UHGV-0039069 (vOTU-088977)

Viral Genome: UHGV-0039069

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0039069
vOTU ID	vOTU-088977
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_D_5_THA1074JZ__NODE_1906_length_32011_cov_7.474698
Associated BioSample	SAMEA4969196
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.85 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9757
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.19
Jumbo phage	No

Genome content
Genome length (bp)	32,011
GC content	43.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	92%
Average CDS length (bps)	578.41
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0039069_1	K14059	118.4	8.9e-35	int; integrase	N/A
PHROG	UHGV-0039069_1	phrog_1	115.9	3.9e-34	integrase	integration and excision
UniRef90	UHGV-0039069_1	UniRef90_A0A843H3C9	452.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0039069_1	397291.C804_00897	349.0	0	Phage integrase family	N/A
Pfam	UHGV-0039069_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0039069_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0039069_1	PF00589,PF02920,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0039069_3	K04763	169.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0039069_3	phrog_1	140.5	1.49995e-41	integrase	integration and excision
UniRef90	UHGV-0039069_3	UniRef90_UPI00084915C6	295.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0039069_3	411468.CLOSCI_00297	233.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0039069_3	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0039069_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0039069_3	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0039069_3	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_7	phrog_59	64.7	9.4e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039069_7	UniRef90_R7CC66	326.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039069_7	1410650.JHWL01000037_gene604	165.0	0	N/A	N/A
PADLOC	UHGV-0039069_7	HEase_00016	42.5	0.00000000000028	homing endonuclease	RM
Pfam	UHGV-0039069_7	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
structural_annotation	UHGV-0039069_7	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0039069_8	K00571	88.6	6.4e-26	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0039069_8	phrog_16	225.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039069_8	UniRef90_A0A173S745	1578.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-0039069_8	1298920.KI911353_gene2709	1399.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0039069_8	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0039069_8	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0039069_8	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0039069_8	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_10	phrog_424	67.0	2.5e-19	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0039069_10	UniRef90_A0A2H4JC51	426.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0039069_10	693746.OBV_43240	528.0	0	N/A	N/A
COG	UHGV-0039069_10	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0039069_10	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_12	phrog_874	175.5	0	N/A	unknown function
UniRef90	UHGV-0039069_12	UniRef90_A0A4P6LRJ9	187.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0039069_12	411468.CLOSCI_00298	238.0	0	N/A	N/A
structural_annotation	UHGV-0039069_12	PF04266,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_13	phrog_8684	76.3	8.1e-24	N/A	unknown function
UniRef90	UHGV-0039069_13	UniRef90_A0A3D2KEV6	95.5	6.45e-23	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0039069_13	1235799.C818_02660	65.5	0.00000000000711	YopX protein	N/A
Pfam	UHGV-0039069_13	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0039069_13	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_14	phrog_31107	65.3	7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0039069_15	1235793.C809_02213	246.0	0	N/A	N/A
PHROG	UHGV-0039069_17	phrog_26384	44.6	0.0000000000021	N/A	unknown function
structural_annotation	UHGV-0039069_19	PF09871,NF004670	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_21	phrog_15768	93.3	3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0039069_21	886379.AEWI01000001_gene1766	143.0	1.88e-39	N/A	N/A
structural_annotation	UHGV-0039069_21	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_22	phrog_3490	80.5	6.3e-25	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039069_22	UniRef90_A0A396Q1E1	100.0	4.02e-22	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039069_22	1298920.KI911353_gene2715	308.0	0	N/A	N/A
structural_annotation	UHGV-0039069_22	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039069_23	1298920.KI911353_gene2716	84.7	3.41e-19	N/A	N/A
structural_annotation	UHGV-0039069_23	PF19962,COG1579	N/A	N/A	N/A	N/A
KOfam	UHGV-0039069_24	K03111	122.4	5.6e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0039069_24	phrog_44	121.5	6.9e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039069_24	UniRef90_A0A1C5QNW6	232.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0039069_24	585394.RHOM_16640	209.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0039069_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0039069_24	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0039069_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0039069_24	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0039069_24	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0039069_25	K06167	51.3	5.3e-16	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0039069_25	phrog_392	169.0	0	metal-dependent hydrolase	other
UniRef90	UHGV-0039069_25	UniRef90_A0A1Q6KA45	382.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0039069_25	1443122.Z958_05735	164.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0039069_25	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
Pfam	UHGV-0039069_25	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
dbAPIS	UHGV-0039069_25	APIS066	N/A	N/A	N/A	N/A
COG	UHGV-0039069_25	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0039069_25	PF02112,MF_00457,NF041851,COG2220	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_26	phrog_17662	227.4	0	N/A	unknown function
UniRef90	UHGV-0039069_26	UniRef90_UPI001899FDF7	246.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-0039069_26	742735.HMPREF9467_00856	292.0	0	N/A	N/A
structural_annotation	UHGV-0039069_26	MF_03128,TIGR02495,COG2896	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_27	phrog_25456	76.2	2.5e-22	N/A	unknown function
KOfam	UHGV-0039069_28	K03091	130.0	2.6e-38	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-0039069_28	phrog_351	74.7	2.2e-34	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0039069_28	UniRef90_R9KKY4	145.0	8.99998e-41	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0039069_28	397290.C810_01455	145.0	1.51004e-41	sigma factor activity	N/A
Pfam	UHGV-0039069_28	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0039069_28	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-0039069_28	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0039069_28	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0039069_28	PF08281,PF04542,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_29	phrog_478	120.8	6.2e-36	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0039069_29	UniRef90_R6E548	114.0	2.52e-30	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0039069_29	1111121.HMPREF1247_0834	94.4	5.35e-23	N/A	N/A
KOfam	UHGV-0039069_30	K07455	147.6	1.20512e-43	recT; recombination protein RecT	N/A
PHROG	UHGV-0039069_30	phrog_148	170.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039069_30	UniRef90_A0A3E2WWD7	348.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0039069_30	1298920.KI911353_gene2727	325.0	0	RecT family	N/A
Pfam	UHGV-0039069_30	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0039069_30	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0039069_30	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0039069_30	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039069_31	PF02237,MF_00257,NF037951,COG4013	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039069_32	1232453.BAIF02000057_gene1135	69.7	0.00000000000624	N/A	N/A
KOfam	UHGV-0039069_33	K19171	65.4	4.2e-19	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0039069_33	phrog_77	166.7	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039069_33	UniRef90_A0A413Z5U6	490.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039069_33	1232453.BAIF02000057_gene1134	516.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0039069_33	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0039069_33	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
KOfam	UHGV-0039069_34	K07699	85.3	7e-25	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
PHROG	UHGV-0039069_34	phrog_24603	98.6	3.8e-29	N/A	unknown function
UniRef90	UHGV-0039069_34	UniRef90_F7KUX5	127.0	9.04e-36	Spo0A_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0039069_34	658088.HMPREF0987_02126	98.2	1.83e-24	response regulator	N/A
Pfam	UHGV-0039069_34	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-0039069_34	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0039069_34	PF08769,TIGR02875	N/A	N/A	N/A	N/A
KOfam	UHGV-0039069_35	K03111	46.8	6e-16	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0039069_35	phrog_26861	131.6	3e-39	N/A	unknown function
UniRef90	UHGV-0039069_35	UniRef90_A0A3A8YW33	240.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0039069_35	1232452.BAIB02000009_gene1990	237.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0039069_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0039069_35	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0039069_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0039069_35	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0039069_37	K08309	40.7	0.000000000031	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-0039069_37	phrog_19890	75.9	4.6e-22	N/A	unknown function
UniRef90	UHGV-0039069_37	UniRef90_A0A352SFF8	269.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0039069_37	1410650.JHWL01000003_gene2854	149.0	1.38729e-43	lytic transglycosylase activity	N/A
Pfam	UHGV-0039069_37	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0039069_37	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0039069_37	PF01464,MF_01381,NF011856,COG0741	N/A	N/A	N/A	N/A
KOfam	UHGV-0039069_38	K07741	127.5	2.3e-37	antB; anti-repressor protein	N/A
PHROG	UHGV-0039069_38	phrog_130	236.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0039069_38	UniRef90_R6V613	293.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-0039069_38	1232452.BAIB02000007_gene1603	268.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0039069_38	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0039069_38	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0039069_38	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0039069_38	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_39	phrog_8	48.9	0.00000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039069_39	UniRef90_R5TR53	87.4	1.71e-21	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0039069_39	411460.RUMTOR_02057	77.4	2.66e-18	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0039069_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0039069_39	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_40	phrog_2967	47.6	0.0000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039069_40	UniRef90_A0A317UDF6	102.0	8.84e-26	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0039069_40	1232449.BAHV02000016_gene1846	65.9	0.0000000000278	Peptidase S24-like	N/A
Pfam	UHGV-0039069_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039069_40	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0039069_40	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0039069_41	K07451	60.7	9.5e-18	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0039069_41	phrog_16726	62.7	2.5e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039069_41	UniRef90_UPI001C10B06D	395.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0039069_41	386415.NT01CX_1757	347.0	0	HNH endonuclease	N/A
Pfam	UHGV-0039069_41	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0039069_41	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0039069_42	K07705	49.2	0.000000000000073	lytT, lytR; two-component system, LytTR family, response regulator LytT	N/A
PHROG	UHGV-0039069_42	phrog_8810	42.3	0.0000000000038	N/A	unknown function
UniRef90	UHGV-0039069_42	UniRef90_A0A3A9ALJ6	63.5	0.0000000214	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-0039069_42	1235800.C819_02291	65.9	0.000000000411	LytTr DNA-binding domain	N/A
Pfam	UHGV-0039069_42	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-0039069_42	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-0039069_42	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_46	phrog_2649	44.0	0.0000000000033	endolysin	lysis
UniRef90	UHGV-0039069_46	UniRef90_R6C8U0	277.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0039069_46	411902.CLOBOL_00116	117.0	8.42e-29	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	N/A
Pfam	UHGV-0039069_46	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0039069_46	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0039069_46	COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_47	phrog_199	79.5	3.5e-23	holin	lysis
UniRef90	UHGV-0039069_47	UniRef90_A0A3D4HRA5	192.0	0	Holin	N/A
eggNOG-mapper	UHGV-0039069_47	1469948.JPNB01000001_gene536	185.0	0	TIGRFAM toxin secretion phage lysis holin	N/A
Pfam	UHGV-0039069_47	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0039069_47	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0039069_47	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0039069_47	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0039069_48	phrog_17180	60.1	2.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0039069_48	1268240.ATFI01000012_gene1337	59.3	0.00000000569	N/A	N/A
structural_annotation	UHGV-0039069_48	PF14282	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039069_50	744980.TRICHSKD4_1837	51.2	0.00000344	N/A	N/A