UHGV-0039323 (vOTU-119786)

Viral Genome: UHGV-0039323

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0039323
vOTU ID	vOTU-119786
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_B_19_THA0061JZ__NODE_1031_length_24178_cov_6.356043
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.38 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.5
Jumbo phage	No

Genome content
Genome length (bp)	24,178
GC content	39.68%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	90%
Average CDS length (bps)	464.87
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0039323_1	phrog_20016	205.6	0	N/A	unknown function
UniRef90	UHGV-0039323_1	UniRef90_A0A285PT46	170.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0039323_1	397290.C810_05214	190.0	0	N/A	N/A
structural_annotation	UHGV-0039323_1	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0039323_2	phrog_16490	181.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0039323_2	397290.C810_01328	191.0	0	N/A	N/A
PHROG	UHGV-0039323_3	phrog_22984	95.1	4e-28	N/A	unknown function
PHROG	UHGV-0039323_4	phrog_21718	127.3	7.9e-38	N/A	unknown function
eggNOG-mapper	UHGV-0039323_4	476272.RUMHYD_01768	119.0	2.75e-32	N/A	N/A
KOfam	UHGV-0039323_5	K07726	42.8	0.0000000000087	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0039323_5	phrog_2104	41.0	0.000000000029	N/A	unknown function
UniRef90	UHGV-0039323_5	UniRef90_A0A412ELA1	90.9	5.28e-23	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039323_5	1410625.JHWK01000002_gene45	69.3	0.00000000000000429	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0039323_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039323_5	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0039323_5	PF15731,NF007481,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039323_7	UniRef90_A0A395X7A4	168.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0039323_7	476272.RUMHYD_01766	123.0	2.63e-35	N/A	N/A
PHROG	UHGV-0039323_8	phrog_3754	114.0	9.8e-34	N/A	unknown function
eggNOG-mapper	UHGV-0039323_8	476272.RUMHYD_01764	181.0	0	N/A	N/A
PHROG	UHGV-0039323_9	phrog_581	252.9	0	minor head protein	head and packaging
UniRef90	UHGV-0039323_9	UniRef90_A0A395X791	693.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0039323_9	33035.JPJF01000106_gene3134	382.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0039323_9	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0039323_9	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039323_9	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0039323_11	phrog_533	278.8	0	portal protein	head and packaging
UniRef90	UHGV-0039323_11	UniRef90_A0A1C6CDM8	702.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0039323_11	33035.JPJF01000106_gene3135	536.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0039323_11	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0039323_13	K06909	328.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039323_13	phrog_3717	154.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0039323_13	UniRef90_A0A395X9V4	782.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0039323_13	33035.JPJF01000106_gene3136	416.0	0	Terminase small subunit	N/A
Pfam	UHGV-0039323_13	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0039323_13	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0039323_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039323_13	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0039323_14	phrog_606	88.1	9.3e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0039323_14	UniRef90_UPI00195648BB	173.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0039323_14	397290.C810_05185	174.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0039323_14	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0039323_14	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039323_15	411459.RUMOBE_01385	50.1	0.00000148	N/A	N/A
AcrCatalog	UHGV-0039323_15	cluster_11670	77.8	8.64e-22	NA	N/A
PHROG	UHGV-0039323_16	phrog_2245	78.3	9.2e-23	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0039323_16	UniRef90_A0A373NRP8	144.0	2.20004e-42	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0039323_16	326426.Bbr_0313	69.7	0.00000000000147	N/A	N/A
Pfam	UHGV-0039323_16	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
structural_annotation	UHGV-0039323_16	PF12643,NF001613,COG0140	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039323_19	476272.RUMHYD_03348	52.4	0.00000292	N/A	N/A
KOfam	UHGV-0039323_23	K00571	122.1	5.8e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0039323_23	phrog_23224	156.0	0	DNA methyltransferase	other
UniRef90	UHGV-0039323_23	UniRef90_A0A3R6JG61	376.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0039323_23	981335.G4W934_9CAUD	216.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-0039323_23	MTase_II_00172	107.1	2.1e-31	Type II methyltransferase	RM
Pfam	UHGV-0039323_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0039323_23	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039323_24	UniRef90_A0A373P4I4	64.7	0.00000000000722	Winged helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0039323_24	PF01726,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0039323_25	phrog_17690	112.9	1.5e-33	N/A	unknown function
eggNOG-mapper	UHGV-0039323_25	476272.RUMHYD_03925	154.0	0	N/A	N/A
KOfam	UHGV-0039323_27	K15255	243.0	0	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	N/A
PHROG	UHGV-0039323_27	phrog_325	265.8	0	Dda-like helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039323_27	UniRef90_A0A2V2D011	883.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0039323_27	1504823.CCMM01000005_gene215	265.0	0	Caulimovirus viroplasmin	N/A
PADLOC	UHGV-0039323_27	cluster10	52.6	4.4e-18	RecD_0_IVD	CRISPR-CAS
Pfam	UHGV-0039323_27	PF05970	N/A	N/A	PIF1-like helicase	PIF1
COG	UHGV-0039323_27	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0039323_27	PF05970,PF16277,MF_03176,TIGR01448,COG0507	N/A	N/A	N/A	N/A
PHROG	UHGV-0039323_28	phrog_8841	496.6	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039323_28	UniRef90_A0A3A6GQS5	1213.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039323_28	411460.RUMTOR_02070	538.0	0	N/A	N/A
Pfam	UHGV-0039323_28	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0039323_28	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0039323_28	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039323_28	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0039323_29	K02316	77.4	2.2e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0039323_29	phrog_11992	132.6	2.9e-39	N/A	unknown function
UniRef90	UHGV-0039323_29	UniRef90_A0A3A6GSV7	309.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0039323_29	411460.RUMTOR_02069	126.0	7.39e-35	CHC2 zinc finger	N/A
PADLOC	UHGV-0039323_29	drt-UG29	45.6	0.0000000000006	DRT	DRT
Pfam	UHGV-0039323_29	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0039323_29	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0039323_29	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0039323_30	phrog_3490	155.5	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039323_30	UniRef90_R9KEE1	261.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039323_30	1256908.HMPREF0373_00660	262.0	0	N/A	N/A
Pfam	UHGV-0039323_30	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0039323_30	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0039323_31	phrog_18107	257.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0039323_31	1256908.HMPREF0373_00659	234.0	0	N/A	N/A
structural_annotation	UHGV-0039323_31	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0039323_33	phrog_2872	190.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039323_33	UniRef90_UPI0015715A02	318.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0039323_33	1256908.HMPREF0373_00658	290.0	0	AAA domain	N/A
structural_annotation	UHGV-0039323_33	PF08423,TIGR01618	N/A	N/A	N/A	N/A
PHROG	UHGV-0039323_34	phrog_59	127.0	7.7e-38	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039323_34	UniRef90_A0A6S6XZY4	139.0	2.91e-38	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0039323_34	1206110.L0P6F5_9CAUD	126.0	6.54e-34	sequence-specific DNA binding transcription factor activity	N/A
PADLOC	UHGV-0039323_34	HEase_00016	111.8	9.3e-33	homing endonuclease	RM
Pfam	UHGV-0039323_34	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0039323_34	PF07453	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039323_35	UniRef90_R6RDX0	81.3	6.4e-19	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-0039323_36	NF011879	N/A	N/A	N/A	N/A
PHROG	UHGV-0039323_42	phrog_7964	134.1	0	N/A	unknown function
UniRef90	UHGV-0039323_42	UniRef90_A0A285PUH1	127.0	2e-33	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-0039323_42	411470.RUMGNA_02189	103.0	2.89e-25	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0039323_42	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0039323_42	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0039323_44	COG1321	N/A	N/A	N/A	N/A
Pfam	UHGV-0039323_45	PF10544	N/A	N/A	T5orf172 domain	T5orf172
structural_annotation	UHGV-0039323_45	PF10544	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039323_46	UniRef90_A0A395X814	140.0	3.54949e-42	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039323_46	1121289.JHVL01000079_gene1187	60.8	0.0000000000167	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0039323_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0039323_46	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0039323_47	K03627	50.7	0.00000000000004	MBF1; putative transcription factor	N/A
PHROG	UHGV-0039323_47	phrog_8	45.1	0.0000000000021	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0039323_47	397288.C806_00131	70.5	0.00000000000000927	Transcriptional	N/A
Pfam	UHGV-0039323_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039323_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A