UHGV-0038306 (vOTU-069940)

Viral Genome: UHGV-0038306

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0038306
vOTU ID	vOTU-069940
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_I_16_1564__NODE_1098_length_42671_cov_4.949195
Associated BioSample	SAMEA4765854
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.1 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.05
Jumbo phage	No

Genome content
Genome length (bp)	42,671
GC content	59.41%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	94%
Average CDS length (bps)	743.22
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0038306_1	K21919	79.4	3.8e-23	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0038306_1	phrog_923	81.2	6.5e-24	N/A	unknown function
Pfam	UHGV-0038306_1	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-0038306_1	PF13599,NF000139	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_2	phrog_1891	77.0	3.5e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038306_2	UniRef90_UPI001D013072	119.0	4.93e-30	HNH endonuclease	N/A
Pfam	UHGV-0038306_2	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0038306_2	PF13392	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038306_3	1304866.K413DRAFT_4695	72.8	3.73e-16	N/A	N/A
structural_annotation	UHGV-0038306_3	NF010673	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_4	phrog_801	78.6	9.4e-23	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0038306_4	UniRef90_A0A7G6E7Z0	155.0	0	N/A	N/A
Pfam	UHGV-0038306_4	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0038306_4	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_6	phrog_244	73.0	5.3e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038306_6	UniRef90_A0A841R0Q1	125.0	3.23e-35	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0038306_6	1200557.JHWV01000001_gene280	106.0	3.92e-28	N/A	N/A
structural_annotation	UHGV-0038306_6	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_8	phrog_16304	56.2	6.2e-16	N/A	unknown function
UniRef90	UHGV-0038306_8	UniRef90_UPI001E36D421	108.0	8.12e-26	N/A	N/A
eggNOG-mapper	UHGV-0038306_8	1158610.UC3_02377	100.0	6.83e-23	Helix-turn-helix domain	N/A
Pfam	UHGV-0038306_8	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0038306_8	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0038306_8	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0038306_10	K03111	125.0	9.7e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0038306_10	phrog_44	129.8	2e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038306_10	UniRef90_A0A1Y3SFQ6	160.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0038306_10	1007096.BAGW01000007_gene1922	160.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0038306_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0038306_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0038306_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0038306_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0038306_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_11	phrog_59	125.1	3e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038306_11	UniRef90_UPI001F2E8D32	122.0	5.84e-32	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038306_11	357276.EL88_11520	110.0	5.68e-28	HNH endonuclease domain protein	N/A
PADLOC	UHGV-0038306_11	HEase_00016	80.5	5e-24	homing endonuclease	RM
Pfam	UHGV-0038306_11	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
structural_annotation	UHGV-0038306_11	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_12	phrog_72	56.9	2.7e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038306_12	UniRef90_UPI001F3F3E5C	156.0	1.4013e-45	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0038306_12	1399942.U3PCT8_9CAUD	105.0	2.23e-26	N/A	N/A
structural_annotation	UHGV-0038306_12	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_13	phrog_7838	133.3	1.9e-39	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038306_13	UniRef90_A0A8D9UGW3	212.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0038306_13	742767.HMPREF9456_02052	174.0	0	N/A	N/A
structural_annotation	UHGV-0038306_13	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
Pfam	UHGV-0038306_16	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0038306_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0038306_19	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038306_20	PF13601,TIGR04176	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_24	phrog_8	67.7	2.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038306_24	UniRef90_UPI001E54DE4F	79.7	5.01e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0038306_24	1378168.N510_01712	80.5	9.73e-16	N/A	N/A
Pfam	UHGV-0038306_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-0038306_25	phrog_14556	40.6	0.000000000026	N/A	unknown function
eggNOG-mapper	UHGV-0038306_25	696281.Desru_2490	68.9	0.0000000000295	PFAM nuclease (SNase	N/A
COG	UHGV-0038306_25	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
KOfam	UHGV-0038306_27	K14059	163.0	0	int; integrase	N/A
PHROG	UHGV-0038306_27	phrog_1	159.8	0	integrase	integration and excision
UniRef90	UHGV-0038306_27	UniRef90_A0A2Z4QB94	261.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0038306_27	1514668.JOOA01000001_gene242	130.0	1.3e-32	Phage integrase family	N/A
Pfam	UHGV-0038306_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0038306_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0038306_27	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038306_28	445972.ANACOL_01884	94.0	3.44e-23	N/A	N/A
Pfam	UHGV-0038306_31	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
PHROG	UHGV-0038306_32	phrog_1129	70.6	1.5e-20	holin	lysis
UniRef90	UHGV-0038306_32	UniRef90_A0A316PMB0	115.0	7.47e-32	Enolase	N/A
eggNOG-mapper	UHGV-0038306_32	665956.HMPREF1032_03272	110.0	1.2e-30	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0038306_32	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0038306_32	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0038306_34	K01447	95.5	7.3e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0038306_34	phrog_1794	173.2	0	amidase	lysis
UniRef90	UHGV-0038306_34	UniRef90_A0A1Y4NYC1	199.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0038306_34	658088.HMPREF0987_01102	195.0	0	Ami_2	N/A
Pfam	UHGV-0038306_34	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0038306_34	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0038306_34	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0038306_34	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0038306_34	PF01510,PF18342,MF_04111,NF008758,NF040670,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_37	phrog_22978	676.9	0	N/A	unknown function
UniRef90	UHGV-0038306_37	UniRef90_R5AJI2	736.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038306_37	1410650.JHWL01000003_gene2814	520.0	0	N/A	N/A
Pfam	UHGV-0038306_37	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-0038306_37	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-0038306_38	phrog_2649	52.8	0.0000000000000094	endolysin	lysis
UniRef90	UHGV-0038306_38	UniRef90_A0A1V5RXD7	173.0	0	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0038306_38	1410650.JHWL01000003_gene2815	118.0	1.24e-26	N/A	N/A
Pfam	UHGV-0038306_38	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0038306_38	PF01471,TIGR02869,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0038306_39	K06909	133.4	2.1e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0038306_39	phrog_979	126.4	2.7e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0038306_39	UniRef90_A0A3C0NMI6	600.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0038306_39	1410650.JHWL01000003_gene2834	556.0	0	N/A	N/A
Pfam	UHGV-0038306_39	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0038306_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0038306_39	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_41	phrog_372	257.9	0	tail protein	tail
UniRef90	UHGV-0038306_41	UniRef90_A0A351TJT1	154.0	6.55e-36	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0038306_41	1235802.C823_05263	152.0	6.43e-36	N/A	N/A
Pfam	UHGV-0038306_41	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0038306_41	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0038306_41	PF05895,MF_04116,NF010681,COG3291,COG5608	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038306_42	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_43	phrog_511	205.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0038306_43	1226322.HMPREF1545_00785	315.0	0	N/A	N/A
structural_annotation	UHGV-0038306_43	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_44	phrog_12105	119.4	1.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0038306_44	1226322.HMPREF1545_03850	81.3	4.41e-18	N/A	N/A
PHROG	UHGV-0038306_46	phrog_1357	205.2	0	major head protein	head and packaging
UniRef90	UHGV-0038306_46	UniRef90_A0A2V2CFL5	558.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0038306_46	1410650.JHWL01000003_gene2830	265.0	0	N/A	N/A
NCBIFam	UHGV-0038306_46	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0038306_46	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_47	phrog_13908	171.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0038306_47	1410650.JHWL01000003_gene2831	102.0	4.55e-22	N/A	N/A
KOfam	UHGV-0038306_48	K07584	49.0	0.00000000000012	N/A	N/A
PHROG	UHGV-0038306_48	phrog_4478	50.3	0.000000000000029	peptidase	other
UniRef90	UHGV-0038306_48	UniRef90_A0A357NCE2	61.2	0.000000000633	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0038306_48	706434.HMPREF9429_01254	55.5	0.000000016	Cysteine protease Prp	N/A
Pfam	UHGV-0038306_48	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0038306_48	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038306_48	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0038306_49	phrog_156	308.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0038306_49	1410650.JHWL01000003_gene2833	557.0	0	N/A	N/A
structural_annotation	UHGV-0038306_49	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0038306_54	K15352	48.1	0.00000000000011	pipB2; secreted effector protein PipB2	N/A
PHROG	UHGV-0038306_54	phrog_7713	57.8	6.7e-17	N/A	unknown function
UniRef90	UHGV-0038306_54	UniRef90_UPI001A9B9B76	150.0	6.5861e-44	pentapeptide repeat-containing protein	N/A
Pfam	UHGV-0038306_54	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide