UHGV-0039468 (vOTU-036272)

Viral Genome: UHGV-0039468

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0039468
vOTU ID	vOTU-036272
Representative Genome?	Yes
Source	Hadza
Original genome ID	Pilot_MoBio_Fiber_A_5_1019__NODE_3144_length_29360_cov_4.360482
Associated BioSample	SAMN20031434
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.53 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.51
Jumbo phage	No

Genome content
Genome length (bp)	29,360
GC content	50.43%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	92%
Average CDS length (bps)	530.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0039468_1	K07699	111.2	8.1e-33	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
PHROG	UHGV-0039468_1	phrog_24603	71.4	9.2e-21	N/A	unknown function
UniRef90	UHGV-0039468_1	UniRef90_A0A1C6B3L7	252.0	0	Stage 0 sporulation protein G	N/A
eggNOG-mapper	UHGV-0039468_1	742723.HMPREF9477_01341	81.3	1.57e-17	Sporulation initiation factor Spo0A C terminal	N/A
Pfam	UHGV-0039468_1	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-0039468_1	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
structural_annotation	UHGV-0039468_1	PF08769,TIGR02875	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039468_2	218140.BPSY_1280	67.4	0.0000000000000893	N/A	N/A
structural_annotation	UHGV-0039468_2	TIGR04165,COG3478	N/A	N/A	N/A	N/A
KOfam	UHGV-0039468_3	K22300	51.3	0.000000000000023	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0039468_3	UniRef90_A0A8J6M769	177.0	0	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039468_3	1203606.HMPREF1526_01933	88.6	4.01e-22	helix-turn-helix	N/A
Pfam	UHGV-0039468_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039468_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0039468_3	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_4	phrog_1281	111.0	7.4e-33	N/A	unknown function
UniRef90	UHGV-0039468_4	UniRef90_A0A1V0QCF7	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039468_4	548477.HMPREF0294_0391	152.0	5.60519e-45	Phage-associated protein	N/A
Pfam	UHGV-0039468_4	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0039468_4	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039468_4	PF13274,COG3600	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039468_6	UniRef90_A0A6L9HJX3	111.0	8.13e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039468_6	97139.C824_02817	86.7	1.46e-21	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0039468_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0039468_6	PF13560,NF000090,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0039468_8	K01447	68.4	1.4e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0039468_8	phrog_15001	175.1	0	endolysin	lysis
UniRef90	UHGV-0039468_8	UniRef90_A0A1C6D3S9	473.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0039468_8	1378168.N510_01539	347.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0039468_8	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0039468_8	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0039468_8	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_11	phrog_1129	68.9	5.1e-20	holin	lysis
UniRef90	UHGV-0039468_11	UniRef90_A0A416QZD1	126.0	3.54e-36	Enolase	N/A
eggNOG-mapper	UHGV-0039468_11	1007096.BAGW01000036_gene2663	125.0	2.09e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0039468_11	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0039468_11	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_12	phrog_937	54.6	0.0000000000000018	hemolysin	other
eggNOG-mapper	UHGV-0039468_12	428125.CLOLEP_00170	61.2	0.000000000164	N/A	N/A
PHROG	UHGV-0039468_15	phrog_5302	119.4	4.4e-39	tail protein	tail
UniRef90	UHGV-0039468_15	UniRef90_UPI001EDFA717	256.0	0	bacterial Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0039468_15	1203606.HMPREF1526_00261	358.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0039468_15	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0039468_15	COG1262	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_17	phrog_13589	73.0	1.90577e-43	N/A	unknown function
eggNOG-mapper	UHGV-0039468_17	411471.SUBVAR_06929	329.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0039468_17	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-0039468_18	1297617.JPJD01000099_gene2171	108.0	1.13e-24	Collagen triple helix repeat protein	N/A
COG	UHGV-0039468_18	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0039468_18	PF10651,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_20	phrog_32744	660.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0039468_20	1120998.AUFC01000030_gene2247	243.0	0	N/A	N/A
structural_annotation	UHGV-0039468_20	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039468_21	1120998.AUFC01000030_gene2246	105.0	3.1e-26	N/A	N/A
structural_annotation	UHGV-0039468_21	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_22	phrog_23464	273.8	0	N/A	unknown function
UniRef90	UHGV-0039468_22	UniRef90_A0A1C6B4Q1	778.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0039468_22	665950.HMPREF1025_02660	338.0	0	phage tail tape measure protein	N/A
COG	UHGV-0039468_22	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0039468_22	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_23	phrog_706	133.4	1.3e-39	N/A	unknown function
UniRef90	UHGV-0039468_23	UniRef90_A0A1C6B556	419.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0039468_23	1540257.JQMW01000013_gene734	101.0	6.19e-24	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0039468_23	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0039468_23	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039468_24	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_25	phrog_820	83.9	1.6e-24	major tail protein	tail
UniRef90	UHGV-0039468_25	UniRef90_A0A174M1L1	207.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0039468_25	411461.DORFOR_01172	200.0	0	N/A	N/A
structural_annotation	UHGV-0039468_25	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_26	phrog_3266	61.9	9.4e-18	tail completion	connector
eggNOG-mapper	UHGV-0039468_26	663278.Ethha_0098	52.4	0.00000151	N/A	N/A
structural_annotation	UHGV-0039468_26	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_27	phrog_556	40.1	0.00000000004	minor head protein	head and packaging
UniRef90	UHGV-0039468_27	UniRef90_UPI001C3B04D8	88.6	6.17e-20	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0039468_27	411461.DORFOR_01170	73.6	0.00000000000000752	Minor capsid protein	N/A
Pfam	UHGV-0039468_27	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0039468_27	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_28	phrog_3366	61.3	1.8e-17	N/A	unknown function
Pfam	UHGV-0039468_28	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0039468_28	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_29	phrog_541	48.0	0.0000000000002	head-tail adaptor	connector
UniRef90	UHGV-0039468_29	UniRef90_A0A345MKD1	62.4	0.000000000279	Putative head-tail connector protein	N/A
PHROG	UHGV-0039468_30	phrog_544	135.7	2.69999e-40	major head protein	head and packaging
UniRef90	UHGV-0039468_30	UniRef90_A0A1C6B5R0	753.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0039468_30	1232453.BAIF02000011_gene3359	380.0	0	N/A	N/A
Pfam	UHGV-0039468_30	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0039468_30	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039468_31	UniRef90_A0A1C6B5I1	370.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0039468_31	1125725.HMPREF1325_1331	58.5	0.000000048	Phage minor structural protein GP20	N/A
Pfam	UHGV-0039468_31	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0039468_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_34	phrog_581	174.0	0	minor head protein	head and packaging
UniRef90	UHGV-0039468_34	UniRef90_A0A1C6B625	728.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0039468_34	411471.SUBVAR_06995	164.0	1.46996e-42	N/A	N/A
Pfam	UHGV-0039468_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0039468_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039468_34	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_35	phrog_533	163.8	0	portal protein	head and packaging
UniRef90	UHGV-0039468_35	UniRef90_A0A0X8VBF2	190.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0039468_35	1235799.C818_04218	143.0	4.17e-35	N/A	N/A
structural_annotation	UHGV-0039468_35	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0039468_36	K06909	59.2	5.4e-17	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039468_36	phrog_29775	245.2	0	N/A	unknown function
UniRef90	UHGV-0039468_36	UniRef90_A0A1C6B5W6	881.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0039468_36	428125.CLOLEP_01804	562.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0039468_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0039468_36	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0039468_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039468_36	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039468_37	UniRef90_UPI0018AC41F1	183.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039468_37	1226322.HMPREF1545_00042	159.0	0	N/A	N/A
structural_annotation	UHGV-0039468_37	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0039468_38	K07738	46.2	0.00000000000076	nrdR; transcriptional repressor NrdR	N/A
COG	UHGV-0039468_38	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
UniRef90	UHGV-0039468_39	UniRef90_A0A1C6IRM5	130.0	2.99e-38	Transposase	N/A
Pfam	UHGV-0039468_39	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0039468_39	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
PHROG	UHGV-0039468_41	phrog_801	94.8	1.1e-27	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0039468_41	UniRef90_A0A1C6B6A0	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039468_41	1244856.K4PY83_9CAUD	74.7	0.0000000000000104	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-0039468_41	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0039468_41	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_44	phrog_22543	41.7	0.000000000015	N/A	unknown function
PHROG	UHGV-0039468_47	phrog_37865	41.3	0.0000000000021	N/A	unknown function
PHROG	UHGV-0039468_48	phrog_1384	129.5	2.1e-38	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0039468_48	428125.CLOLEP_01816	294.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0039468_48	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0039468_49	phrog_25732	49.4	0.0000000000000046	N/A	unknown function
UniRef90	UHGV-0039468_51	UniRef90_UPI001C3A10B1	56.2	0.0000000447	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0039468_51	1226322.HMPREF1545_00023	50.4	0.00000157	N/A	N/A