UHGV-0038451 (vOTU-044682)

Viral Genome: UHGV-0038451

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0038451
vOTU ID	vOTU-044682
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_B_9_CHE0002SZ__NODE_1328_length_45184_cov_26.242025
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9822
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.18
Jumbo phage	No

Genome content
Genome length (bp)	45,115
GC content	40.99%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	91%
Average CDS length (bps)	593.61
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0038451_1	phrog_1535	473.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0038451_1	UniRef90_A0A173R880	828.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0038451_1	476272.RUMHYD_01785	827.0	0	phage tail tape measure protein	N/A
COG	UHGV-0038451_1	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038451_1	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_2	phrog_1194	85.3	5.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0038451_2	394503.Ccel_3034	56.6	0.0000000142	N/A	N/A
structural_annotation	UHGV-0038451_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_3	phrog_6616	658.7	0	tail protein	tail
UniRef90	UHGV-0038451_3	UniRef90_UPI00156E2BA6	692.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0038451_3	33035.JPJF01000043_gene1002	253.0	0	N/A	N/A
structural_annotation	UHGV-0038451_3	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_4	phrog_18444	74.4	9.3e-22	N/A	unknown function
UniRef90	UHGV-0038451_4	UniRef90_UPI00156E9A45	72.4	0.00000000000000195	peptide chain release factor 2	N/A
UniRef90	UHGV-0038451_5	UniRef90_A0A1C6L0B1	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038451_5	742733.HMPREF9469_05016	188.0	0	N/A	N/A
Pfam	UHGV-0038451_5	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0038451_5	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_6	phrog_14030	82.3	4.4e-25	N/A	unknown function
UniRef90	UHGV-0038451_6	UniRef90_A0A6N9LGV5	466.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0038451_6	1123075.AUDP01000020_gene1533	324.0	0	pathogenesis	N/A
Pfam	UHGV-0038451_6	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0038451_6	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-0038451_6	PF08230,PF19087	N/A	N/A	N/A	N/A
KOfam	UHGV-0038451_7	K14059	102.4	6.2e-30	int; integrase	N/A
PHROG	UHGV-0038451_7	phrog_1	124.0	1.4e-36	integrase	integration and excision
UniRef90	UHGV-0038451_7	UniRef90_A0A6L8SXX0	764.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0038451_7	1235792.C808_05256	365.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0038451_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0038451_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0038451_7	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0038451_8	K07448	130.6	1.2e-38	mrr; restriction system protein	N/A
PHROG	UHGV-0038451_8	phrog_19856	42.1	0.0000000000081	N/A	unknown function
UniRef90	UHGV-0038451_8	UniRef90_A0A416IWX8	198.0	0	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-0038451_8	1235790.C805_00010	150.0	4.98021e-42	Restriction endonuclease	N/A
PADLOC	UHGV-0038451_8	ZorD1_00005	62.4	5.9e-18	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0038451_8	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0038451_8	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
PHROG	UHGV-0038451_9	phrog_2967	58.3	1.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038451_9	UniRef90_A0A416SLU4	251.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038451_9	476272.RUMHYD_03305	78.2	6.14e-16	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0038451_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038451_9	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0038451_9	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0038451_10	K22300	44.5	0.0000000000028	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0038451_10	UniRef90_A0A412ELD4	137.0	4.85998e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038451_10	1235801.C822_00106	57.8	0.000000000208	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0038451_10	retron_type_VI_hth_cluster2_1	40.5	0.000000000069	N/A	Retron
Pfam	UHGV-0038451_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038451_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0038451_10	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038451_12	PF13601,TIGR04176	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_13	phrog_463	200.5	0	anti-repressor	transcription regulation
UniRef90	UHGV-0038451_13	UniRef90_A0A3A6GZT3	357.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-0038451_13	411490.ANACAC_00813	204.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0038451_13	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0038451_13	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0038451_13	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0038451_13	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_14	phrog_6058	55.6	5.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0038451_14	742733.HMPREF9469_05094	70.9	0.0000000000000101	N/A	N/A
AcrCatalog	UHGV-0038451_15	cluster_17974	62.4	1.31e-16	NA	N/A
structural_annotation	UHGV-0038451_19	NF001645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038451_20	UniRef90_R6RDX0	78.2	1.06e-17	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-0038451_21	phrog_2872	244.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038451_21	UniRef90_UPI0015715A02	382.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0038451_21	1256908.HMPREF0373_00658	345.0	0	AAA domain	N/A
Pfam	UHGV-0038451_21	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0038451_21	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_22	phrog_18107	252.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0038451_22	1256908.HMPREF0373_00659	236.0	0	N/A	N/A
structural_annotation	UHGV-0038451_22	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_23	phrog_3490	158.4	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038451_23	UniRef90_R9KEE1	262.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038451_23	1256908.HMPREF0373_00660	263.0	0	N/A	N/A
Pfam	UHGV-0038451_23	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0038451_23	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0038451_24	K02316	64.2	2e-18	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0038451_24	phrog_11992	154.2	0	N/A	unknown function
UniRef90	UHGV-0038451_24	UniRef90_A0A395X7I4	286.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0038451_24	476272.RUMHYD_01741	188.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0038451_24	drt-UG29	55.4	5.6e-16	DRT	DRT
Pfam	UHGV-0038451_24	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0038451_24	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0038451_24	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_25	phrog_8841	556.5	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038451_25	UniRef90_A0A412EL97	1231.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038451_25	476272.RUMHYD_01742	775.0	0	N/A	N/A
Pfam	UHGV-0038451_25	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0038451_25	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0038451_25	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038451_25	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038451_27	UniRef90_A0A6L8SWV5	168.0	0	Winged helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0038451_27	PF01726,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0038451_30	K00390	99.4	1.6e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0038451_30	phrog_424	127.3	9e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0038451_30	UniRef90_A0A412EKX4	529.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-0038451_30	1232452.BAIB02000007_gene1640	410.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0038451_30	BrxP_00001	71.0	8.1e-22	BrxP	BREX
Pfam	UHGV-0038451_30	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0038451_30	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0038451_30	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_41	phrog_10714	49.7	0.00000000000006	N/A	unknown function
KOfam	UHGV-0038451_44	K06909	378.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0038451_44	phrog_3717	146.6	1.09301e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0038451_44	UniRef90_A0A6L8SYJ6	984.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0038451_44	33035.JPJF01000106_gene3136	530.0	0	Terminase small subunit	N/A
Pfam	UHGV-0038451_44	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0038451_44	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0038451_44	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0038451_44	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0038451_44	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038451_45	411473.RUMCAL_02525	143.0	5.53513e-43	N/A	N/A
PHROG	UHGV-0038451_46	phrog_533	286.7	0	portal protein	head and packaging
UniRef90	UHGV-0038451_46	UniRef90_A0A1C6CDM8	709.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0038451_46	33035.JPJF01000106_gene3135	534.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0038451_46	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_47	phrog_581	271.4	0	minor head protein	head and packaging
UniRef90	UHGV-0038451_47	UniRef90_A0A395X791	749.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0038451_47	33035.JPJF01000106_gene3134	414.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0038451_47	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0038451_47	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038451_47	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_48	phrog_3754	115.4	3.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-0038451_48	476272.RUMHYD_01764	172.0	0	N/A	N/A
UniRef90	UHGV-0038451_49	UniRef90_A0A395X7A4	179.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0038451_49	476272.RUMHYD_01766	122.0	7.54e-35	N/A	N/A
UniRef90	UHGV-0038451_51	UniRef90_A0A1C5PJW7	90.9	4.98e-23	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-0038451_51	1410625.JHWK01000002_gene45	69.7	0.00000000000000278	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0038451_51	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0038451_51	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038451_53	411470.RUMGNA_03785	59.7	0.00000000156	N/A	N/A
AcrCatalog	UHGV-0038451_53	cluster_32378	68.6	2.13e-17	NA	N/A
PHROG	UHGV-0038451_54	phrog_21718	133.3	1e-39	N/A	unknown function
eggNOG-mapper	UHGV-0038451_54	476272.RUMHYD_01768	130.0	1.13e-36	N/A	N/A
PHROG	UHGV-0038451_55	phrog_22984	96.5	1.5e-28	N/A	unknown function
PHROG	UHGV-0038451_56	phrog_16490	189.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0038451_56	397290.C810_01328	188.0	0	N/A	N/A
PHROG	UHGV-0038451_57	phrog_20016	205.1	0	N/A	unknown function
UniRef90	UHGV-0038451_57	UniRef90_A0A285PT46	170.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0038451_57	397290.C810_05214	187.0	0	N/A	N/A
structural_annotation	UHGV-0038451_57	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_58	phrog_28802	226.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0038451_58	476272.RUMHYD_01772	205.0	0	N/A	N/A
PHROG	UHGV-0038451_59	phrog_194	65.4	1.1e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0038451_59	UniRef90_UPI001D14C9C8	193.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0038451_59	476272.RUMHYD_01775	196.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0038451_59	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0038451_60	phrog_544	163.1	0	major head protein	head and packaging
UniRef90	UHGV-0038451_60	UniRef90_A0A395X7A1	668.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0038451_60	1232453.BAIF02000011_gene3359	390.0	0	N/A	N/A
Pfam	UHGV-0038451_60	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0038451_60	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_61	phrog_541	97.9	5.7e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0038451_61	476272.RUMHYD_01778	115.0	1.61e-30	N/A	N/A
PHROG	UHGV-0038451_62	phrog_774	68.9	7.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0038451_62	397290.C810_05225	141.0	9.99126e-43	N/A	N/A
PHROG	UHGV-0038451_63	phrog_1129	75.8	3.7e-22	holin	lysis
UniRef90	UHGV-0038451_63	UniRef90_A0A395X7B2	173.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0038451_63	411461.DORFOR_00721	113.0	7.19e-32	N/A	N/A
Pfam	UHGV-0038451_63	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0038451_63	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_64	phrog_3366	97.6	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0038451_64	476272.RUMHYD_01779	150.0	2.66247e-44	N/A	N/A
structural_annotation	UHGV-0038451_64	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_65	phrog_556	66.9	1.7e-19	minor head protein	head and packaging
UniRef90	UHGV-0038451_65	UniRef90_UPI000E4989EB	293.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0038451_65	476272.RUMHYD_01780	159.0	0	N/A	N/A
Pfam	UHGV-0038451_65	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0038451_65	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_66	phrog_3266	94.5	8.2e-28	tail completion	connector
eggNOG-mapper	UHGV-0038451_66	476272.RUMHYD_01781	150.0	4.48416e-44	N/A	N/A
structural_annotation	UHGV-0038451_66	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_67	phrog_3099	131.5	5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0038451_67	411902.CLOBOL_00129	174.0	0	N/A	N/A
structural_annotation	UHGV-0038451_67	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_68	phrog_11299	65.0	1.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0038451_68	33035.JPJF01000106_gene3125	53.1	0.000000691	N/A	N/A
structural_annotation	UHGV-0038451_68	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0038451_69	phrog_706	130.7	9.7e-39	N/A	unknown function
UniRef90	UHGV-0038451_69	UniRef90_UPI001BAD00AD	208.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0038451_69	411459.RUMOBE_01383	344.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0038451_69	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0038451_69	PF06854	N/A	N/A	N/A	N/A