UHGV-0038192 (vOTU-104460)

Viral Genome: UHGV-0038192

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0038192
vOTU ID	vOTU-104460
Representative Genome?	Yes
Source	GPD
Original genome ID	ivig_1718
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.53 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.47
Jumbo phage	No

Genome content
Genome length (bp)	24,173
GC content	40.77%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	93%
Average CDS length (bps)	476.68
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0038192_1	phrog_1129	77.5	1.1e-22	holin	lysis
UniRef90	UHGV-0038192_1	UniRef90_UPI001F15FE24	150.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0038192_1	411461.DORFOR_00721	177.0	0	N/A	N/A
Pfam	UHGV-0038192_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0038192_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_2	phrog_1009	41.0	0.000000000029	N/A	unknown function
UniRef90	UHGV-0038192_2	UniRef90_A0A173RD60	172.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0038192_2	742765.HMPREF9457_03364	182.0	0	N/A	N/A
UniRef90	UHGV-0038192_3	UniRef90_A0A415H5B1	342.0	0	ArsR family transcriptional regulator	N/A
Pfam	UHGV-0038192_3	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
structural_annotation	UHGV-0038192_3	PF01978,MF_01909,NF033788,COG1675	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_5	phrog_556	111.9	3.2e-33	minor head protein	head and packaging
UniRef90	UHGV-0038192_5	UniRef90_UPI00093128B4	150.0	1.12104e-44	minor capsid protein	N/A
eggNOG-mapper	UHGV-0038192_5	411461.DORFOR_00741	198.0	0	N/A	N/A
PHROG	UHGV-0038192_6	phrog_3366	138.4	3.00004e-41	N/A	unknown function
eggNOG-mapper	UHGV-0038192_6	411461.DORFOR_00742	275.0	0	N/A	N/A
Pfam	UHGV-0038192_6	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0038192_6	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_7	phrog_541	97.7	9.3e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0038192_7	411461.DORFOR_00743	268.0	0	N/A	N/A
PHROG	UHGV-0038192_8	phrog_10	171.8	0	major head protein	head and packaging
UniRef90	UHGV-0038192_8	UniRef90_A6BER6	610.0	0	Putative phage capsid family	N/A
eggNOG-mapper	UHGV-0038192_8	411461.DORFOR_00744	629.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0038192_8	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0038192_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0038192_8	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0038192_8	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_9	phrog_2303	146.8	1.49939e-43	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0038192_9	411461.DORFOR_00745	322.0	0	N/A	N/A
AcrCatalog	UHGV-0038192_9	cluster_74817	80.1	6.61e-21	NA	N/A
structural_annotation	UHGV-0038192_9	PF10788,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-0038192_10	K07584	46.3	0.00000000000082	N/A	N/A
PHROG	UHGV-0038192_10	phrog_4478	79.6	3e-23	peptidase	other
UniRef90	UHGV-0038192_10	UniRef90_A0A3E5EK56	184.0	0	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0038192_10	411461.DORFOR_00746	182.0	0	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0038192_10	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0038192_10	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038192_10	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038192_11	411461.DORFOR_00747	141.0	7.95938e-43	N/A	N/A
PHROG	UHGV-0038192_12	phrog_581	333.6	0	minor head protein	head and packaging
UniRef90	UHGV-0038192_12	UniRef90_A0A3E5EL65	1036.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0038192_12	411461.DORFOR_00748	962.0	0	N/A	N/A
Pfam	UHGV-0038192_12	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0038192_12	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038192_12	PF06152,TIGR01641	N/A	N/A	N/A	N/A
KOfam	UHGV-0038192_13	K06909	170.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0038192_13	phrog_533	242.8	0	portal protein	head and packaging
UniRef90	UHGV-0038192_13	UniRef90_A0A415H597	1158.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0038192_13	411461.DORFOR_00750	719.0	0	COG COG1783 Phage terminase large subunit	N/A
Pfam	UHGV-0038192_13	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0038192_13	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0038192_13	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0038192_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0038192_14	phrog_509	284.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0038192_14	UniRef90_A0A391P905	359.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0038192_14	411461.DORFOR_00751	437.0	0	DNA packaging	N/A
Pfam	UHGV-0038192_14	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
NCBIFam	UHGV-0038192_14	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0038192_14	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038192_14	NF040601,COG5484	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_16	phrog_15411	46.9	0.00000000000017	N/A	unknown function
UniRef90	UHGV-0038192_16	UniRef90_A0A415H5A0	536.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038192_16	572479.Hprae_1071	177.0	0	N/A	N/A
Pfam	UHGV-0038192_16	PF13271	N/A	N/A	N/A	DUF4062
PHROG	UHGV-0038192_17	phrog_36	79.2	5.4e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038192_17	UniRef90_A0A3R5X3C8	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038192_17	411461.DORFOR_00754	268.0	0	sigma factor activity	N/A
Pfam	UHGV-0038192_17	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0038192_17	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0038192_17	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038192_21	PF18358	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038192_22	UniRef90_A0A415H5C1	281.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0038192_22	397290.C810_00411	105.0	1.73e-27	ASCH domain	N/A
Pfam	UHGV-0038192_22	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0038192_22	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0038192_22	PF08819,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_25	phrog_59	49.5	0.000000000000057	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038192_25	UniRef90_UPI00156F191E	360.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038192_25	1410650.JHWL01000037_gene604	125.0	1.85e-33	N/A	N/A
structural_annotation	UHGV-0038192_25	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_26	phrog_15768	195.0	0	N/A	unknown function
UniRef90	UHGV-0038192_26	UniRef90_A0A415H5D2	407.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038192_26	33035.JPJF01000122_gene2459	110.0	4.79e-27	N/A	N/A
AcrCatalog	UHGV-0038192_26	cluster_38323	175.0	0	NA	N/A
Pfam	UHGV-0038192_26	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0038192_26	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_27	phrog_244	82.0	1e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0038192_27	33035.JPJF01000122_gene2460	154.0	0	N/A	N/A
structural_annotation	UHGV-0038192_27	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_29	phrog_7566	87.4	1.1e-25	N/A	unknown function
UniRef90	UHGV-0038192_29	UniRef90_A0A412EXQ2	219.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0038192_29	693746.OBV_25470	57.8	0.00000000193	N/A	N/A
eggNOG-mapper	UHGV-0038192_30	411468.CLOSCI_00314	137.0	1.91e-38	N/A	N/A
structural_annotation	UHGV-0038192_30	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_31	phrog_659	56.3	4.4e-16	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038192_31	UniRef90_A0A415H568	425.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038192_31	33035.JPJF01000135_gene5082	250.0	0	N/A	N/A
Pfam	UHGV-0038192_31	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0038192_31	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038192_34	UniRef90_UPI001F2FF670	78.6	3.81e-18	CbrC family protein	N/A
eggNOG-mapper	UHGV-0038192_35	411461.DORFOR_00023	124.0	8.88e-37	N/A	N/A
PHROG	UHGV-0038192_36	phrog_32342	69.6	3.5e-20	N/A	unknown function
PHROG	UHGV-0038192_38	phrog_32168	125.1	1.5e-37	N/A	unknown function
COG	UHGV-0038192_38	COG0515	N/A	N/A	Serine/threonine protein kinase	N/A
structural_annotation	UHGV-0038192_38	PF13248,MF_00788,NF041910,COG1552	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_41	phrog_2657	121.9	1.4e-36	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038192_41	UniRef90_A0A3E5EKH6	437.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038192_41	411470.RUMGNA_03232	311.0	0	N/A	N/A
Pfam	UHGV-0038192_41	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0038192_41	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0038192_41	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0038192_41	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038192_42	UniRef90_A0A415H5B9	134.0	1.33e-39	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038192_42	1321814.HMPREF9089_00909	62.4	0.00000000000395	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0038192_42	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0038192_43	K22300	46.6	0.00000000000063	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0038192_43	phrog_8	47.9	0.0000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038192_43	UniRef90_A0A415H5A6	310.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038192_43	658655.HMPREF0988_02594	115.0	1.6e-29	Helix-turn-helix	N/A
Pfam	UHGV-0038192_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038192_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0038192_43	PF12844,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0038192_44	phrog_87	85.4	5.4e-25	metallo-protease	other
UniRef90	UHGV-0038192_44	UniRef90_A0A415UM51	317.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0038192_44	742765.HMPREF9457_02093	258.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0038192_44	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0038192_44	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0038192_44	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038192_45	UniRef90_A0A3E5GSH3	140.0	2.92031e-42	Zinc-ribbon domain-containing protein	N/A
Pfam	UHGV-0038192_45	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
eggNOG-mapper	UHGV-0038192_46	411461.DORFOR_00034	258.0	0	N/A	N/A
structural_annotation	UHGV-0038192_46	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-0038192_47	K06400	368.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0038192_47	phrog_95	381.5	0	integrase	integration and excision
UniRef90	UHGV-0038192_47	UniRef90_A0A3E5GSR5	974.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0038192_47	742765.HMPREF9457_02089	966.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0038192_47	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0038192_47	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0038192_47	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0038192_47	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0038192_47	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A