UHGV-0039259 (vOTU-110642)

Viral Genome: UHGV-0039259

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0039259
vOTU ID	vOTU-110642
Representative Genome?	Yes
Source	GPD
Original genome ID	ivig_1906
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.9 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.68
Jumbo phage	No

Genome content
Genome length (bp)	25,267
GC content	45.10%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	90%
Average CDS length (bps)	517.57
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0039259_1	K17733	149.7	1.68156e-44	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0039259_1	phrog_2649	133.6	1.6e-39	endolysin	lysis
UniRef90	UHGV-0039259_1	UniRef90_A0A416FC87	464.0	0	Peptidase_M15_4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039259_1	397290.C810_03258	213.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0039259_1	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
Pfam	UHGV-0039259_1	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-0039259_1	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0039259_1	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
PHROG	UHGV-0039259_2	phrog_1048	164.9	0	N/A	unknown function
UniRef90	UHGV-0039259_2	UniRef90_A0A416L221	342.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039259_2	457412.RSAG_01107	246.0	0	N/A	N/A
Pfam	UHGV-0039259_2	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0039259_2	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0039259_2	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0039259_3	phrog_355	67.9	1.2e-19	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039259_3	UniRef90_A0A417BWH3	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039259_3	97138.C820_00250	124.0	1.31e-35	N/A	N/A
Pfam	UHGV-0039259_3	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0039259_3	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0039259_4	phrog_1129	77.9	7.5e-23	holin	lysis
UniRef90	UHGV-0039259_4	UniRef90_A0A3R6U6I1	163.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0039259_4	742740.HMPREF9474_03522	103.0	4.63e-28	N/A	N/A
Pfam	UHGV-0039259_4	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0039259_4	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0039259_5	phrog_4105	101.4	4.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0039259_5	657322.FPR_27220	108.0	3.51e-29	N/A	N/A
UniRef90	UHGV-0039259_7	UniRef90_A0A3R6QNF9	69.7	0.00000000000000314	ASCH domain-containing protein	N/A
NCBIFam	UHGV-0039259_7	NF040910.1	N/A	N/A	CD1375 family protein	N/A
PHROG	UHGV-0039259_8	phrog_12931	81.4	9.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0039259_8	1298920.KI911353_gene2672	79.0	7.97e-17	N/A	N/A
PHROG	UHGV-0039259_9	phrog_25888	116.0	1.3e-34	N/A	unknown function
UniRef90	UHGV-0039259_9	UniRef90_A0A3R6NAE3	765.0	0	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0039259_9	1304866.K413DRAFT_3052	68.6	0.000000000835	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0039259_9	PF09458	N/A	N/A	H-type lectin domain	H_lectin
COG	UHGV-0039259_9	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0039259_10	phrog_15239	88.3	4.8e-26	N/A	unknown function
PHROG	UHGV-0039259_11	phrog_1357	290.4	0	major head protein	head and packaging
UniRef90	UHGV-0039259_11	UniRef90_A0A3R6K0X0	644.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0039259_11	1321782.HMPREF1986_00347	335.0	0	N/A	N/A
Pfam	UHGV-0039259_11	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0039259_11	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0039259_11	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0039259_12	phrog_13908	262.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0039259_12	1410650.JHWL01000003_gene2831	86.7	1.29e-16	N/A	N/A
KOfam	UHGV-0039259_13	K07584	60.6	3e-17	N/A	N/A
PHROG	UHGV-0039259_13	phrog_4478	64.6	1.2e-18	peptidase	other
UniRef90	UHGV-0039259_13	UniRef90_A0A416FC13	202.0	0	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0039259_13	273068.TTE0914	52.8	0.000000168	Cysteine protease Prp	N/A
Pfam	UHGV-0039259_13	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0039259_13	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039259_13	NF011130,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0039259_14	phrog_156	336.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0039259_14	748224.HMPREF9436_01396	508.0	0	N/A	N/A
structural_annotation	UHGV-0039259_14	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0039259_15	K06909	117.7	1.2e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039259_15	phrog_979	201.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0039259_15	UniRef90_A0A3R6NVR9	1022.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0039259_15	748224.HMPREF9436_02548	625.0	0	Terminase-like family	N/A
Pfam	UHGV-0039259_15	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0039259_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039259_15	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0039259_16	phrog_309	122.2	2.8e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0039259_16	UniRef90_UPI001A9AF3C1	343.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039259_16	1567014.A0A0A7RTX1_9VIRU	117.0	5.26e-31	N/A	N/A
Pfam	UHGV-0039259_16	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0039259_16	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0039259_18	phrog_3584	180.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0039259_18	1321782.HMPREF1986_00335	221.0	0	N/A	N/A
structural_annotation	UHGV-0039259_18	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0039259_19	K04763	192.3	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0039259_19	phrog_1	149.6	2.66247e-44	integrase	integration and excision
UniRef90	UHGV-0039259_19	UniRef90_A0A2S6HJ77	408.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0039259_19	1298920.KI911353_gene2699	393.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0039259_19	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0039259_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0039259_19	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0039259_19	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0039259_20	phrog_9822	58.9	8.4e-17	N/A	unknown function
PHROG	UHGV-0039259_21	phrog_424	74.8	1.2e-21	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0039259_21	742733.HMPREF9469_00916	446.0	0	sulfate reduction	N/A
COG	UHGV-0039259_21	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0039259_21	PF01507,MF_01161,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0039259_22	phrog_954	191.8	0	DNA methyltransferase	other
UniRef90	UHGV-0039259_22	UniRef90_A0A3R6K0Q5	373.0	0	Class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0039259_22	1280698.AUJS01000007_gene1028	278.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0039259_22	MTase_II_00074	190.3	0	Type II methyltransferase	RM
Pfam	UHGV-0039259_22	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0039259_22	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0039259_22	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
KOfam	UHGV-0039259_25	K03798	106.5	2.3e-31	ftsH, hflB; cell division protease FtsH [EC:3.4.24.-]	N/A
PHROG	UHGV-0039259_25	phrog_3757	191.3	0	N/A	unknown function
UniRef90	UHGV-0039259_25	UniRef90_A0A416FC36	550.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0039259_25	1235802.C823_01035	211.0	0	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-0039259_25	IetA_00002	174.3	0	NA	ietAS
Pfam	UHGV-0039259_25	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-0039259_25	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
structural_annotation	UHGV-0039259_25	PF00004,MF_00553,TIGR01242,COG1222	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039259_27	UniRef90_A0A3R6K7W7	263.0	0	Sigma70_r4_2 domain-containing protein	N/A
Pfam	UHGV-0039259_27	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0039259_27	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0039259_27	PF13384,PF17516,NF001074,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039259_30	UniRef90_A0A416FC75	163.0	0	TRASH domain-containing protein	N/A
PHROG	UHGV-0039259_31	phrog_7566	113.7	6.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-0039259_31	411902.CLOBOL_05695	105.0	1.24e-28	N/A	N/A
PHROG	UHGV-0039259_32	phrog_17690	68.9	4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0039259_32	1235798.C817_03495	77.4	5.11e-16	N/A	N/A
KOfam	UHGV-0039259_33	K03469	46.1	0.0000000000009	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0039259_33	phrog_531	48.4	0.00000000000015	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039259_33	UniRef90_A0A417BW93	257.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039259_33	742740.HMPREF9474_04320	94.0	3.76e-23	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0039259_33	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0039259_33	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0039259_33	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039259_36	UniRef90_A0A3R6SFF1	160.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0039259_36	394503.Ccel_1846	53.5	0.0000000254	TIGRFAM DNA binding domain, excisionase family	N/A
structural_annotation	UHGV-0039259_36	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0039259_41	K18830	70.7	2.4e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0039259_41	phrog_8	54.8	0.0000000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039259_41	UniRef90_A0A3R6KRX8	296.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039259_41	1235802.C823_01933	124.0	1.17e-34	Helix-turn-helix domain	N/A
Pfam	UHGV-0039259_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039259_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0039259_41	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0039259_43	K14059	235.8	0	int; integrase	N/A
PHROG	UHGV-0039259_43	phrog_1	185.0	0	integrase	integration and excision
UniRef90	UHGV-0039259_43	UniRef90_A0A3R6SUQ8	881.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0039259_43	397288.C806_02995	258.0	0	Phage integrase family	N/A
Pfam	UHGV-0039259_43	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0039259_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0039259_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0039259_43	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A