	0.00000000499	N/A	N/A
structural_annotation	UHGV-0037575_43	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_44	phrog_158	61.1	2.4e-17	major tail protein	tail
UniRef90	UHGV-0037575_44	UniRef90_A0A1C6L0H9	222.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0037575_44	1232453.BAIF02000058_gene1634	97.4	5.23e-24	N/A	N/A
Pfam	UHGV-0037575_44	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0037575_44	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037575_45	UniRef90_A0A496N7D3	132.0	8.52e-38	N/A	N/A
eggNOG-mapper	UHGV-0037575_45	469596.HMPREF9488_01311	92.8	4.43e-23	N/A	N/A
Pfam	UHGV-0037575_45	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0037575_45	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037575_46	1121333.JMLH01000047_gene1011	50.8	0.00000182	N/A	N/A
PHROG	UHGV-0037575_47	phrog_1535	154.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0037575_47	UniRef90_R6TDK7	164.0	8.09e-38	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0037575_47	1121866.AUGK01000003_gene1437	338.0	0	phage tail tape measure protein	N/A
COG	UHGV-0037575_47	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0037575_47	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_48	phrog_1194	129.7	9.2e-39	N/A	unknown function
UniRef90	UHGV-0037575_48	UniRef90_A0A1Z5ISU0	104.0	1.81e-26	N/A	N/A
eggNOG-mapper	UHGV-0037575_48	673837.D2IZU9_9CAUD	119.0	2.67e-33	N/A	N/A
Pfam	UHGV-0037575_48	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0037575_48	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_49	phrog_6616	117.6	2.3e-36	tail protein	tail
UniRef90	UHGV-0037575_49	UniRef90_A0A0V8CZK7	70.9	0.00000000749	Gp58 domain-containing protein	N/A
eggNOG-mapper	UHGV-0037575_49	469596.HMPREF9488_01318	272.0	0	N/A	N/A
structural_annotation	UHGV-0037575_49	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_50	phrog_372	332.1	0	tail protein	tail
UniRef90	UHGV-0037575_50	UniRef90_A0A3E3E6C0	242.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0037575_50	1211844.CBLM010000016_gene1479	210.0	0	N/A	N/A
Pfam	UHGV-0037575_50	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0037575_50	PF05895,MF_04116,NF010681,COG3291,COG5608	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_51	phrog_1863	70.7	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0037575_51	718252.FP2_04900	112.0	1.59e-31	N/A	N/A
PHROG	UHGV-0037575_52	phrog_15594	76.5	2.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0037575_52	1118055.CAGU01000013_gene763	56.6	0.00000000415	N/A	N/A
structural_annotation	UHGV-0037575_52	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_53	phrog_35892	106.8	0	N/A	unknown function
Pfam	UHGV-0037575_53	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
Pfam	UHGV-0037575_53	PF13855	N/A	N/A	Leucine rich repeat	LRR_8
structural_annotation	UHGV-0037575_53	PF13306,NF041351	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_54	phrog_1129	67.7	1.2e-19	holin	lysis
UniRef90	UHGV-0037575_54	UniRef90_A0A810PUU2	181.0	0	Holin	N/A
eggNOG-mapper	UHGV-0037575_54	1410668.JNKC01000001_gene1676	96.3	5.31e-25	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0037575_54	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0037575_54	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0037575_55	K01448	67.2	2.5e-19	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0037575_55	phrog_435	87.4	2.1e-25	endolysin	lysis
UniRef90	UHGV-0037575_55	UniRef90_A0A810PZ73	228.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0037575_55	697281.Mahau_0598	102.0	4.63e-23	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0037575_55	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0037575_55	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0037575_55	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0037575_55	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0037575_58	phrog_22984	52.2	0.000000000000011	N/A	unknown function
PHROG	UHGV-0037575_59	phrog_16490	64.2	2.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0037575_59	476272.RUMHYD_01770	54.7	0.00000197	N/A	N/A
structural_annotation	UHGV-0037575_60	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037575_61	UniRef90_A0A843GWV6	115.0	2.05e-31	Rubrerythrin domain-containing protein	N/A
KOfam	UHGV-0037575_62	K14059	162.6	0	int; integrase	N/A
PHROG	UHGV-0037575_62	phrog_1	164.8	0	integrase	integration and excision
UniRef90	UHGV-0037575_62	UniRef90_A0A1C5W824	550.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0037575_62	445972.ANACOL_01797	295.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0037575_62	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0037575_62	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0037575_62	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037575_63	UniRef90_A0A8D9UHA6	159.0	0	Helix-turn-helix XRE-family like protein	N/A
structural_annotation	UHGV-0037575_63	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037575_66	COG1321	N/A	N/A	N/A	N/A
COG	UHGV-0037575_67	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0037575_67	NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037575_68	UniRef90_A0A810QCI5	55.8	0.00000000908	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0037575_68	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0037575_68	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0037575_68	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037575_69	UniRef90_A0A8D9PDM8	70.9	0.00000000000000822	Pyocin activator protein	N/A
structural_annotation	UHGV-0037575_69	PF11112,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0037575_71	K08131	57.8	6.1e-17	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0037575_71	phrog_4433	252.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0037575_71	573061.Clocel_3578	131.0	4.18e-32	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0037575_71	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0037575_71	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0037575_71	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037575_73	PF00412	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037575_75	1268072.PSAB_05935	68.6	0.000000000000109	ERF superfamily	N/A