UHGV-0037783 (vOTU-106483)

Viral Genome: UHGV-0037783

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0037783
vOTU ID	vOTU-106483
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_6_2233__NODE_3420_length_30252_cov_6.167688
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.79 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.975
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.83
Jumbo phage	No

Genome content
Genome length (bp)	30,252
GC content	50.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	91%
Average CDS length (bps)	583.66
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0037783_1	phrog_4433	173.1	0	N/A	unknown function
UniRef90	UHGV-0037783_1	UniRef90_A0A6M5C839	106.0	1.27e-25	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0037783_1	665950.HMPREF1025_01373	142.0	4.72e-39	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0037783_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0037783_1	NF000318	N/A	N/A	N/A	N/A
KOfam	UHGV-0037783_2	K07451	44.7	0.0000000000024	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0037783_2	phrog_7370	63.5	3.1e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037783_2	UniRef90_A0A498CPV0	132.0	2.73e-38	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0037783_2	445972.ANACOL_01826	102.0	4.06e-27	HNH nucleases	N/A
Pfam	UHGV-0037783_2	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0037783_3	phrog_1389	72.3	6.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0037783_3	1280692.AUJL01000025_gene2094	73.9	0.0000000000000015	N/A	N/A
structural_annotation	UHGV-0037783_3	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0037783_4	phrog_659	191.3	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037783_4	UniRef90_A0A843HUJ5	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-0037783_4	1507.HMPREF0262_00431	218.0	0	N/A	N/A
Pfam	UHGV-0037783_4	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0037783_4	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0037783_5	phrog_253	130.3	1.2e-38	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037783_5	UniRef90_UPI00189A2233	133.0	1.51e-36	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0037783_5	903814.ELI_1272	98.2	1.32e-23	Siphovirus Gp157	N/A
Pfam	UHGV-0037783_5	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0037783_5	PF05565,NF002139	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037783_12	UniRef90_UPI00136F5800	52.4	0.000000226	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0037783_12	641107.CDLVIII_1403	51.6	0.0000000761	Helix-turn-helix XRE-family like proteins	N/A
structural_annotation	UHGV-0037783_12	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0037783_13	K23779	54.2	0.0000000000000035	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0037783_13	phrog_5823	52.9	0.0000000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-0037783_13	UniRef90_E6U4C1	83.2	2.09e-18	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0037783_13	663278.Ethha_2212	83.2	3.51e-19	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0037783_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0037783_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0037783_13	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037783_14	UniRef90_A0A1C6HD04	73.9	0.0000000000000232	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0037783_14	1408322.JHYK01000019_gene245	52.0	0.00000529	Putative restriction endonuclease	N/A
Pfam	UHGV-0037783_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0037783_14	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0037783_14	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0037783_15	K06400	263.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0037783_15	phrog_95	185.1	0	integrase	integration and excision
UniRef90	UHGV-0037783_15	UniRef90_A0A3A9ED02	321.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-0037783_15	357809.Cphy_2997	264.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0037783_15	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0037783_15	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0037783_15	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0037783_15	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037783_17	658655.HMPREF0988_00916	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0037783_18	658655.HMPREF0988_00917	54.3	0.00000298	N/A	N/A
PHROG	UHGV-0037783_20	phrog_21718	47.1	0.00000000000031	N/A	unknown function
PHROG	UHGV-0037783_22	phrog_881	82.5	3e-24	holin	lysis
UniRef90	UHGV-0037783_22	UniRef90_A0A4Q7P349	103.0	9.1e-28	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0037783_22	742740.HMPREF9474_02251	101.0	9.59e-28	Putative phage holin Dp-1	N/A
Pfam	UHGV-0037783_22	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0037783_22	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0037783_23	phrog_1863	51.9	0.0000000000000084	N/A	unknown function
UniRef90	UHGV-0037783_23	UniRef90_A0A7X2Z1D1	88.2	8.05e-21	t-SNARE coiled-coil homology domain-containing protein	N/A
eggNOG-mapper	UHGV-0037783_23	1122918.KB907250_gene3599	86.7	5.47e-21	N/A	N/A
KOfam	UHGV-0037783_24	K19303	56.4	6.5e-16	mepH; murein DD-endopeptidase [EC:3.4.-.-]	N/A
PHROG	UHGV-0037783_24	phrog_329	46.8	0.000000000000098	minor tail protein	tail
UniRef90	UHGV-0037783_24	UniRef90_A0A2V2EEK9	191.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0037783_24	755731.Clo1100_1179	91.7	2.39e-19	cysteine-type peptidase activity	N/A
Pfam	UHGV-0037783_24	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0037783_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0037783_24	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0037783_24	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037783_25	PF12988	N/A	N/A	N/A	N/A
PHROG	UHGV-0037783_26	phrog_918	121.2	3e-36	N/A	unknown function
UniRef90	UHGV-0037783_26	UniRef90_Q5ULN6	123.0	1.04e-34	Orf78	N/A
eggNOG-mapper	UHGV-0037783_26	298338.Q5ULN6_9CAUD	123.0	1.74e-35	N/A	N/A
Pfam	UHGV-0037783_26	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0037783_26	PF19791	N/A	N/A	N/A	N/A
Pfam	UHGV-0037783_27	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
eggNOG-mapper	UHGV-0037783_29	718252.FP2_16970	60.1	0.0000000775	N/A	N/A
Pfam	UHGV-0037783_29	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0037783_29	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0037783_30	K19721	172.7	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0037783_30	phrog_6320	112.5	0	tail fiber protein	tail
eggNOG-mapper	UHGV-0037783_30	1519439.JPJG01000060_gene1892	83.6	0.000000000000162	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0037783_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0037783_30	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0037783_32	phrog_6616	129.8	7.7e-39	tail protein	tail
UniRef90	UHGV-0037783_32	UniRef90_A0A1M7NJ96	114.0	1.64e-22	Chaperone of endosialidase	N/A
eggNOG-mapper	UHGV-0037783_32	1305708.M9Q2I5_9CAUD	72.8	0.0000000004	peptidoglycan catabolic process	N/A
Pfam	UHGV-0037783_32	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0037783_32	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037783_33	1280696.ATVY01000086_gene2001	77.0	0.0000000000000819	N/A	N/A
PHROG	UHGV-0037783_34	phrog_1194	84.6	9.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0037783_34	1000588.HMPREF9965_1690	58.5	0.00000000234	N/A	N/A
Pfam	UHGV-0037783_34	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0037783_34	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0037783_35	phrog_1535	137.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0037783_35	UniRef90_S9TWQ7	86.3	0.000000000000191	Phage-like protein	N/A
eggNOG-mapper	UHGV-0037783_35	1122918.KB907248_gene4489	89.0	0.00000000000000462	minor tail protein	N/A
COG	UHGV-0037783_35	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0037783_40	phrog_5	43.1	0.00000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0037783_40	UniRef90_A0A6H1F582	56.2	0.000000291	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0037783_40	562981.HMPREF0428_01816	56.2	0.0000000511	N/A	N/A
PHROG	UHGV-0037783_44	phrog_1328	163.3	0	major head protein	head and packaging
UniRef90	UHGV-0037783_44	UniRef90_A0A7C7ERB8	284.0	0	N/A	N/A
eggNOG-mapper	UHGV-0037783_44	398512.JQKC01000052_gene2672	233.0	0	N/A	N/A
Pfam	UHGV-0037783_44	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0037783_44	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037783_45	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0037783_46	phrog_64	187.7	0	portal protein	head and packaging
UniRef90	UHGV-0037783_46	UniRef90_UPI001CD71C56	119.0	1.23e-25	phage portal protein	N/A
eggNOG-mapper	UHGV-0037783_46	930946.AEOP01000024_gene620	57.0	0.0000089	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0037783_46	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0037783_46	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0037783_47	K06909	286.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0037783_47	phrog_5653	117.9	5.3e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0037783_47	UniRef90_H2J4B5	276.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0037783_47	443254.Marpi_0320	276.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-0037783_47	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0037783_47	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0037783_47	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0037783_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0037783_47	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A