UHGV-0039060 (vOTU-088969)

Viral Genome: UHGV-0039060

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0039060
vOTU ID	vOTU-088969
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_23_THA0068JZ__NODE_1681_length_22128_cov_2.990250
Associated BioSample	SAMEA4969184
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.82 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9782
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.03
Jumbo phage	No

Genome content
Genome length (bp)	22,128
GC content	30.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	92%
Average CDS length (bps)	581.57
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0039060_1	K06400	49.0	0.00000000000008	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0039060_1	phrog_95	55.3	8.8e-16	integrase	integration and excision
UniRef90	UHGV-0039060_1	UniRef90_A0A3D6BHE2	70.9	0.0000000000000072	Resolvase (Fragment)	N/A
eggNOG-mapper	UHGV-0039060_1	1414720.CBYM010000006_gene1187	123.0	1.48e-32	resolvase	N/A
Pfam	UHGV-0039060_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0039060_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
KOfam	UHGV-0039060_3	K07729	65.0	1.4e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0039060_3	phrog_8	97.3	1.8e-28	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039060_3	UniRef90_UPI0004867CC9	108.0	3.65e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039060_3	1211817.CCAT010000003_gene272	95.9	9.31e-24	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0039060_3	retron_type_VI_hth_cluster2_1	50.9	0.000000000000021	N/A	Retron
Pfam	UHGV-0039060_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039060_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0039060_4	UniRef90_UPI00084D082C	52.4	0.000000222	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0039060_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039060_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0039060_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0039060_5	K22299	52.2	0.000000000000013	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0039060_5	phrog_3	44.4	0.0000000000064	transcriptional repressor	transcription regulation
UniRef90	UHGV-0039060_5	UniRef90_UPI00085BBE37	82.0	4.15e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039060_5	1487921.DP68_08680	77.8	3.48e-18	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0039060_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039060_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0039060_5	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_7	phrog_373	170.6	0	anti-repressor	transcription regulation
UniRef90	UHGV-0039060_7	UniRef90_UPI0018AC2428	339.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039060_7	1414720.CBYM010000002_gene582	315.0	0	ORF6C domain	N/A
Pfam	UHGV-0039060_7	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0039060_7	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0039060_7	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0039060_7	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0039060_7	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039060_8	UniRef90_A0A1C6HV05	59.3	0.00000000021	Spo0E like sporulation regulatory protein	N/A
Pfam	UHGV-0039060_8	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
structural_annotation	UHGV-0039060_8	PF09388	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_9	phrog_10469	304.1	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039060_9	UniRef90_A0A1C6JID6	451.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-0039060_9	1414720.CBYM010000001_gene675	329.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0039060_9	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0039060_9	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0039060_9	PF09681,PF09524,TIGR01714,TIGR02220,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0039060_10	K02315	141.4	7.90052e-42	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0039060_10	phrog_50	148.1	6.30584e-44	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039060_10	UniRef90_A0A1C6JJ89	438.0	0	DNA replication protein	N/A
eggNOG-mapper	UHGV-0039060_10	1414720.CBYM010000001_gene676	405.0	0	PFAM IstB-like ATP binding protein	N/A
Pfam	UHGV-0039060_10	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0039060_10	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0039060_10	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0039060_12	K03111	116.9	2.8e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0039060_12	phrog_44	120.6	1.3e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039060_12	UniRef90_UPI0018AC5EC3	194.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0039060_12	1414720.CBYM010000001_gene680	178.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0039060_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0039060_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0039060_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0039060_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0039060_12	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_13	phrog_323	98.4	1.90002e-41	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039060_13	UniRef90_A0A410PPK7	226.0	0	HTH myb-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0039060_13	1196322.A370_05734	239.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-0039060_13	PF13921	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-bind_6
Pfam	UHGV-0039060_13	PF07750	N/A	N/A	GcrA cell cycle regulator	GcrA
dbAPIS	UHGV-0039060_13	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0039060_13	PF01710,NF040595,COG5147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039060_15	1391647.AVSV01000022_gene2542	125.0	9.48e-36	N/A	N/A
UniRef90	UHGV-0039060_16	UniRef90_UPI0018A8EB18	186.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039060_16	1414720.CBYM010000040_gene1638	269.0	0	N/A	N/A
structural_annotation	UHGV-0039060_16	PF04545,MF_00683,NF008895	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_17	phrog_3928	43.4	0.0000000000045	N/A	unknown function
eggNOG-mapper	UHGV-0039060_17	1414720.CBYM010000040_gene1639	95.9	8.29e-26	N/A	N/A
KOfam	UHGV-0039060_18	K04763	76.7	3.2e-22	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0039060_18	phrog_216	137.9	4.80001e-41	integrase	integration and excision
UniRef90	UHGV-0039060_18	UniRef90_A0A133MQ26	218.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0039060_18	1414720.CBYM010000040_gene1640	204.0	0	Integrase	N/A
Pfam	UHGV-0039060_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0039060_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0039060_18	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0039060_20	K07451	45.6	0.0000000000013	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0039060_20	phrog_4581	106.1	2.7e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0039060_20	UniRef90_UPI0004BB51A8	472.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0039060_20	1414720.CBYM010000040_gene1642	472.0	0	HNH nucleases	N/A
Pfam	UHGV-0039060_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0039060_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0039060_20	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_21	phrog_1066	120.7	6.1e-36	N/A	unknown function
eggNOG-mapper	UHGV-0039060_21	1414720.CBYM010000040_gene1643	226.0	0	N/A	N/A
structural_annotation	UHGV-0039060_21	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_22	phrog_9	375.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0039060_22	UniRef90_UPI0004B93F61	1138.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0039060_22	1414720.CBYM010000040_gene1644	1116.0	0	Terminase	N/A
Pfam	UHGV-0039060_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0039060_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0039060_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0039060_22	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_23	phrog_12	187.5	0	portal protein	head and packaging
UniRef90	UHGV-0039060_23	UniRef90_UPI0005AACF6F	1019.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0039060_23	1414720.CBYM010000040_gene1645	1019.0	0	Portal protein	N/A
Pfam	UHGV-0039060_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0039060_23	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
KOfam	UHGV-0039060_24	K01358	147.1	1.4013e-43	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0039060_24	phrog_94	225.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0039060_24	UniRef90_UPI0004B9B3A2	483.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0039060_24	1414720.CBYM010000040_gene1646	481.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0039060_24	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0039060_24	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0039060_24	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_25	phrog_10	155.8	0	major head protein	head and packaging
UniRef90	UHGV-0039060_25	UniRef90_UPI0004B1CF04	815.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0039060_25	1414720.CBYM010000040_gene1647	815.0	0	Phage capsid family	N/A
Pfam	UHGV-0039060_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0039060_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0039060_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0039060_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_26	phrog_5223	106.9	7e-32	neck protein	connector
UniRef90	UHGV-0039060_26	UniRef90_UPI0004B59526	182.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0039060_26	1414720.CBYM010000040_gene1648	182.0	0	N/A	N/A
NCBIFam	UHGV-0039060_26	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0039060_27	phrog_1951	101.6	4e-30	head-tail adaptor	connector
UniRef90	UHGV-0039060_27	UniRef90_UPI0004ACD6EB	203.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0039060_27	1414720.CBYM010000040_gene1649	203.0	0	head-tail adaptor	N/A
Pfam	UHGV-0039060_27	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0039060_27	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0039060_27	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0039060_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039060_28	UniRef90_A0A133N6J9	238.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0039060_28	1414720.CBYM010000040_gene1650	295.0	0	N/A	N/A
structural_annotation	UHGV-0039060_28	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_29	phrog_957	90.9	8.6e-27	head protein	head and packaging
UniRef90	UHGV-0039060_29	UniRef90_UPI0004B43D30	250.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039060_29	1414720.CBYM010000040_gene1651	250.0	0	N/A	N/A
Pfam	UHGV-0039060_29	PF11367	N/A	N/A	N/A	DUF3168
structural_annotation	UHGV-0039060_29	PF11367,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_30	phrog_885	99.7	2.4e-29	major tail protein	tail
eggNOG-mapper	UHGV-0039060_30	1414720.CBYM010000040_gene1652	330.0	0	N/A	N/A
structural_annotation	UHGV-0039060_30	PF09393,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039060_31	1414720.CBYM010000040_gene1653	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039060_32	1414720.CBYM010000040_gene1654	145.0	2.10195e-44	N/A	N/A
PHROG	UHGV-0039060_33	phrog_991	277.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0039060_33	UniRef90_UPI0004AC99C3	1509.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0039060_33	1414720.CBYM010000040_gene1655	1509.0	0	tail tape measure protein	N/A
Pfam	UHGV-0039060_33	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0039060_33	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0039060_33	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0039060_34	phrog_33	67.2	3.3e-20	distal tail protein Dit	tail
UniRef90	UHGV-0039060_34	UniRef90_UPI0004ACC375	383.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0039060_34	1414720.CBYM010000040_gene1656	383.0	0	PFAM Phage tail protein	N/A
Pfam	UHGV-0039060_34	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0039060_34	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0039060_34	PF20195,PF21621,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0039060_35	phrog_3558	298.9	0	tail protein	tail
UniRef90	UHGV-0039060_35	UniRef90_A0A8I0AD31	434.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0039060_35	1414720.CBYM010000040_gene1657	308.0	0	Phage minor structural protein, N-terminal	N/A
Pfam	UHGV-0039060_35	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0039060_35	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0039060_35	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0039060_35	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A