UHGV-0038926 (vOTU-100105)

Viral Genome: UHGV-0038926

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0038926
vOTU ID	vOTU-100105
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_2_2185__NODE_2727_length_22695_cov_7.067734
Associated BioSample	SAMEA4766186
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.66 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.2
Jumbo phage	No

Genome content
Genome length (bp)	22,695
GC content	53.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	94%
Average CDS length (bps)	442.63
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0038926_1	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-0038926_4	693746.OBV_18220	54.3	0.0000000158	N/A	N/A
PHROG	UHGV-0038926_5	phrog_18725	90.8	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0038926_5	693746.OBV_18220	127.0	6.08e-34	N/A	N/A
structural_annotation	UHGV-0038926_6	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
Pfam	UHGV-0038926_7	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-0038926_7	PF07484	N/A	N/A	N/A	N/A
PHROG	UHGV-0038926_10	phrog_6918	98.9	3e-29	holin	lysis
UniRef90	UHGV-0038926_10	UniRef90_A0A316QCY7	102.0	2.45e-26	Holin	N/A
eggNOG-mapper	UHGV-0038926_10	1297617.JPJD01000020_gene301	101.0	1.71e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0038926_10	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0038926_10	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038926_11	UniRef90_UPI00164EA432	223.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038926_11	525254.HMPREF0072_1273	222.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0038926_11	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0038926_11	NF033743	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038926_12	UniRef90_A0A1C6JAI6	68.6	0.000000000000177	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0038926_12	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
Pfam	UHGV-0038926_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038926_14	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
UniRef90	UHGV-0038926_15	UniRef90_UPI00164AED9E	86.3	1.26e-19	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0038926_15	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0038926_15	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0038926_16	phrog_3754	95.8	4.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0038926_16	476272.RUMHYD_01764	156.0	0	N/A	N/A
PHROG	UHGV-0038926_17	phrog_21718	86.9	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0038926_17	397290.C810_05210	60.5	0.00000000333	N/A	N/A
PHROG	UHGV-0038926_18	phrog_22984	76.9	5.8e-23	N/A	unknown function
PHROG	UHGV-0038926_19	phrog_16490	138.2	1.19993e-41	N/A	unknown function
eggNOG-mapper	UHGV-0038926_19	1408437.JNJN01000043_gene803	130.0	2.33e-34	N/A	N/A
PHROG	UHGV-0038926_20	phrog_20016	186.3	0	N/A	unknown function
UniRef90	UHGV-0038926_20	UniRef90_A0A285PT46	191.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0038926_20	1226322.HMPREF1545_00077	164.0	0	N/A	N/A
structural_annotation	UHGV-0038926_20	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038926_21	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038926_22	1226322.HMPREF1545_00079	91.7	2.49e-22	N/A	N/A
KOfam	UHGV-0038926_23	K14059	128.8	7.1e-38	int; integrase	N/A
PHROG	UHGV-0038926_23	phrog_1	148.9	4.06377e-44	integrase	integration and excision
UniRef90	UHGV-0038926_23	UniRef90_A0A810Q0Y2	409.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0038926_23	693746.OBV_43340	362.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0038926_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0038926_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0038926_23	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0038926_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038926_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0038926_24	PF12844	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038926_26	1298920.KI911353_gene413	137.0	1.58e-37	N/A	N/A
Pfam	UHGV-0038926_26	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-0038926_29	PF13601,TIGR04176,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0038926_30	K22299	40.6	0.000000000049	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0038926_30	phrog_18248	56.4	3.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038926_30	UniRef90_A0A1G7UMC4	67.8	0.00000000000134	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0038926_30	1589749.A0A0B5A036_9CAUD	67.0	0.0000000000137	sequence-specific DNA binding	N/A
Pfam	UHGV-0038926_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0038926_30	PF01381,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0038926_31	phrog_18248	53.9	0.0000000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038926_31	UniRef90_A0A371AUE2	75.9	2.66e-16	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038926_31	1449336.JQLO01000001_gene2237	64.3	0.00000000000215	Transcriptional regulator, Cro CI family	N/A
Pfam	UHGV-0038926_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038926_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0038926_31	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038926_32	1235835.C814_03153	55.8	0.0000000018	N/A	N/A
structural_annotation	UHGV-0038926_32	PF09035,NF040990	N/A	N/A	N/A	N/A
PHROG	UHGV-0038926_37	phrog_124	114.5	9e-34	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038926_37	UniRef90_A0A2Z4QBI4	388.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-0038926_37	445972.ANACOL_00146	223.0	0	AAA domain	N/A
Pfam	UHGV-0038926_37	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0038926_37	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-0038926_37	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038926_38	UniRef90_A0A2Z4QA33	239.0	0	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-0038926_38	718252.FP2_01050	129.0	9.24e-35	N/A	N/A
structural_annotation	UHGV-0038926_38	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0038926_39	phrog_378	96.0	4.5e-28	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038926_39	UniRef90_UPI001E43F9BA	76.3	0.0000000000000133	N/A	N/A
eggNOG-mapper	UHGV-0038926_39	1423732.BALS01000134_gene393	60.8	0.00000000239	N/A	N/A
Pfam	UHGV-0038926_39	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0038926_39	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-0038926_40	phrog_2149	75.0	1.2e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0038926_40	742740.HMPREF9474_03117	179.0	0	N/A	N/A
structural_annotation	UHGV-0038926_40	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0038926_42	K00390	107.9	1e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0038926_42	phrog_424	118.7	4.1e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0038926_42	UniRef90_UPI001D087498	427.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0038926_42	1408437.JNJN01000032_gene2312	333.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0038926_42	BrxP_00001	69.7	2.5e-20	BrxP	BREX
Pfam	UHGV-0038926_42	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0038926_42	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0038926_42	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0038926_45	phrog_3136	131.0	4e-39	N/A	unknown function
UniRef90	UHGV-0038926_45	UniRef90_A0A3D0HBD2	113.0	5.76e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0038926_45	198628.Dda3937_01763	53.1	0.000000519	ASCH	N/A
Pfam	UHGV-0038926_45	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0038926_45	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0038926_45	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0038926_46	phrog_355	59.7	4.8e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038926_46	UniRef90_A0A413FXK8	108.0	4.88e-29	N/A	N/A
eggNOG-mapper	UHGV-0038926_46	573061.Clocel_3558	78.6	1.17e-17	N/A	N/A
Pfam	UHGV-0038926_46	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0038926_46	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0038926_46	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0038926_47	phrog_38832	44.3	0.0000000000000037	N/A	unknown function
eggNOG-mapper	UHGV-0038926_47	665956.HMPREF1032_00143	63.9	0.000000000205	N/A	N/A
structural_annotation	UHGV-0038926_47	PF11717,TIGR02450	N/A	N/A	N/A	N/A