UHGV-0038561 (vOTU-132837)

Viral Genome: UHGV-0038561

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0038561
vOTU ID	vOTU-132837
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_J_1_RAJ1015YZ__NODE_3685_length_34961_cov_34.070978
Associated BioSample	SAMEA4969165
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.91 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.05
Jumbo phage	No

Genome content
Genome length (bp)	34,961
GC content	53.63%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	91%
Average CDS length (bps)	542.03
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0038561_1	UniRef90_A0A6M1KN62	120.0	1.67e-24	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0038561_1	1160721.RBI_II00528	139.0	2.66e-31	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0038561_1	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
PHROG	UHGV-0038561_3	phrog_18646	58.7	8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0038561_3	1121936.AUHI01000017_gene750	50.1	0.00000446	N/A	N/A
PHROG	UHGV-0038561_4	phrog_885	124.6	5.4e-37	major tail protein	tail
UniRef90	UHGV-0038561_4	UniRef90_A0A101Y2E4	122.0	1.72e-30	Big_5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038561_4	411465.PEPMIC_00741	142.0	8.87e-40	N/A	N/A
structural_annotation	UHGV-0038561_4	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_5	phrog_17405	42.3	0.000000000012	head protein	head and packaging
UniRef90	UHGV-0038561_5	UniRef90_A0A415JI88	61.6	0.000000000961	N/A	N/A
structural_annotation	UHGV-0038561_5	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_6	phrog_17977	76.6	2.5e-22	N/A	unknown function
UniRef90	UHGV-0038561_6	UniRef90_UPI00141211AB	149.0	3.22299e-44	head-tail adaptor protein	N/A
Pfam	UHGV-0038561_6	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0038561_6	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_8	phrog_544	129.4	2.7e-38	major head protein	head and packaging
UniRef90	UHGV-0038561_8	UniRef90_A0A1C6B5R0	326.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0038561_8	476272.RUMHYD_01776	313.0	0	N/A	N/A
structural_annotation	UHGV-0038561_8	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038561_9	UniRef90_A0A174AAF6	86.3	1.3e-17	Clp R domain-containing protein	N/A
structural_annotation	UHGV-0038561_9	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_11	phrog_595	106.1	3.4e-31	head maturation protease	head and packaging
UniRef90	UHGV-0038561_11	UniRef90_A0A3A9EHQ6	263.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0038561_11	1504822.CCNO01000013_gene286	171.0	2.8026e-45	cell adhesion	N/A
Pfam	UHGV-0038561_11	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0038561_11	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0038561_11	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038561_11	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_14	phrog_8680	192.2	0	N/A	unknown function
UniRef90	UHGV-0038561_14	UniRef90_A0A373V619	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038561_14	411470.RUMGNA_02208	192.0	0	N/A	N/A
Pfam	UHGV-0038561_14	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0038561_14	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_15	phrog_64	168.4	0	portal protein	head and packaging
UniRef90	UHGV-0038561_15	UniRef90_A0A285PU84	426.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0038561_15	673376.F2VHW1_9CAUD	201.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0038561_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0038561_15	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0038561_16	K06909	91.2	1.1e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0038561_16	phrog_10250	124.4	8.3e-37	N/A	unknown function
UniRef90	UHGV-0038561_16	UniRef90_A0A2N2CXF0	412.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0038561_16	1032362.F6K8Q6_9CAUD	326.0	0	DNA packaging	N/A
Pfam	UHGV-0038561_16	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
structural_annotation	UHGV-0038561_16	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_17	phrog_1206	49.7	0.000000000000044	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0038561_17	349966.DJ58_2661	55.5	0.000000868	Terminase small subunit	N/A
COG	UHGV-0038561_17	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0038561_18	phrog_10302	57.0	2.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0038561_18	1423724.BAMM01000023_gene1918	50.4	0.000000135	N/A	N/A
KOfam	UHGV-0038561_19	K03497	66.5	5.3e-19	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0038561_19	phrog_12517	285.7	0	N/A	unknown function
UniRef90	UHGV-0038561_19	UniRef90_A0A0R1TYW4	377.0	0	ParB-like protein	N/A
eggNOG-mapper	UHGV-0038561_19	1035196.HMPREF9998_01728	363.0	0	N/A	N/A
PADLOC	UHGV-0038561_19	MTase_II_00015	94.9	8.2e-28	Type II methyltransferase	RM
Pfam	UHGV-0038561_19	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0038561_19	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0038561_19	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0038561_19	PF02195,PF01170,MF_02015,MF_01872,TIGR01177,TIGR04285,COG1041,COG5119	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038561_20	PF07374,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038561_21	TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038561_24	UniRef90_UPI00054386A4	62.8	0.000000000247	nucleotide pyrophosphohydrolase	N/A
COG	UHGV-0038561_24	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0038561_24	COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_25	phrog_111	121.3	6.6e-36	DNA methyltransferase	other
UniRef90	UHGV-0038561_25	UniRef90_A0A1G8EL36	145.0	1.92959e-42	Site-specific DNA-methyltransferase (Adenine-specific)	N/A
eggNOG-mapper	UHGV-0038561_25	1567011.A0A0A7RUD1_9VIRU	143.0	1.60028e-42	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0038561_25	oMTase_00015	135.5	3.8e-40	orphan methyltransferase	RM
Pfam	UHGV-0038561_25	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0038561_25	PF05869,TIGR01712	N/A	N/A	N/A	N/A
KOfam	UHGV-0038561_26	K03111	164.2	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0038561_26	phrog_44	158.4	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038561_26	UniRef90_A0A1Q6Q4S4	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0038561_26	1042163.BRLA_c031440	133.0	6.51e-38	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0038561_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0038561_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0038561_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0038561_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0038561_26	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_27	phrog_824	149.9	7.00649e-45	N/A	unknown function
UniRef90	UHGV-0038561_27	UniRef90_A0A645FWL0	157.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0038561_27	768710.DesyoDRAFT_5233	132.0	4.71e-38	VRR-NUC domain	N/A
Pfam	UHGV-0038561_27	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0038561_28	K02314	291.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0038561_28	phrog_19	260.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038561_28	UniRef90_A0A517Z5C3	186.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0038561_28	1321786.HMPREF1992_01477	177.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0038561_28	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0038561_28	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0038561_28	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0038561_28	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_29	phrog_16304	40.9	0.0000000000098	N/A	unknown function
Pfam	UHGV-0038561_29	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0038561_29	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0038561_31	K07455	178.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0038561_31	phrog_148	180.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038561_31	UniRef90_A0A7X7Z0P1	309.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0038561_31	1158602.I590_02957	190.0	0	RecT family	N/A
Pfam	UHGV-0038561_31	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0038561_31	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0038561_31	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0038561_31	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_32	phrog_434	292.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038561_32	UniRef90_A0A7C6PS99	237.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0038561_32	997296.PB1_16439	226.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0038561_32	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0038561_32	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0038561_32	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0038561_32	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038561_35	PF20432,MF_00535,NF040507,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0038561_36	K07729	66.0	8.2e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0038561_36	phrog_3	47.3	0.00000000000087	transcriptional repressor	transcription regulation
UniRef90	UHGV-0038561_36	UniRef90_A0A3M1YWL0	53.1	0.000000265	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038561_36	1121931.AUHG01000003_gene900	53.9	0.0000000781	N/A	N/A
Pfam	UHGV-0038561_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038561_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0038561_36	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0038561_37	K22300	46.5	0.00000000000077	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0038561_37	phrog_8	49.5	0.0000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038561_37	UniRef90_UPI00067B6EA0	57.0	0.0000000559	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0038561_37	742765.HMPREF9457_00586	52.0	0.000000632	Helix-turn-helix domain	N/A
Pfam	UHGV-0038561_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038561_37	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0038561_38	phrog_31229	109.8	1.5e-32	N/A	unknown function
UniRef90	UHGV-0038561_38	UniRef90_A0A0C1RAJ6	105.0	6e-27	Putative membrane protein	N/A
eggNOG-mapper	UHGV-0038561_38	1280692.AUJL01000009_gene2925	107.0	1.57e-28	N/A	N/A
structural_annotation	UHGV-0038561_39	PF06865,MF_01537,NF007875,COG3123	N/A	N/A	N/A	N/A
KOfam	UHGV-0038561_41	K14059	135.1	8.99999e-40	int; integrase	N/A
PHROG	UHGV-0038561_41	phrog_1	123.0	3.2e-36	integrase	integration and excision
UniRef90	UHGV-0038561_41	UniRef90_UPI0005D1DBC9	140.0	4.72e-35	site-specific integrase	N/A
eggNOG-mapper	UHGV-0038561_41	1514668.JOOA01000001_gene242	140.0	7.92e-36	Phage integrase family	N/A
Pfam	UHGV-0038561_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0038561_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0038561_41	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_44	phrog_20016	210.8	0	N/A	unknown function
UniRef90	UHGV-0038561_44	UniRef90_A0A285PT46	191.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0038561_44	397290.C810_05214	189.0	0	N/A	N/A
structural_annotation	UHGV-0038561_44	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_45	phrog_16490	224.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0038561_45	1408437.JNJN01000043_gene803	191.0	0	N/A	N/A
PHROG	UHGV-0038561_46	phrog_22984	69.5	2.2e-20	N/A	unknown function
PHROG	UHGV-0038561_47	phrog_21718	114.3	8.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0038561_47	397290.C810_05210	104.0	3.23e-26	N/A	N/A
PHROG	UHGV-0038561_48	phrog_3754	90.5	2.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0038561_48	476272.RUMHYD_01764	163.0	0	N/A	N/A
structural_annotation	UHGV-0038561_49	PF10013,COG4338	N/A	N/A	N/A	N/A
KOfam	UHGV-0038561_50	K22299	52.6	0.000000000000012	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0038561_50	phrog_8	59.3	5.8e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0038561_50	1514668.JOOA01000002_gene2045	52.4	0.00000373	Helix-turn-helix domain	N/A
Pfam	UHGV-0038561_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038561_50	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0038561_50	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_51	phrog_18108	79.2	4.7e-23	N/A	unknown function
UniRef90	UHGV-0038561_51	UniRef90_UPI0018C3A07F	80.5	0.00000000000000753	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0038561_51	1193128.A200_07674	60.8	0.0000000115	N/A	N/A
AcrCatalog	UHGV-0038561_51	cluster_73909	133.0	5.77994e-41	NA	N/A
structural_annotation	UHGV-0038561_51	PF07443	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038561_53	1125712.HMPREF1316_1548	124.0	3.77e-35	N/A	N/A
Pfam	UHGV-0038561_56	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0038561_56	PF21694,TIGR02985	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_57	phrog_6918	79.9	2.3e-23	holin	lysis
UniRef90	UHGV-0038561_57	UniRef90_A0A6N8H4C3	89.4	7.27e-21	Holin	N/A
eggNOG-mapper	UHGV-0038561_57	1236976.JCM16418_1614	89.7	6.72e-22	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0038561_57	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0038561_57	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0038561_58	phrog_37604	96.4	2.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0038561_58	457412.RSAG_01109	89.7	8.53e-21	N/A	N/A
eggNOG-mapper	UHGV-0038561_59	1444306.JFZC01000099_gene1162	55.1	0.000000281	Bacterial SH3 domain	N/A
Pfam	UHGV-0038561_59	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0038561_59	COG3103	N/A	N/A	N/A	N/A