UHGV-0039201 (vOTU-044733)

Viral Genome: UHGV-0039201

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0039201
vOTU ID	vOTU-044733
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_17_RAJ0019YZ__NODE_1295_length_43320_cov_15.811761
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.66
Jumbo phage	No

Genome content
Genome length (bp)	43,244
GC content	46.98%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	74
CDS density	90%
Average CDS length (bps)	527.19
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0039201_1	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
eggNOG-mapper	UHGV-0039201_2	1562701.BBOF01000011_gene43	52.4	0.000000166	N/A	N/A
PHROG	UHGV-0039201_4	phrog_7839	75.8	4.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0039201_4	1410650.JHWL01000003_gene2844	99.4	1e-24	N/A	N/A
UniRef90	UHGV-0039201_6	UniRef90_A0A3R6TD05	118.0	1.58e-31	N/A	N/A
eggNOG-mapper	UHGV-0039201_6	1232453.BAIF02000057_gene1153	50.4	0.00000575	N/A	N/A
Pfam	UHGV-0039201_6	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0039201_6	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_8	phrog_757	178.6	0	DNA methyltransferase	other
UniRef90	UHGV-0039201_8	UniRef90_A0A349YFI2	240.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0039201_8	1095750.HMPREF9970_0173	262.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0039201_8	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0039201_8	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039201_9	PF09870,COG4466	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_11	phrog_15768	146.6	4.76441e-44	N/A	unknown function
UniRef90	UHGV-0039201_11	UniRef90_A0A373CU07	252.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039201_11	33035.JPJF01000071_gene4467	87.8	4.49e-18	N/A	N/A
AcrCatalog	UHGV-0039201_11	cluster_38323	111.0	8.14e-32	NA	N/A
Pfam	UHGV-0039201_11	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0039201_11	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_12	phrog_244	68.6	1.2e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0039201_12	742740.HMPREF9474_03491	182.0	0	N/A	N/A
structural_annotation	UHGV-0039201_12	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_13	phrog_2113	51.8	0.00000000000001	N/A	unknown function
structural_annotation	UHGV-0039201_13	PF21715,TIGR04176,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_14	phrog_7566	90.5	1.2e-26	N/A	unknown function
UniRef90	UHGV-0039201_14	UniRef90_A0A417GG52	139.0	5.40004e-41	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0039201_14	742733.HMPREF9469_01847	53.5	0.0000000577	N/A	N/A
PHROG	UHGV-0039201_15	phrog_72	43.0	0.0000000000048	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0039201_15	411490.ANACAC_00804	133.0	7.24e-37	N/A	N/A
structural_annotation	UHGV-0039201_15	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_16	phrog_155	124.6	7.5e-37	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039201_16	UniRef90_A0A1C6CBK6	369.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0039201_16	1304866.K413DRAFT_1196	231.0	0	ERF superfamily	N/A
Pfam	UHGV-0039201_16	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0039201_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0039201_16	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039201_19	UniRef90_UPI001BC23C38	85.5	1.26e-19	Nitrogenase molybdenum-iron protein subunit beta	N/A
structural_annotation	UHGV-0039201_23	PF13744,MF_00535,NF010465,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039201_25	UniRef90_A0A1C5ZE56	95.5	1.42e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0039201_25	397291.C804_01600	85.9	1.43e-21	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0039201_25	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0039201_25	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0039201_26	K22300	59.0	1.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0039201_26	phrog_8	50.6	0.000000000000042	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039201_26	UniRef90_A0A1C6C9V1	160.0	0	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039201_26	665956.HMPREF1032_00148	90.5	1.06e-21	N/A	N/A
Pfam	UHGV-0039201_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039201_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0039201_26	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0039201_27	K07448	109.1	2.6e-32	mrr; restriction system protein	N/A
UniRef90	UHGV-0039201_27	UniRef90_A0A1C6C9M8	670.0	0	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-0039201_27	1121115.AXVN01000017_gene270	140.0	5.04e-37	Restriction endonuclease	N/A
PADLOC	UHGV-0039201_27	ZorD1_00005	52.7	0.0000000000000038	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0039201_27	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0039201_27	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
KOfam	UHGV-0039201_28	K14059	146.7	2.90069e-43	int; integrase	N/A
PHROG	UHGV-0039201_28	phrog_1	144.1	1.3004e-42	integrase	integration and excision
UniRef90	UHGV-0039201_28	UniRef90_A0A1C6C970	716.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0039201_28	1304866.K413DRAFT_1180	386.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0039201_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0039201_28	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0039201_28	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0039201_29	K17733	152.5	2.8026e-45	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0039201_29	phrog_2649	135.0	6.7e-40	endolysin	lysis
UniRef90	UHGV-0039201_29	UniRef90_A0A1C5W0J0	499.0	0	Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	N/A
eggNOG-mapper	UHGV-0039201_29	742733.HMPREF9469_01368	324.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
AcrCatalog	UHGV-0039201_29	cluster_9940	79.7	1.62e-20	NA	N/A
Pfam	UHGV-0039201_29	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0039201_29	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0039201_29	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_30	phrog_13589	50.8	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0039201_30	632245.CLP_1288	69.7	0.000000000145	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0039201_30	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0039201_31	phrog_918	100.4	8.6e-30	N/A	unknown function
UniRef90	UHGV-0039201_31	UniRef90_UPI00156D5D02	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039201_31	1256908.HMPREF0373_00480	154.0	0	N/A	N/A
Pfam	UHGV-0039201_31	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0039201_31	PF19791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039201_34	411902.CLOBOL_00122	117.0	1.07e-31	N/A	N/A
PHROG	UHGV-0039201_35	phrog_18725	71.2	1.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0039201_35	411902.CLOBOL_00123	154.0	0	N/A	N/A
PHROG	UHGV-0039201_36	phrog_32744	172.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0039201_36	411902.CLOBOL_00124	697.0	0	N/A	N/A
structural_annotation	UHGV-0039201_36	PF14594,PF21114,MF_00813,NF033848,TIGR02961,COG4379,COG4266	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_37	phrog_1194	59.0	7.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0039201_37	411902.CLOBOL_00125	139.0	9.35002e-41	N/A	N/A
structural_annotation	UHGV-0039201_37	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_38	phrog_1535	202.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0039201_38	UniRef90_A0A1C6CG40	1228.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0039201_38	411459.RUMOBE_01384	220.0	0	phage tail tape measure protein	N/A
COG	UHGV-0039201_38	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0039201_39	phrog_706	121.3	7.5e-36	N/A	unknown function
UniRef90	UHGV-0039201_39	UniRef90_A0A1C6CG51	359.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0039201_39	411459.RUMOBE_01383	185.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0039201_39	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0039201_39	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_40	phrog_11299	73.4	3.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0039201_40	476272.RUMHYD_01783	81.6	9.38e-18	N/A	N/A
structural_annotation	UHGV-0039201_40	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_41	phrog_3099	118.9	3.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-0039201_41	33035.JPJF01000106_gene3126	187.0	0	N/A	N/A
structural_annotation	UHGV-0039201_41	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_42	phrog_3266	88.5	6.2e-26	tail completion	connector
eggNOG-mapper	UHGV-0039201_42	476272.RUMHYD_01781	141.0	1.34001e-40	N/A	N/A
structural_annotation	UHGV-0039201_42	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_43	phrog_556	56.6	4.6e-17	minor head protein	head and packaging
UniRef90	UHGV-0039201_43	UniRef90_UPI0008B4CFF0	229.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0039201_43	476272.RUMHYD_01780	175.0	0	N/A	N/A
structural_annotation	UHGV-0039201_43	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_44	phrog_3366	103.6	1.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0039201_44	476272.RUMHYD_01779	152.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0039201_44	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_45	phrog_8680	226.4	0	N/A	unknown function
UniRef90	UHGV-0039201_45	UniRef90_UPI001C0F342A	388.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039201_45	411470.RUMGNA_02208	278.0	0	N/A	N/A
Pfam	UHGV-0039201_45	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0039201_45	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_47	phrog_18218	139.1	1.10002e-41	N/A	unknown function
UniRef90	UHGV-0039201_47	UniRef90_A0A8D9PGR5	154.0	0	Holin	N/A
eggNOG-mapper	UHGV-0039201_47	411902.CLOBOL_03424	82.8	4.44e-19	N/A	N/A
structural_annotation	UHGV-0039201_47	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_48	phrog_355	55.1	0.0000000000000013	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039201_48	UniRef90_A0A415G5B2	152.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039201_48	397290.C810_05229	140.0	3.15993e-42	N/A	N/A
Pfam	UHGV-0039201_48	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0039201_48	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_50	phrog_541	98.7	2.7e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0039201_50	476272.RUMHYD_01778	114.0	4.41e-30	N/A	N/A
PHROG	UHGV-0039201_51	phrog_247	220.8	0	major head protein	head and packaging
UniRef90	UHGV-0039201_51	UniRef90_UPI001BA5448B	288.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0039201_51	33035.JPJF01000106_gene3132	558.0	0	N/A	N/A
structural_annotation	UHGV-0039201_51	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039201_52	UniRef90_UPI001C0EBA51	278.0	0	phage scaffolding protein	N/A
structural_annotation	UHGV-0039201_54	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_55	phrog_20016	75.3	6e-22	N/A	unknown function
UniRef90	UHGV-0039201_55	UniRef90_A0A316MV88	233.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0039201_55	397290.C810_05214	67.0	0.00000000000364	N/A	N/A
structural_annotation	UHGV-0039201_55	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039201_57	476272.RUMHYD_01770	79.3	0.00000000000000331	N/A	N/A
PHROG	UHGV-0039201_59	phrog_21718	67.2	3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0039201_59	1235790.C805_00058	93.6	5.68e-22	N/A	N/A
UniRef90	UHGV-0039201_60	UniRef90_A0A417UWY7	121.0	1.73e-33	CTP synthase	N/A
eggNOG-mapper	UHGV-0039201_60	476272.RUMHYD_01766	68.6	0.000000000000131	N/A	N/A
PHROG	UHGV-0039201_62	phrog_581	266.4	0	minor head protein	head and packaging
UniRef90	UHGV-0039201_62	UniRef90_A0A1C6CDG2	788.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0039201_62	33035.JPJF01000106_gene3134	440.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0039201_62	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0039201_62	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039201_62	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_63	phrog_533	277.0	0	portal protein	head and packaging
UniRef90	UHGV-0039201_63	UniRef90_A0A1C6CDM8	909.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0039201_63	33035.JPJF01000106_gene3135	509.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0039201_63	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0039201_64	K06909	430.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039201_64	phrog_3717	172.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0039201_64	UniRef90_A0A1C6CDG5	704.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0039201_64	33035.JPJF01000106_gene3136	647.0	0	Terminase small subunit	N/A
Pfam	UHGV-0039201_64	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0039201_64	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0039201_64	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0039201_64	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039201_64	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0039201_65	K00571	113.0	3.4e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0039201_65	phrog_498	348.5	0	DNA methyltransferase	other
UniRef90	UHGV-0039201_65	UniRef90_A0A0Q8YU11	382.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0039201_65	1423758.BN55_01455	303.0	0	DNA methylase	N/A
PADLOC	UHGV-0039201_65	MTase_II_00015	259.8	0	Type II methyltransferase	RM
Pfam	UHGV-0039201_65	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0039201_65	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0039201_65	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0039201_65	PF01555,PF02195,NF010253,TIGR00180,COG0863,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_73	phrog_30343	183.5	0	N/A	unknown function
UniRef90	UHGV-0039201_73	UniRef90_A0A417A5J9	99.4	1.69e-23	N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0039201_73	397291.C804_00939	177.0	0	N/A	N/A
structural_annotation	UHGV-0039201_73	PF11039,MF_02210,TIGR03585,COG1670	N/A	N/A	N/A	N/A
PHROG	UHGV-0039201_74	phrog_9298	322.8	0	radical SAM domain protein	other
UniRef90	UHGV-0039201_74	UniRef90_A0A6L6XJP0	506.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-0039201_74	1235793.C809_02647	389.0	0	N/A	N/A
COG	UHGV-0039201_74	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0039201_74	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A