UHGV-0037611 (vOTU-080651)

Viral Genome: UHGV-0037611

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0037611
vOTU ID	vOTU-080651
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_4_2225__NODE_2393_length_41501_cov_5.547654
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.36 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.979
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.42
Jumbo phage	No

Genome content
Genome length (bp)	41,501
GC content	55.02%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	93%
Average CDS length (bps)	744.35
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0037611_1	UniRef90_UPI001D08E6C0	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0037611_1	411467.BACCAP_02615	164.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0037611_1	PF14287	N/A	N/A	N/A	DUF4368
COG	UHGV-0037611_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
KOfam	UHGV-0037611_2	K14059	169.7	0	int; integrase	N/A
PHROG	UHGV-0037611_2	phrog_1	159.5	0	integrase	integration and excision
UniRef90	UHGV-0037611_2	UniRef90_A0A8J6JEJ8	223.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0037611_2	742738.HMPREF9460_01344	180.0	0	Phage integrase family	N/A
Pfam	UHGV-0037611_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0037611_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0037611_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037611_4	UniRef90_A0A3D3Y4M8	56.6	0.00000155	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0037611_4	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0037611_4	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0037611_6	K22300	55.6	1.1e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0037611_6	phrog_8	58.5	1.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0037611_6	UniRef90_A0A829FFM6	82.8	4.98e-17	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0037611_6	226185.EF_2469	87.8	2.3e-20	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0037611_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0037611_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
UniRef90	UHGV-0037611_7	UniRef90_UPI00156EC6B6	80.9	9.86e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0037611_7	1292035.H476_1036	50.8	0.000000129	N/A	N/A
Pfam	UHGV-0037611_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0037611_7	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0037611_8	K22300	67.8	5.1e-25	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0037611_8	phrog_8	68.1	3.2e-29	transcriptional regulator	transcription regulation
UniRef90	UHGV-0037611_8	UniRef90_D4CXJ6	60.5	0.000000208	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0037611_8	658659.HMPREF0983_03304	71.2	0.000000000000766	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0037611_8	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0037611_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0037611_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0037611_9	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0037611_9	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0037611_10	phrog_2113	55.3	8.4e-16	N/A	unknown function
PHROG	UHGV-0037611_14	phrog_434	300.2	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037611_14	UniRef90_A0A3D3XZF3	367.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0037611_14	1121344.JHZO01000003_gene985	290.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0037611_14	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0037611_14	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0037611_14	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0037611_14	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0037611_15	K07455	170.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0037611_15	phrog_148	172.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037611_15	UniRef90_UPI000F05C9E1	309.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0037611_15	1243664.CAVL020000020_gene3198	186.0	0	RecT family	N/A
Pfam	UHGV-0037611_15	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0037611_15	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0037611_15	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0037611_15	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0037611_16	phrog_8489	165.2	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0037611_16	1415774.U728_867	124.0	1.45e-30	DnaD domain protein	N/A
COG	UHGV-0037611_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0037611_18	phrog_824	137.3	4.90006e-41	N/A	unknown function
UniRef90	UHGV-0037611_18	UniRef90_UPI00189BCDD7	142.0	3.09e-41	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0037611_18	1408428.JNJP01000030_gene973	114.0	5.25e-30	VRR_NUC	N/A
Pfam	UHGV-0037611_19	PF12664	N/A	N/A	N/A	DUF3789
KOfam	UHGV-0037611_21	K21919	80.6	1.7e-23	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0037611_21	phrog_923	79.5	2.2e-23	N/A	unknown function
UniRef90	UHGV-0037611_21	UniRef90_UPI001A9B9B76	149.0	1.44053e-42	pentapeptide repeat-containing protein	N/A
Pfam	UHGV-0037611_21	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-0037611_21	PF13599,NF000421,COG1357	N/A	N/A	N/A	N/A
PHROG	UHGV-0037611_24	phrog_1384	128.6	3.8e-38	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0037611_24	665956.HMPREF1032_03086	283.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0037611_24	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037611_28	1123263.AUKY01000096_gene1822	57.8	0.000000103	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0037611_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0037611_32	K06909	162.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0037611_32	phrog_979	152.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0037611_32	UniRef90_A0A3C0NMI6	668.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0037611_32	1410650.JHWL01000003_gene2834	642.0	0	N/A	N/A
Pfam	UHGV-0037611_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0037611_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0037611_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0037611_33	phrog_156	284.2	0	portal protein	head and packaging
UniRef90	UHGV-0037611_33	UniRef90_A0A8D9UH10	508.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0037611_33	1410650.JHWL01000003_gene2833	518.0	0	N/A	N/A
structural_annotation	UHGV-0037611_33	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0037611_34	K07584	48.7	0.00000000000014	N/A	N/A
PHROG	UHGV-0037611_34	phrog_4478	40.7	0.000000000027	peptidase	other
eggNOG-mapper	UHGV-0037611_34	1009370.ALO_08023	55.8	0.0000000184	Cysteine protease Prp	N/A
Pfam	UHGV-0037611_34	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0037611_34	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037611_34	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0037611_35	phrog_13908	295.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0037611_35	1410650.JHWL01000003_gene2831	149.0	4.08001e-40	N/A	N/A
PHROG	UHGV-0037611_36	phrog_1357	273.2	0	major head protein	head and packaging
UniRef90	UHGV-0037611_36	UniRef90_A0A2V2GQW4	424.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0037611_36	748224.HMPREF9436_01399	367.0	0	N/A	N/A
Pfam	UHGV-0037611_36	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0037611_36	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0037611_36	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0037611_37	phrog_15239	60.1	3.3e-17	N/A	unknown function
PHROG	UHGV-0037611_38	phrog_12105	121.2	5.2e-36	N/A	unknown function
eggNOG-mapper	UHGV-0037611_38	1519439.JPJG01000060_gene1891	67.0	0.00000000000146	N/A	N/A
PHROG	UHGV-0037611_39	phrog_511	241.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0037611_39	1410650.JHWL01000003_gene2827	324.0	0	N/A	N/A
structural_annotation	UHGV-0037611_39	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0037611_41	phrog_372	109.9	2e-32	tail protein	tail
UniRef90	UHGV-0037611_41	UniRef90_UPI001EDDCD01	106.0	2.84e-20	N/A	N/A
eggNOG-mapper	UHGV-0037611_41	1399942.U3PFX4_9CAUD	78.6	0.00000000000282	peptidoglycan catabolic process	N/A
Pfam	UHGV-0037611_41	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0037611_41	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037611_42	1410650.JHWL01000003_gene2815	133.0	1.25e-32	N/A	N/A
PHROG	UHGV-0037611_43	phrog_22978	415.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0037611_43	573370.DMR_24920	64.7	0.000000645	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	N/A
Pfam	UHGV-0037611_43	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
COG	UHGV-0037611_43	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-0037611_44	K13884	48.0	0.00000000000011	MARCO; macrophage receptor with collagenous structure	N/A
PHROG	UHGV-0037611_44	phrog_32779	52.7	0.0000000000000051	N/A	unknown function
Pfam	UHGV-0037611_44	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0037611_45	K01104	45.6	0.00000000000059	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	N/A
UniRef90	UHGV-0037611_45	UniRef90_UPI001BF10870	217.0	0	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-0037611_45	794903.OPIT5_20595	72.8	0.0000000000895	protein tyrosine phosphatase activity	N/A
Pfam	UHGV-0037611_45	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-0037611_45	COG2365	N/A	N/A	Protein tyrosine/serine phosphatase Oca4	N/A
structural_annotation	UHGV-0037611_45	PF13350,TIGR01244,COG2365	N/A	N/A	N/A	N/A
PHROG	UHGV-0037611_46	phrog_1493	46.4	0.00000000000073	endolysin	lysis
UniRef90	UHGV-0037611_46	UniRef90_A0A1C6GMR6	205.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0037611_46	871963.Desdi_1346	123.0	4.15e-30	NLP P60 protein	N/A
Pfam	UHGV-0037611_46	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0037611_46	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0037611_46	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0037611_47	phrog_937	64.8	1.4e-18	hemolysin	other
eggNOG-mapper	UHGV-0037611_47	1519439.JPJG01000023_gene533	89.4	5.79e-22	N/A	N/A
PHROG	UHGV-0037611_48	phrog_1129	69.3	3.8e-20	holin	lysis
UniRef90	UHGV-0037611_48	UniRef90_A0A2V2CUX8	127.0	1.19e-36	Enolase	N/A
eggNOG-mapper	UHGV-0037611_48	1226322.HMPREF1545_00069	118.0	1.02e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0037611_48	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0037611_48	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037611_49	UniRef90_A0A8D9PDT6	83.6	2.82e-19	Transcriptional regulatory protein	N/A
UniRef90	UHGV-0037611_52	UniRef90_A0A843GWV6	87.0	3.47e-20	Rubrerythrin domain-containing protein	N/A
Pfam	UHGV-0037611_52	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
structural_annotation	UHGV-0037611_52	PF02255,NF007156,COG1447	N/A	N/A	N/A	N/A