UHGV-0038097 (vOTU-067394)

Viral Genome: UHGV-0038097

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0038097
vOTU ID	vOTU-067394
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_9_THA1076JZ__NODE_1549_length_38620_cov_5.895701
Associated BioSample	SAMEA4969198
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9736
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.2
Jumbo phage	No

Genome content
Genome length (bp)	38,620
GC content	37.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	92%
Average CDS length (bps)	667.76
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0038097_1	K22300	56.1	8.3e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0038097_1	phrog_2967	57.4	2.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038097_1	UniRef90_A0A3D5LQZ9	233.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038097_1	1211819.CALK01000005_gene2436	73.2	0.0000000000000394	Peptidase S24-like	N/A
PADLOC	UHGV-0038097_1	retron_type_VI_hth_cluster2_1	40.3	0.000000000071	N/A	Retron
Pfam	UHGV-0038097_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038097_1	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0038097_1	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0038097_2	K18830	44.5	0.0000000000032	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0038097_2	phrog_8	41.9	0.000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038097_2	UniRef90_A0A356C4L0	115.0	9.87e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038097_2	1035189.HMPREF9954_1968	48.1	0.00000126	sequence-specific DNA binding	N/A
Pfam	UHGV-0038097_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038097_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0038097_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038097_4	COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_9	phrog_3584	241.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038097_9	UniRef90_A0A4P8IFK4	340.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038097_9	742741.HMPREF9475_00404	292.0	0	N/A	N/A
structural_annotation	UHGV-0038097_9	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0038097_10	K03469	61.3	2.1e-17	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0038097_10	phrog_531	58.3	1.4e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038097_10	UniRef90_A0A413YU26	311.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038097_10	411902.CLOBOL_05701	125.0	7.01e-35	RNase H	N/A
Pfam	UHGV-0038097_10	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0038097_10	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0038097_10	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038097_12	1280698.AUJS01000007_gene1016	157.0	0	N/A	N/A
PHROG	UHGV-0038097_13	phrog_4433	72.2	3.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0038097_13	742733.HMPREF9469_00220	126.0	3.39e-34	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0038097_13	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0038097_13	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_14	phrog_8470	171.3	0	N/A	unknown function
UniRef90	UHGV-0038097_14	UniRef90_UPI0018999714	663.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0038097_14	742733.HMPREF9469_00219	379.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0038097_14	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0038097_14	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_15	phrog_15077	91.8	1.3e-26	N/A	unknown function
UniRef90	UHGV-0038097_15	UniRef90_A0A3A6HZA9	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038097_15	1280698.AUJS01000007_gene1019	235.0	0	N/A	N/A
structural_annotation	UHGV-0038097_15	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_18	phrog_2118	105.5	5.3e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038097_18	UniRef90_A0A414A7R6	223.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0038097_18	1235799.C818_02668	170.0	0	endonuclease activity	N/A
Pfam	UHGV-0038097_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0038097_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0038097_18	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_19	phrog_424	124.8	7.3e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0038097_19	UniRef90_A0A3R6WGB6	354.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0038097_19	879308.HMPREF9130_0427	315.0	0	sulfate reduction	N/A
PADLOC	UHGV-0038097_19	SspD_00001	45.6	0.0000000000021	SspD	SSP
COG	UHGV-0038097_19	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0038097_19	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_20	phrog_20593	79.3	3.8e-23	N/A	unknown function
PHROG	UHGV-0038097_21	phrog_625	69.7	2.1e-20	N/A	unknown function
UniRef90	UHGV-0038097_21	UniRef90_A0A413YU40	266.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0038097_21	397290.C810_01502	127.0	5.44e-36	N/A	N/A
structural_annotation	UHGV-0038097_21	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_22	phrog_36	64.0	2.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038097_22	UniRef90_UPI0009BB8B35	69.3	0.00000000000347	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0038097_22	397290.C810_01391	104.0	1.65e-26	N/A	N/A
structural_annotation	UHGV-0038097_22	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_23	phrog_2538	88.0	8.9e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0038097_23	UniRef90_A0A1C5UE81	150.0	1.54143e-44	HTH_Tnp_1_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038097_23	320843.Q4ZBS0_9CAUD	62.4	0.000000000104	DNA packaging	N/A
Pfam	UHGV-0038097_23	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-0038097_23	PF13022	N/A	N/A	N/A	N/A
KOfam	UHGV-0038097_24	K06909	95.4	7.4e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0038097_24	phrog_2	71.5	1.8e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0038097_24	UniRef90_A0A413YU24	941.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0038097_24	1391647.AVSV01000003_gene1802	520.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0038097_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0038097_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0038097_24	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_25	phrog_533	284.1	0	portal protein	head and packaging
UniRef90	UHGV-0038097_25	UniRef90_A0A413YU90	928.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0038097_25	33035.JPJF01000093_gene2257	545.0	0	N/A	N/A
structural_annotation	UHGV-0038097_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_26	phrog_581	240.1	0	minor head protein	head and packaging
UniRef90	UHGV-0038097_26	UniRef90_A0A3D5LQU4	607.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0038097_26	742740.HMPREF9474_03503	431.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0038097_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0038097_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038097_26	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_28	phrog_872	81.4	1.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0038097_28	397290.C810_05225	114.0	7.12e-31	N/A	N/A
dbAPIS	UHGV-0038097_28	APIS052	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_29	phrog_2303	134.5	8.3e-40	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0038097_29	1304866.K413DRAFT_0806	138.0	3.54e-38	N/A	N/A
PHROG	UHGV-0038097_30	phrog_422	207.0	0	major head protein	head and packaging
UniRef90	UHGV-0038097_30	UniRef90_W0U896	209.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0038097_30	693746.OBV_18090	217.0	0	N/A	N/A
structural_annotation	UHGV-0038097_30	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_32	phrog_541	69.2	6.1e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0038097_32	1304866.K413DRAFT_0783	147.0	3.92364e-44	N/A	N/A
PHROG	UHGV-0038097_33	phrog_8710	124.9	2.9e-37	N/A	unknown function
eggNOG-mapper	UHGV-0038097_33	742740.HMPREF9474_03508	124.0	2.87e-35	N/A	N/A
structural_annotation	UHGV-0038097_33	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038097_34	742740.HMPREF9474_03509	127.0	9.9e-36	N/A	N/A
PHROG	UHGV-0038097_35	phrog_2595	88.2	8e-26	head-tail connector protein	connector
UniRef90	UHGV-0038097_35	UniRef90_UPI001D068DAC	140.0	1.52e-40	minor capsid protein	N/A
eggNOG-mapper	UHGV-0038097_35	742740.HMPREF9474_03510	132.0	3.94e-38	N/A	N/A
Pfam	UHGV-0038097_35	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0038097_35	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_36	phrog_820	111.2	6.9e-33	major tail protein	tail
UniRef90	UHGV-0038097_36	UniRef90_T3DDR1	181.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0038097_36	1151292.QEW_2426	181.0	0	N/A	N/A
structural_annotation	UHGV-0038097_36	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_37	phrog_8300	66.3	4.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0038097_37	1151292.QEW_2425	59.3	0.000000000613	N/A	N/A
structural_annotation	UHGV-0038097_37	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_38	phrog_8355	60.0	2.7e-17	N/A	unknown function
UniRef90	UHGV-0038097_38	UniRef90_UPI0006BBA9AA	68.6	0.000000000000333	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0038097_38	1151292.QEW_2424	71.6	7.6e-16	N/A	N/A
PHROG	UHGV-0038097_39	phrog_1535	272.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0038097_39	UniRef90_R6TDK7	355.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0038097_39	33035.JPJF01000093_gene2243	327.0	0	phage tail tape measure protein	N/A
COG	UHGV-0038097_39	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0038097_39	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_40	phrog_1194	82.4	4.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0038097_40	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-0038097_40	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_41	phrog_1401	66.1	5e-19	N/A	unknown function
UniRef90	UHGV-0038097_41	UniRef90_UPI00129D2DCF	66.2	0.0000000000275	N/A	N/A
eggNOG-mapper	UHGV-0038097_41	1294142.CINTURNW_1705	59.3	0.00000000216	N/A	N/A
structural_annotation	UHGV-0038097_41	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_42	phrog_6616	161.4	0	tail protein	tail
UniRef90	UHGV-0038097_42	UniRef90_A0A356C4L7	770.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038097_42	1294142.CINTURNW_1706	322.0	0	Phage minor structural protein	N/A
COG	UHGV-0038097_42	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0038097_42	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_44	phrog_199	73.1	3.4e-21	holin	lysis
UniRef90	UHGV-0038097_44	UniRef90_A0A3B8UJ75	240.0	0	Holin	N/A
eggNOG-mapper	UHGV-0038097_44	483218.BACPEC_01140	218.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0038097_44	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0038097_44	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0038097_44	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0038097_44	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0038097_45	K02395	48.3	0.00000000000012	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0038097_45	phrog_3513	55.9	4.7e-16	endolysin	lysis
UniRef90	UHGV-0038097_45	UniRef90_R5ZWS5	471.0	0	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-0038097_45	1423724.BAMM01000042_gene2173	59.7	0.000000153	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0038097_45	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0038097_45	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0038097_45	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0038097_45	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0038097_45	PF08230,NF004974,COG1705	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_46	phrog_1281	132.6	1.7e-39	N/A	unknown function
UniRef90	UHGV-0038097_46	UniRef90_UPI00164A9B39	147.0	1.15047e-42	N/A	N/A
eggNOG-mapper	UHGV-0038097_46	1508644.SFBmNL_01513	144.0	3.29025e-42	N/A	N/A
Pfam	UHGV-0038097_46	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0038097_46	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038097_46	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_47	phrog_5763	85.9	5.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0038097_47	1033744.CAEL01000026_gene1411	108.0	3e-25	N/A	N/A
KOfam	UHGV-0038097_48	K06400	374.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0038097_48	phrog_95	364.9	0	integrase	integration and excision
UniRef90	UHGV-0038097_48	UniRef90_A0A413YU13	930.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0038097_48	411462.DORLON_00823	456.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0038097_48	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0038097_48	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0038097_48	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0038097_48	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0038097_48	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038097_49	UniRef90_UPI0006C337A0	223.0	0	tetratricopeptide repeat protein	N/A
eggNOG-mapper	UHGV-0038097_49	2754.EH55_11435	169.0	8.40779e-45	cell adhesion	N/A
COG	UHGV-0038097_49	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0038097_50	phrog_20886	53.7	0.0000000000000025	N/A	unknown function
UniRef90	UHGV-0038097_50	UniRef90_UPI0013E038FD	53.1	0.000000137	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0038097_50	861450.HMPREF0080_02020	47.8	0.00000413	N/A	N/A
structural_annotation	UHGV-0038097_50	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0038097_51	K22299	64.0	3.5e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0038097_51	phrog_8	75.9	8e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038097_51	UniRef90_A0A413YU20	251.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0038097_51	626523.GCWU000342_01050	89.7	3.51e-21	Helix-turn-helix	N/A
PADLOC	UHGV-0038097_51	retron_type_VI_hth_cluster2_1	53.5	0.0000000000000051	N/A	Retron
Pfam	UHGV-0038097_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038097_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0038097_51	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038097_52	UniRef90_A0A413YU34	130.0	3.31e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038097_52	706433.HMPREF9430_01294	80.1	5.16e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0038097_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0038097_52	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A