UHGV-0038331 (vOTU-154959)

Viral Genome: UHGV-0038331

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0038331
vOTU ID	vOTU-154959
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_5_RAU0022YZ__NODE_636_length_35756_cov_7.190784
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.66 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9832
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.55
Jumbo phage	No

Genome content
Genome length (bp)	35,756
GC content	55.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	93%
Average CDS length (bps)	571.86
Total tRNA genes	5
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 84.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0038331_2	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_3	phrog_20016	195.5	0	N/A	unknown function
UniRef90	UHGV-0038331_3	UniRef90_A0A285PT46	209.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0038331_3	1226322.HMPREF1545_00077	175.0	0	N/A	N/A
structural_annotation	UHGV-0038331_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_4	phrog_16490	148.8	2.94273e-44	N/A	unknown function
eggNOG-mapper	UHGV-0038331_4	397290.C810_05212	125.0	7.87e-32	N/A	N/A
PHROG	UHGV-0038331_5	phrog_22984	80.3	1.4e-23	N/A	unknown function
PHROG	UHGV-0038331_6	phrog_21718	122.4	2.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-0038331_6	397290.C810_05210	102.0	1.33e-25	N/A	N/A
PHROG	UHGV-0038331_7	phrog_3754	98.7	5.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0038331_7	1235790.C805_00054	114.0	2.79e-31	N/A	N/A
KOfam	UHGV-0038331_9	K23779	53.2	0.000000000000007	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0038331_9	phrog_1373	41.0	0.000000000018	transcriptional regulator	transcription regulation
Pfam	UHGV-0038331_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038331_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0038331_9	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038331_10	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_12	phrog_918	99.2	2e-29	N/A	unknown function
UniRef90	UHGV-0038331_12	UniRef90_UPI000EC62F11	178.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038331_12	1256908.HMPREF0373_00480	135.0	1.50001e-40	N/A	N/A
Pfam	UHGV-0038331_12	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0038331_12	PF19791	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038331_14	UniRef90_UPI0018835F0C	304.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0038331_14	411483.FAEPRAA2165_00757	170.0	1.26117e-44	N/A	N/A
structural_annotation	UHGV-0038331_14	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_15	phrog_15303	121.1	4e-36	N/A	unknown function
Pfam	UHGV-0038331_15	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0038331_17	K07273	153.5	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-0038331_17	phrog_291	115.9	3.9e-34	endolysin	lysis
UniRef90	UHGV-0038331_17	UniRef90_A0A564U0D3	312.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0038331_17	718252.FP2_04890	285.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0038331_17	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0038331_17	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0038331_17	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_18	phrog_10993	256.6	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0038331_18	UniRef90_UPI00082CBED4	244.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038331_18	1121334.KB911071_gene1970	190.0	0	N/A	N/A
Pfam	UHGV-0038331_18	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0038331_18	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_20	phrog_3558	209.1	0	tail protein	tail
eggNOG-mapper	UHGV-0038331_20	1235799.C818_04233	83.2	0.0000000000000429	Prophage endopeptidase tail	N/A
Pfam	UHGV-0038331_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0038331_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0038331_20	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038331_21	UniRef90_UPI001D5BF297	94.7	6.49e-20	mtfA protein	N/A
eggNOG-mapper	UHGV-0038331_21	1111121.HMPREF1247_1241	106.0	4.01e-25	N/A	N/A
structural_annotation	UHGV-0038331_21	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_22	phrog_28775	152.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0038331_22	UniRef90_A0A6N7TLD3	855.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0038331_22	411470.RUMGNA_02228	125.0	9.87e-27	tape measure	N/A
Pfam	UHGV-0038331_22	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0038331_22	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0038331_22	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0038331_22	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_25	phrog_885	67.2	2e-19	major tail protein	tail
eggNOG-mapper	UHGV-0038331_25	1111121.HMPREF1247_0789	160.0	0	N/A	N/A
structural_annotation	UHGV-0038331_25	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038331_26	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_27	phrog_17977	40.5	0.00000000004	N/A	unknown function
UniRef90	UHGV-0038331_27	UniRef90_A0A844DHJ8	119.0	2.31e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0038331_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_29	phrog_544	147.3	9.66896e-44	major head protein	head and packaging
UniRef90	UHGV-0038331_29	UniRef90_R0BKA1	432.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0038331_29	476272.RUMHYD_01776	325.0	0	N/A	N/A
structural_annotation	UHGV-0038331_29	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038331_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_31	phrog_478	126.0	1.6e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0038331_31	UniRef90_A0A373Q857	167.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0038331_31	1111121.HMPREF1247_0834	96.3	7.89e-24	N/A	N/A
PHROG	UHGV-0038331_32	phrog_5	49.4	0.00000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-0038331_32	UniRef90_A0A6N7TNP6	279.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0038331_32	929506.CbC4_1219	86.3	1.89e-19	N/A	N/A
Pfam	UHGV-0038331_32	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0038331_32	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_34	phrog_8680	200.1	0	N/A	unknown function
UniRef90	UHGV-0038331_34	UniRef90_A0A844D688	394.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038331_34	1423790.BN53_04265	173.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0038331_34	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0038331_34	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0038331_34	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_35	phrog_2468	81.8	1.1e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0038331_35	UniRef90_A0A6N7TLR7	624.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0038331_35	1504822.CCNO01000013_gene286	111.0	5.81e-24	cell adhesion	N/A
Pfam	UHGV-0038331_35	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0038331_35	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038331_35	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_36	phrog_64	122.3	1.7e-36	portal protein	head and packaging
UniRef90	UHGV-0038331_36	UniRef90_A0A6N7TNT3	884.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0038331_36	642492.Clole_2764	78.2	0.00000000000129	phage portal protein, SPP1	N/A
Pfam	UHGV-0038331_36	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0038331_36	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0038331_37	K06909	142.0	5.4006e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0038331_37	phrog_10250	173.7	0	N/A	unknown function
UniRef90	UHGV-0038331_37	UniRef90_A0A844D8I4	845.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0038331_37	411490.ANACAC_00783	490.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0038331_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0038331_37	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0038331_37	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0038331_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0038331_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038331_38	UniRef90_UPI0018CC2891	108.0	4.32e-27	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0038331_38	1235790.C805_00037	104.0	1.89e-26	N/A	N/A
structural_annotation	UHGV-0038331_38	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_40	phrog_36	41.0	0.00000000003	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0038331_40	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0038331_41	K01160	60.1	6.5e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0038331_41	phrog_34	61.0	2.1e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038331_41	UniRef90_A0A6N7TND6	223.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0038331_41	875454.BAEW01000002_gene491	134.0	3.77e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0038331_41	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0038331_41	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0038331_41	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_42	phrog_3136	122.2	2.2e-36	N/A	unknown function
UniRef90	UHGV-0038331_42	UniRef90_A0A6N7TMC2	424.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0038331_42	1235792.C808_00630	74.7	0.0000000000000917	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0038331_42	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0038331_42	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0038331_42	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_44	phrog_757	173.5	0	DNA methyltransferase	other
UniRef90	UHGV-0038331_44	UniRef90_A0A6M3LEH2	188.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-0038331_44	1247726.MIM_c10510	156.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0038331_44	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0038331_45	phrog_757	51.5	0.000000000000014	DNA methyltransferase	other
UniRef90	UHGV-0038331_45	UniRef90_A0A7J2R6L5	68.6	0.000000000000023	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0038331_45	748224.HMPREF9436_03069	104.0	1.81e-27	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0038331_45	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0038331_47	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_48	phrog_15768	124.8	7.3e-37	N/A	unknown function
UniRef90	UHGV-0038331_48	UniRef90_A0A844D5V0	172.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0038331_48	748224.HMPREF9436_03357	146.0	4.3e-40	N/A	N/A
Pfam	UHGV-0038331_48	PF19808	N/A	N/A	N/A	DUF6291
UniRef90	UHGV-0038331_49	UniRef90_UPI001CBB85F6	115.0	4.22e-29	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0038331_49	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_50	phrog_2760	185.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038331_50	UniRef90_A0A3A6EAW6	511.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0038331_50	1235794.C811_01355	152.0	1.73004e-41	RecT family	N/A
Pfam	UHGV-0038331_50	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0038331_50	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0038331_50	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0038331_50	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_51	phrog_674	145.2	4.40008e-43	N/A	unknown function
UniRef90	UHGV-0038331_51	UniRef90_A0A3A6E846	486.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038331_51	556268.OFAG_00840	85.1	2.68e-16	N/A	N/A
Pfam	UHGV-0038331_51	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0038331_51	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038331_52	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038331_54	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038331_55	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038331_56	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0038331_58	phrog_27197	89.1	5.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0038331_58	573061.Clocel_3578	58.5	0.00000002	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0038331_58	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0038331_58	NF007410	N/A	N/A	N/A	N/A